Sphaerodactylus townsendi (Townsend's least gecko): 125428528
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Entry
125428528 CDS
T08213
Symbol
SKIV2L
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125428528 (SKIV2L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stow03019
]
125428528 (SKIV2L)
Enzymes [BR:
stow01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125428528 (SKIV2L)
Messenger RNA biogenesis [BR:
stow03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125428528 (SKIV2L)
mRNA degradation factors
3'-5' decay
Ski complex
125428528 (SKIV2L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
DUF3516
YlbD_coat
PhoH
nSTAND3
Motif
Other DBs
NCBI-GeneID:
125428528
NCBI-ProteinID:
XP_048344709
LinkDB
All DBs
Position
LG03:14391404..14434166
Genome browser
AA seq
1274 aa
AA seq
DB search
MELERIALPPRGPLELPLSILEVGCTGRFELITQEEKPDGDGFPLTTLPHGLPPYAEELA
SELEQRFLSSPDWLPIHHFERSHRFWPREKDVESLFEVGVTPVHSALQADRNPTTGELLG
FREALVDNMGLSAKNSLSFQRAPGPPTEALRGSATNYPFWPGGIDEPSLEQMKTQGDLEE
DIDFQKDLLTVPPGWKKGVKFTKQELKASPGLLNLTHLLGALDTFELGSSSDEEGKEKAE
EAEKRKKRGKGRRGAQGEEKPPVEPAPLQRASSLEELVLKEVTSGPKPAPPAAPALAAEP
PKEQWAIPVDVSSPVDDFYKRIPDPAFKWPFETDVFQKQAILHLEKHDCVFVAAHTSAGK
TVVAEYAIALSQKHMTRTIYTSPIKALSNQKFREFKKTFGDVGLLTGDVQLHPEASCLIM
TTEILRSMLYNGSDVLRDLEWVIFDEVHYINDSERGVVWEEVLIMLPDHVNIILLSATVP
NTLEFADWIGRIKRKKIYVISTLKRPVPLEHHLYTGNSQKTQNELFLLVDAHGSFLTKGY
YDAVEAKKERASKHSQTFGAKQPMHLGGGPGQDKNIWLSLINMLRKKDQLPVVAFTFSRN
RCDDNASMLTTIDLTTNTEKSEIHVFFQKWISCLKGTDRQLPQVVHMVDLLKRGIGVHHS
GILPILKEVVEMLFSKGLVKILFATETFAMGVNMPARTVVFDSIRKHDGANFRDLVPAEY
IQMAGRAGRRGLDTTGMVIILCKNQVPEMADLHRMMLGKPTQLQSQFRLTYTMILNLLRV
EALRVEDMMKRSFSEFHARKDSKVYEHRVAQLSTMLAKMDVADMSGQLSDLQEYYCVVRE
LQETREFVQRRIMESVNGLKALSVGRVIVVNNQEHKNALGVILQVSSDSTNRAFNSLVIC
EKNPTEGDSAANPEGGMSSTADVPLPDDLLRTRLFLPEGSCGHVIKKLGPADISGVTTKT
LRVNAERILEDFKKRQMPRFRNDPPGPSAATATQELLRLAEGSPEGLPLLDPVNSLQLKD
IEVVEGVMKARHLEERLLGFQCVHSPRFPTEYIRFQERQRVQEELEQLRFRLSDQSLMLL
PEYHQRIEVLRSLGYINEGGTVELKGSVARQISNHELLLTQLLLDNTLTDLRPEEIVALL
SCTVCQVRTQVEPQLPSVLQKGIEHIRSVAEEIALLQRKCGLQESVEDFVEQYKFGLVEV
VYEWARGMPFAEIARLTDVQEGIVVRCIQRLDETCREMRNAARVTGEPTLHAKLESASNM
IKRDIVFAASLYTQ
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atggagttggagaggatagccctgccccccagggggcctctggagctacctctctccatt
ctggaggtcggatgtacgggccggtttgagctcatcacccaggaggagaagccagacgga
gatggattcccgctgaccacgctgccccacggattgcccccttacgcggaggagctggcg
tctgaattggagcagcgttttctcagcagccctgattggcttcccatccaccactttgag
aggtctcacaggttctggccccgtgagaaagacgttgaatcgcttttcgaggtgggcgta
acacctgtacattcagcacttcaggctgaccgtaaccctactacaggagagctgctgggt
ttcagagaggctctggtggataatatgggcttatcagccaaaaattcgctttccttccag
cgggcgcccggaccaccaactgaagctctgagaggcagcgccaccaattaccccttctgg
ccaggtgggatagatgagcccagcctagagcaaatgaagactcaaggagacctggaagag
gacatagatttccagaaagatttgctgactgtcccacctggctggaagaagggagtgaag
ttcaccaaacaagagctcaaggcctccccaggtttgctgaacctcacccacctgttgggg
gcgctggacacttttgagctggggtcttccagtgacgaggaaggcaaggagaaagcagag
gaagcggagaagagaaagaagagggggaaaggaaggagaggggcacagggggaagaaaag
cctcctgtggaaccggcccctctgcagagggcaagcagcctggaagaactggtgctaaag
gaggtgacctctggccccaaaccagccccaccggctgctccggctcttgccgccgagccc
