Sphaerodactylus townsendi (Townsend's least gecko): 125428357
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Entry
125428357 CDS
T08213
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stow03021
]
125428357 (SCAF8)
03041 Spliceosome [BR:
stow03041
]
125428357 (SCAF8)
Transcription machinery [BR:
stow03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125428357 (SCAF8)
Spliceosome [BR:
stow03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
125428357 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
DUF3525
Motif
Other DBs
NCBI-GeneID:
125428357
NCBI-ProteinID:
XP_048344307
LinkDB
All DBs
Position
LG01:complement(97611686..97706996)
Genome browser
AA seq
1326 aa
AA seq
DB search
MEAVKAFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLPGTTATMSNNTPGTPVTPATPANVVQSLPDPWV
SQITNTDTLAAVAQILQSPQGQQLQQLIQTLQMQQQKPQPSLLQALDAGLVVQLQALTAQ
LTAAAAAANTLNPLEQSVSFNKKLIDRFGDFGEEADINEEPKKETSTSQLPLGSESVNNS
LFHQLAEQLQQQNLEHLRQQLLEQQPAKESPDETQEGNFGSEHSASPSQDSNHQQFIEVE
TNLDNSMDVQQQDMDIDEGQEVVEQEVFEQEEKKSAVLSRSRTRSRSRSRSPRKRRSRSR
SGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTL
WVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKI
GSKIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWEKVKLDDLDGFAEGGMIDQETVNNEW
ETARITETVKEPVQTTPSTTAETTTVTTTQTETYTQSVAMLQIPVAPAVPTVSLVPPAFP
VTMPVPPPGYSTIPPPPFLRASFNPSQPPPGYMPPPVPPPVVPPVVPTSLVQPSLPIAQE
TMKEVPFSSLVLPVGTISSSITTSTLSAGSVFSPLSSNKELDEKSSHLADLQISSSEKRA
ALDDVSSGSGLIGGLQPPSVSTSSGLVAGVQPPSVSSSSGLVQPSVSSSSGLLTRVQPPS
ASSSSGLLTGIQPPSVSSSSGLLTGLQPMNVSSSSSLLMGLQPPIMSSNSGLLTGIQPPI
VSSSSGLLTALQPPIVSSNTGILGLPPPMVSSSSGLLGVPPPNISSGSGLLGLQPPTGIQ
SMPHLSITSQRLPGMPLVDIRAGLMPQPHGPRFPLIQPGMPPQRSIPPPAILDPSLPPPP
RAFLPGDLFNQTERPFGTSGRQSVDSISNPDKRLPLGDDSIQQEGDRDYRFPPVENRENF
TRPSSVDIRDSMGRPPLDPRESLGRPPVDGRDRLARPHIDLRENFGRPGVDPLGRREHFA
YNSDKHWGQRGDYDEREHHSFPAYGGLKGFQEDRERYRQMNYRFETRSGPSWNRGLEQDA
HRDFDDRRRPWERQRDRDDRDFNFGREINGNRFGRERLQNNWLPPPHPRAFEYFERGSSQ
PKADNVPQVNGENAETESQPPDVQAQDESELYENLATSSDIKKEKSDTEAELESEPVVES
TETEGT
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaaagcttttaatagcgagttgtactcgctgaatgactacaaacctccc
atttcaaaagctaaaatgacacagattaccaaggcagcaatcaaggctataaagttctac
aagcatgttgtacagagcgttgagaaattcattcagaagtgtaaaccggaatacaaggtg
cctggcttgtatgtaattgactcgattgttcgacagtctcgtcatcagtttgggcaagaa
aaggatgtatttgctcctaggtttagcaataacatcattagcaccttccagaatttgtat
cgttgccctggagatgacaagagtaaaattgttagagtactaaatttatggcagaagaat
aatgtgttcaagagtgaaattattcagcctctattggatatggcagcaggaattcctcct
ccagtcgtcacccctgtcttgcctggcacaacagctactatgagtaacaatacaccaggc
actcctgtgacacctgctacgccagccaacgttgtccaaagcttacctgatccttgggtc
tctcagataactaatacagatacccttgctgctgtagcacagattctccagagtccacaa
ggtcaacagcttcagcagttaatacagacactgcaaatgcaacagcaaaaaccacagcca
tctctgctacaggcactggacgctggtcttgttgttcagttacaagccctcacagcacaa
cttacagctgctgccgccgccgccaatacgcttaatcctctagaacaaagtgtttctttt
aacaagaagctgatagacagatttggggatttcggggaagaagctgacattaatgaagag
cctaaaaaagaaacttcaacttctcagctgcctcttggatcagaatctgtgaacaactca
ctttttcatcagctagctgaacaattgcagcaacaaaacctagaacatctccgccagcag
cttctagagcagcagcctgcaaaggaaagccctgatgaaactcaagaagggaattttggt
