Sphaerodactylus townsendi (Townsend's least gecko): 125428776
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Entry
125428776 CDS
T08213
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03013
Nucleocytoplasmic transport
stow03015
mRNA surveillance pathway
stow03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125428776 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
125428776 (DDX39B)
03015 mRNA surveillance pathway
125428776 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stow03019
]
125428776 (DDX39B)
03041 Spliceosome [BR:
stow03041
]
125428776 (DDX39B)
Enzymes [BR:
stow01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125428776 (DDX39B)
Messenger RNA biogenesis [BR:
stow03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125428776 (DDX39B)
Spliceosome [BR:
stow03041
]
Complex C
Other components
EJC/TREX
125428776 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125428776 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125428776
NCBI-ProteinID:
XP_048345368
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All DBs
Position
LG03:14515853..14528421
Genome browser
AA seq
428 aa
AA seq
DB search
MTENDVDNELLDYEDDEVENQAAGDGVDVPSKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNESLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRRTPHEKQVMMFSATLSKDIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgactgagaacgacgttgacaacgagctcttggattacgaggacgatgaggttgaaaac
caggcagcaggagacggggtggacgtcccgtccaagaaggatgtcaagggctcctacgtc
tccatccacagttctgggtttcgcgatttcttgctaaagccagagctgctgcgtgccatc
gtcgactgcggctttgagcacccctcagaagtgcaacatgagtgtatcccgcaagccatc
ttgggtatggacgttttgtgccaggccaagtcaggcatgggcaagaccgccgtcttcgtt
cttgctacactacagcagttggaaccggtcaccggacaggtgtcggtgctggtgatgtgt
cacactcgtgagctggcctttcagatcagcaaggagtacgagcgtttctcgaagtacatg
cccagtgtcaaggtgtcagtgttctttggaggcctgtccatcaagaaggacgaggaggtg
ctgaagaaaaactgcccccacattgtggtggggaccccgggccgcatcctggccttggcc
cgcaacgagagtctcaacctcaagcacatcaagcatttcatcctggacgaatgcgataag
atgctcgagcagctcgatatgcgccgggatgtccaggagatcttccgcaggaccccgcat
gaaaagcaggtcatgatgttcagtgccactctcagcaaggacatccgccccgtgtgccgc
aaattcatgcaagaccccatggagatcttcgtggacgacgagaccaagctgacgctgcac
gggctgcagcagtactatgtcaaactgaaagacaacgagaagaaccgcaagctctttgat
ctgctcgatgtgctggagttcaaccaggtggtgatctttgtgaagtcggtgcagcgctgc
atagcgttggctcagcttctggtggagcagaacttcccggccattgccatccacaggggg
atgccccaggaggagaggctgtcacggtaccaacaattcaaggatttccagcgccgaatt
ttggtggccaccaatctctttggccgtggcatggacatcgagcgagtcaacattgcgttc
aactatgacatgccggaggattcagacacctacctgcaccgggtggctcgtgctgggcgc
tttggcaccaagggcctggccatcacgtttgtgtcggatgagaatgatgccaagatcctg
aatgaagtgcaggaccgcttcgaggtgaacatcagcgagctgccggacgagattgacatc
tcttcttacattgaacagacccgataa
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