Sphaerodactylus townsendi (Townsend's least gecko): 125429277
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Entry
125429277 CDS
T08213
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125429277 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
stow03041
]
125429277 (PRPF40B)
Spliceosome [BR:
stow03041
]
Complex A
U1 snRNP components
U1 related factors
125429277 (PRPF40B)
Complex B
125429277 (PRPF40B)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
SelB-wing_2
DTW
DUF6887
Motif
Other DBs
NCBI-GeneID:
125429277
NCBI-ProteinID:
XP_048346194
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Position
LG03:complement(141779836..141819307)
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AA seq
834 aa
AA seq
DB search
MSAPDSGSGPPGQPAPFPPAPPPPPILPPPFMPPPGIPPPFPPMGLPPMGPRPPPMPPMP
PGMMPPPPMIPPMPGPPPMGQIPTMVPPMLPGMMMPGVPAGPVSVSGGAAPVTDPSSATV
TQAAPVKPAWSEHRAPDGRVYYYNSETKQSSWEKPDELKSKAELLLSRCPWREYHSETGK
PYYYNAQSKESRWTRPRELDDIEALIKEEEEDLERQQLPETSLSAPASPSPSSAATSDTE
GTGGIEGQETPTTEGAPPAAEEETISSSGPGRRDEEDRVTGNAWSSKEEAKQAFKELLKD
KGVPASASWEQAMKLVSSDPRFSALPKLSEKKQTFNAYKAQRDKEEKEEARLRAKEAKEE
LQRFLEQHNKMSSITRYRKAEQMFGELEVWAMVPERDRKEIYDDVLFFLAKKEKEHAKQL
RKRNIQALKSILDSMSRVSFQTTWSEAQQYLMDNPSFAEDEDLQNMDKEDALICFEEHIR
TLEREEEEERECGRLRERRQQRKNREAFQAFLDELHENGRLHSMSTWMELYPSLSTDRRF
ANMLGQPGSTPLDLFKFYVEDLKARFHDEKKIIKDILKDRNFCVEINTTFEDFAHVISFD
KRAATLDAGNIKLTFNSLLEKAEAREREREKEETRKLRRKEAAFKSMLRQAAPPLEPNTT
WDEVRERFVNNIAFEQITLESERIRLFREFLQVLETECQHFHAKAKKHAKKPKKHHHKRS
ASGSESGSDHPHRGAKRKKRNHSESAGSGASSSPDSEHSTRRSKRQKKKSRKKRAPIAQK
VKLSARKSPAALTSGSGRRSLHGLREEATPLPGVPEGSGVAGIPQRARSSVKGS
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctccagactcaggcagtggtcctcctgggcagccggcccctttccccccggcc
ccaccaccacctccaattcttcctcctccttttatgcctcctcctgggattccgccacca
ttccccccaatggggttgccccccatgggtccacgcccaccacccatgcctcccatgccc
ccgggcatgatgccacctccgccaatgattccacccatgcctggacctccacccatggga
cagattcccacaatggtgccacccatgcttcctgggatgatgatgcctggggtgccagct
gggcctgtttctgtctctggtggggcagctcctgtgacagacccatccagtgccactgtg
acccaggcagcccctgtgaagcctgcctggagtgagcatagggcccccgatgggcgtgtt
tactactacaattctgaaaccaaacaatcaagctgggaaaagccagatgaactcaagtcc
aaggcagagctcttactttcacgctgtccctggcgtgagtaccactcagagacggggaag
ccctactactacaatgctcagagcaaggaatcgcgctggacccggccccgtgagcttgat
gatatcgaagcactgatcaaggaagaggaagaggatttggagaggcagcagctgcctgag
acctctttgtccgcccctgccagtccgagcccatcgtctgctgccacgtcagacacagaa
gggactggaggcattgaaggacaggagaccccaaccactgagggggctcctcctgcagct
gaggaggaaaccataagcagttctggccctggacggagagacgaggaagatcgagtcacc
ggtaatgcctggagcagcaaggaagaagccaagcaagcttttaaggagcttctaaaagac
aagggtgtcccagcaagtgcatcatgggagcaggccatgaaactcgttagtagtgaccca
cgattcagtgccttgcccaaactgagtgagaagaagcagacttttaacgcctacaaggcc
cagcgggacaaggaggagaaagaggaggcccgactccgggcaaaggaggccaaagaggag
ctgcagcgcttcttggaacagcacaacaaaatgagctccatcactcgctacaggaaagca
gagcaaatgtttggggagctggaagtgtgggccatggtgccggagcgtgaccgcaaggag
atctatgacgatgttctctttttcttggcaaagaaggagaaggagcatgccaagcagctg
cgcaagaggaatatccaggctctgaagagcatcctggacagcatgagccgcgtcagcttc
cagaccacctggtccgaggcccagcagtacctgatggacaaccccagctttgccgaggat
gaggacctgcaaaacatggacaaggaagatgccttgatctgctttgaggaacacatccgg
actctggaaagggaggaggaggaagagcgcgagtgtggccgactacgagagagacgccag
cagcgcaagaacagggaggcctttcaggccttcttggacgagcttcatgaaaatgggcgc
ctgcactccatgtccacctggatggagctgtacccctcgctcagcactgacagacgcttt
gccaacatgttgggtcagcctggttccactcctctagacctgtttaaattctatgtggaa
gacctcaaggcacgcttccatgatgaaaagaagataatcaaggatattctcaaggaccgc
aacttctgcgtggaaataaacacgacctttgaagattttgcccatgtcatcagctttgac
aaacgtgctgctacccttgatgcaggcaacattaagctgactttcaacagtctgctggag
aaggccgaggcacgggagcgagagcgggagaaggaagaaactcgtaaattgcggcgcaag
gaggcagcattcaagagcatgttgcgtcaggcagctccccctctggaacctaataccacc
tgggatgaggtgcgcgagcggtttgtcaataacatagcttttgaacagatcacgctggaa
tcagaacgaatccgtctgtttcgtgagttcctgcaagtgctggagactgagtgtcaacac
ttccatgccaaggctaagaagcatgctaagaagcccaagaaacaccatcacaaacgctct
gcttcgggctcagaatcaggctcagatcatccccaccggggagccaaacgcaagaaacgg
aaccattctgaatcagctggttcaggagcatcttcttcacctgattcagagcacagcacc
aggcgctccaagagacagaagaagaagagtagaaaaaaaagagcgccaatcgcccagaaa
gtgaagctgagcgcaagaaagagcccagccgccctgacgagtgggagcgggagaagatcc
ctccacggcctgagggaagaggccactcccctccccggggtgccagaagggagcggagtg
gctgggatacctcagagagcgaggagctcagtgaaggggagctag
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