tctgagcattctgcatcaccttcacaagatagtaaccatcagcagtttatagaagttgaa
acgaaccttgacaactcaatggatgttcagcaacaggatatggatatagatgaaggacaa
gaagttgttgaacaggaagtcttcgaacaagaagaaaagaaatcagcagtactttcaaga
tcaagaacacgttcaagatctcgttcaaggtccccaagaaaaagaaggtccagatcacga
tccggttctcgaaaacgtaaacatagaaaacgttcccgctctagatcaagagaaagaaaa
aggaaatcttcacggtcatactctagtgaaagaagagctagagaaagggagaaagaacga
cagaaaaaagggttacctcccatacggtccaaaacgttaagtgtctgcagtactacgctt
tgggttggccaagtggacaaaaaagccacacagcaagatttaacaaatttatttgaggaa
tttggacaaatagaatctataaatatgattccccccaggggttgtgcatatgtctgcatg
gttcatagacaagatgcatatcgtgctcttcagaaattaagctctgggtcttacaagatt
ggatcaaaaattattaagattgcatgggctttaaataaaggggtaaaaactgaatacaaa
caattctgggatgtagatcttggagtttcatacataccttgggaaaaagttaagctggat
gatttagatggctttgcagaaggaggaatgattgaccaggaaacagtaaataatgaatgg
gaaactgcaagaatcacagagactgtaaaagagcctgtgcaaaccaccccaagtacaaca
gctgaaacaaccacagttaccacaacacaaacagaaacatacacacagtctgttgccatg
ttacagattcctgtggctccagctgtgcccactgttagtttagttcctccagcatttcct
gttacaatgcctgtcccacctcctggttatagtacaattcctcctcctcccttcttgaga
gcaagtttcaatccttcacaaccacctcctgggtatatgccacctcctgttccacctcca
gttgttccaccagtagtcccaacatctcttgtacagccttcactaccaattgctcaagaa
acaatgaaagaggttccttttagcagccttgttctgccagttggcacgatttctagcagc
attaccacctcaacattatctgctggaagtgttttttctcctctttcaagtaacaaggaa
ttggatgaaaaaagttcacaccttgcagaccttcagatttcatccagtgaaaagagagct
gctctagatgatgtttcaagcggttctggacttattgggggactccaaccacccagtgtc
tcaaccagttctgggcttgtggctggagtgcagccacccagtgtctcaagtagctcaggg
cttgtgcagcctagtgtctccagcagctctggacttctgacaagagttcagccccctagt
gcttcaagcagctctgggcttcttacgggtattcagccacctagtgtctcaagcagctcc
gggcttcttacaggactccagcctatgaatgtctcaagcagctctagccttctcatggga
ctccagccacccataatgtcaagtaattctggacttttgacaggaatccaaccacccata
gtgtcaagtagttctgggcttctgacagctctccagccacccatagtgtcaagtaacact
gggattctgggattgccaccaccaatggtttcaagtagttccggactgttaggtgtacca
ccaccaaatatttcaagtggttctggacttctgggtctacagccacccactgggattcaa
agcatgccccatttaagtatcacaagtcaaaggttgcctggaatgcctctggtagatatc
cgggcaggactaatgccacagccgcatgggccaagatttccactaatacaacctggaatg
ccaccacaacgtagcattcctcctccagcaatccttgacccatcacttcctcctccgcct
agagctttccttccaggggatctttttaatcaaacagagaggccttttggaacttctggt
aggcaaagtgttgatagcatttctaatccagataaaaggttgccacttggagatgacagc
attcagcaagaaggagacagagattatcgctttccacctgtagaaaacagagagaacttt
actcgaccatcttcagtggatattagggattccatgggacggcccccactagatccgaga
gagagtctaggaaggcctccagtagatggacgagatcgtcttgccaggccccatatagat
ttgagagagaactttggaaggccaggtgtggatccccttggccggagagagcattttgct
tacaattcagataagcactggggacaaagaggagattatgatgaaagagagcatcattct
tttcctgcatatggcggtcttaaaggcttccaggaagatcgagagagatatcgacaaatg
aactacagatttgaaacgcgaagtgggcctagctggaacaggggtctggaacaggatgct
cacagagactttgatgaccgccgtagaccctgggaaaggcaaagggacagggatgacaga
gattttaattttggcagagaaatcaatggaaacagatttgggagagaaagattacagaat
aactggctaccccctccacacccgagagcgtttgagtattttgaaaggggcagttctcaa
ccaaaagctgataatgtgccccaagttaatggtgaaaatgcagagacagaaagccaacca
cctgatgtgcaagcacaggatgaatcggaactttatgaaaatctggcaacttcaagtgac
ataaaaaaagagaagagtgacacagaagctgaattagaaagtgaaccagtggtagaaagc
acagaaactgaggggacataa
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integrated database retrieval system