cccaaggagcagtgggccatccccgtggatgtcagctcccccgtcgatgacttctacaag
cggattccagatccagctttcaagtggccgtttgagacggacgttttccagaaacaggca
attcttcacttggagaagcacgactgcgtgttcgtggctgcccacacctcggcaggaaag
actgtggtggccgagtacgccattgccctctcacagaagcacatgacccgcaccatctac
acttccccgatcaaagctctttccaaccagaagttccgagagttcaagaaaacctttggg
gatgttgggctgttgacgggggacgttcagctgcatccggaagcctcctgcctcatcatg
accacggaaatcctccggtctatgctttataatggatcagatgttctcagagacttggag
tgggtgatctttgacgaggttcattacattaacgactctgagcgtggcgtggtctgggaa
gaagtcctcatcatgctaccagaccacgtgaacataattttgctgagtgccacggtcccc
aatacactagagttcgccgactggatcgggaggatcaagaggaagaaaatctatgtgatc
agcacactgaagcgccccgtcccgctggaacatcacctgtacaccggcaatagccagaaa
acccagaatgagctcttcctgctggtagacgcccatgggagtttcctcaccaaggggtac
tacgatgccgtggaagcaaagaaggaacgggccagcaaacactcccaaacctttggggcc
aaacagcctatgcacctaggaggcgggccagggcaggacaagaacatctggctctccctc
atcaacatgctgcgcaagaaggaccagctgcccgtggtcgccttcactttctcccgcaat
cgctgcgacgacaacgcttccatgctcaccaccatcgacctgaccacgaatacggagaag
agcgagatccacgtcttcttccagaaatggatttcctgcctgaagggcacggatcgtcag
ttgcctcaggtggttcacatggttgacctcttgaagcgtggcattggggtgcatcacagc
ggcatcctgcccatcctcaaggaagtggtggagatgctcttcagcaaaggactggtcaag
atcctctttgccacagagacgttcgccatgggggtgaatatgccagcaaggactgtggtc
tttgactcaatccgcaaacacgatggggcaaacttccgtgacctggtgccagctgagtac
atccagatggccggcagagctgggcgccgaggtctcgataccacggggatggtgatcatc
ctatgcaaaaaccaagtgcccgagatggctgaccttcaccgcatgatgttgggcaaaccg
acgcagctgcagtcccagttccgcctgacctacaccatgatccttaacctgctgagggtg
gaagcccttcgagtggaggacatgatgaaaaggagcttctccgagttccatgcccggaag
gacagcaaggtctatgaacatcgggttgcccaacttagcaccatgttggccaagatggac
gtggcagatatgtcggggcagctcagtgatctacaggagtattattgcgttgtcagagag
ctgcaagagaccagagaattcgtacaaaggcgaataatggagtcggtgaacggactgaag
gccctttctgtcggacgggtgattgtggtgaataaccaagaacacaagaatgccctggga
gtgatcctgcaggtttcttctgactcaaccaaccgggccttcaactctttggtgatatgc
gagaagaaccccaccgaaggagactcggctgccaatccagagggaggaatgtcctctact
gcagatgtaccactgccggatgaccttctccgcaccaggctcttcctcccagagggctcc
tgtggacatgtcatcaagaaactgggcccagccgacatttcgggtgtcacaaccaagacc
ttgagagtcaacgctgagcgcatcctggaggatttcaagaagcgacagatgcccaggttc
aggaacgacccccctggaccatcggcggccacggcgacccaggagctgctgcgcttggcc
gagggctcccctgaagggcttcctctgttggatccggtgaacagccttcagctgaaggac
atagaggtggttgagggcgtgatgaaggcccgtcacctggaggagaggttgctcgggttc
cagtgtgtgcacagcccccgcttccctaccgagtatatccggttccaagagcgccagcgg
gtgcaggaggagctcgagcagctgcggttccggctgtccgaccagtccttgatgctgctc
cccgaatatcaccagcgtatcgaggtcctgcgttccttgggctacatcaacgaaggaggg
acggtggagctgaaggggagcgtggcccgccaaatcagcaaccacgagctgctcctgacg
cagctgctgttggacaacaccctgacggacctgcggccggaggagattgtggccttgctc
agctgcaccgtctgccaggtgcgcacccaggtggaaccgcagctgccttcggtcctccag
aagggtattgagcacatccggtcagtggcggaagagattgccctgttgcagcgcaagtgt
ggtctacaggagtcggtggaggactttgtggagcagtacaagttcgggctggtggaggtg
gtctacgaatgggcccgcggcatgccattcgccgagatcgcccgcctgacagacgtgcag
gaggggatcgtcgtccgttgcatccagcgcttggacgagacctgccgagagatgcgcaac
gcggcccgggtcacaggggagccgactctgcacgccaagctggagtccgcctccaacatg
atcaagagggacattgtcttcgcagccagcctctacacccagtga
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integrated database retrieval system
