Sphaerodactylus townsendi (Townsend's least gecko): 125428289
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Entry
125428289 CDS
T08213
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow04510
Focal adhesion
stow04512
ECM-receptor interaction
stow04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125428289 (COL2A1)
04518 Integrin signaling
125428289 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125428289 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
stow00536
]
125428289 (COL2A1)
Glycosaminoglycan binding proteins [BR:
stow00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125428289 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
125428289
NCBI-ProteinID:
XP_048344065
LinkDB
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Position
LG03:178657274..178797114
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AA seq
1225 aa
AA seq
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MHTHTHTHTHTHTHTHTHTHTHTLKLRRVSPSKSGGGCIHSPCATVSFLFRITEWIFPPA
VYKNGNKKAEHRGSASPPPPPPQAFIVWDIIGKMETLSDEAGSCVQDGQRYSDKDVWKPE
PCRICVCDTGTILCDEILCEELRDCPSPEIPFGECCPICPTDQPAATDRQPGPKGQKGEP
GDIKDVVGPRGPPGPQGPSGEQGPRGERGDKGEKGVPGPRGRDGEPGTPGNPGPSGPPGP
PGPPGLGGNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGSPGE
PGEPGASGPMGPRGPPGPSGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGH
RGYPGLDGSKGEAGAAGAKGEAGSAGESGSPGPMGPRGLPGERGRPGPSGAAGARGNDGL
PGPAGPPGPVGPAGSPGFPGAPGAKGEAGPTGARGPEGAQGSRGESGSPGSPGPSGAPGN
PGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGEPGIAGFKGEQGP
KGEPGPAGPQGGPGPAGEEGKRGTRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGA
PGERGPPGLGGPKGAGGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGP
PGPQGARGQPGVMGFPGPKGANGESGKAGEKGLPGAPGLRGLPGKDGETGAGGPPGPSGP
AGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGLPGLVGPRGERGFPGERGS
PGSQGLQGSRGLPGTPGTDGPKGATGPSGAPGAQGPPGLQGMPGERGAAGIAGPKGDRGD
LGEKGPEGAPGKDGGRGLTGPIGPPGPSGPNGEKGESGPPGLSGAAGARGAPGDRGEPGA
PGPAGFAGPPGADGQPGAKGEQGESGQKGDAGTPGPQGPSGAPGPQGPTGVNGPKGARGA
QGPPGATGFPGAAGRVGPPGPNGNPGAPGPPGSAGKDGPKGARGDGGPPGRAGDPGLQGP
AGPPGEKGESGEDGPPGADGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGS
SGGPGDRGPPGPVGPPGLTGPSGEPGREGNPGSDGPPGRDGSPGVKGDRGETGPLGSPGA
PGPPGSPGPVGPTGKQGDRGESGAQGPLGPPGAAGARGMPGPQGPRGDKGEAGEAGERGL
KGHRGFTGLQGLPGPPGTSLETQSH
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgcacacacacacacacacacacacacacacacacacacacacacacacacacacacac
acacacacacttaaactaaggagagtttccccctccaaatcaggaggtggatgcattcat
tccccctgtgctacagtgtcatttctttttcgtataaccgaatggatttttccaccagca
gtttacaaaaatgggaacaaaaaggctgagcatagaggcagcgcttcccccccccccccc
cccccccaagcttttattgtctgggatattattgggaagatggaaactttatcagacgag
gcaggcagctgtgtacaggatgggcagaggtatagtgataaagatgtgtggaaacctgaa
ccctgccggatctgtgtttgtgacactggcactatcctctgcgacgagatactctgcgaa
gaactgagagactgtcccagccccgagatacccttcggagaatgttgtcccatctgccca
actgaccagcctgctgccactgatcggcaacctggccccaagggacaaaaaggggaaccc
ggcgatattaaagatgttgtaggaccaagaggtccccctggaccacagggaccttcaggt
gaacaaggaccacggggggaacgtggagataaaggggaaaagggcgttcctggcccacgt
ggcagagatggcgaacctggtacacctggcaaccccggcccatctggacccccaggtcct
ccgggtccccctggtcttggtggaaactttgctgctcaaatggcaggaggatttgacgag
aaagctggtggtgctcagatgggagtcatgcaaggacctatgggacctatgggaccacga
ggccctccgggacccacaggatctcctggccctcaaggatttcaaggcagccctggtgaa
cctggagaacctggtgctagtggtccaatgggtccccgtgggccacctgggccatctgga
aaacctggtgatgatggtgaagcaggcaaacctggcaaatcaggagagcgtgggccacct
gggcctcagggagctcgaggtttccctgggactccaggtctccctggcgtgaaaggacac
agaggttaccctggattggatggttccaagggtgaagctggtgctgcaggtgcgaagggt
gaagctggttctgcaggtgaaagcggttctcctggtcccatgggtcctcgtggtcttcct
ggagagagaggacgtcccggcccatctggtgctgctggtgctcgtggaaatgatggtctc
cctggcccagctggcccacctggacccgttggccctgctggatctccaggtttccctggt
gcaccaggtgcaaagggtgaagctggccccactggtgctcgcggccccgagggcgctcaa
ggatcccgaggtgaatctggaagccccggctcacctggaccttcaggagctccaggcaac
cctggaacagacgggatccctggtgccaaaggatctgcgggtgctccagggattgctggc
gctcctggttttcctggcccacgtggacctcctggacctcaaggagcaactgggcctttg
ggtcctaaaggccagtcgggggaacccggtattgcaggcttcaaaggtgaacagggcccc
aaaggtgaacccggccctgcaggcccacaaggcggtcccggaccagctggtgaagaagga
aagagaggaactcgtggtgagccaggagcagcaggaccacttgggccacctggggaaagg
ggagcccctggaaatcgtggtttcccaggtcaagatggattagctggtcccaagggtgct
cctggggaacgtggtcctcctggccttgggggtcccaaaggagctggtggagatcctgga
cgtccgggagagcctggcctgcctggtgctaggggtctcactggtcgtcctggtgatgct
gggcctcagggcaaagttggcccatctggtgccccaggagaagatggacgaccgggccct
cctggtccacaaggtgcccgtggtcagccaggcgtgatgggtttcccaggccctaaaggt
gctaacggtgaatcgggtaaagccggtgagaagggacttcctggcgctcctggtctacga
ggtcttcctggtaaagatggtgaaacaggagcaggtgggccacctggaccttcagggcca
gctggcgagagaggggaacaaggtgctccaggaccttctggattccagggacttccagga
cccccaggccctccaggtgaaggtggaaaaccaggtgaccagggtgttcctggagagggt
ggacttccaggtctggttggccccagaggtgaacgtggctttcccggtgaacgtggctct
ccaggctctcaaggtttgcagggttctcgtggacttcctggcactcctggtactgatgga
cctaagggtgctactggtccttctggcgcccccggagctcaaggacccccaggtctacag
ggaatgcctggtgagagaggagcagcaggtattgctggacccaagggagacagaggtgac
cttggtgagaagggtccagaaggcgcacctggcaaggatggtggcagaggtttgactggt
cccattggtcctcctggcccttctggtcccaatggtgagaagggtgaatctggccctcct
ggcctgtccggtgctgcaggtgctcgcggtgcccctggcgaccgtggcgaaccaggtgct
cccggccctgctgggtttgctggtcctcctggtgctgatggccagcctggtgctaaaggc
gaacaaggcgaatcagggcagaagggagatgctgggaccccaggcccacaaggaccttct
ggcgctcctggcccacagggtccaactggtgtaaatggtccaaaaggagcacgtggagca
cagggacctccaggtgccactggattccctggtgcagcaggacgagttggacccccgggc
cccaacggcaatcctggcgccccaggccctccaggttctgctggtaaagatggtcccaag
ggtgctcgtggcgatggaggcccacctgggcgtgctggtgatcctggtctccaaggccct
gctggtcccccaggcgagaagggagaatccggagaagatggcccccctggtgctgatggt
ccctctggtcctcaaggtttggcagggcagagaggtattgttggtctccctggtcagcgt
ggcgagagaggattccctggtctacctggtccttctggtgagcctggcaaacaaggttct
tctggagggcctggtgaccgaggcccacctggcccggttggcccacctggtctgactggt
ccctctggtgaacctggacgagagggtaaccctggttcagatggacctcctggcagagat
ggatctcctggtgtgaagggagatcgcggtgagacgggtcctcttggttctcctggtgct
cccgggccacctggctctccaggtcctgttggtccaaccggcaaacaaggagacagaggt
gaatctggtgctcaaggcccattgggtcctccaggtgcagcaggggcacgtggcatgccg
ggtccacaaggtcctcgtggggacaagggtgaagctggcgaggcaggagaacgaggtttg
aagggccatagaggattcaccggcctgcagggtctccctgggcctcctggtacttccttg
gagactcaaagccattag
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