Sphaerodactylus townsendi (Townsend's least gecko): 125429340
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Entry
125429340 CDS
T08213
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
stow01009
]
125429340 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stow03019
]
125429340 (HDAC6)
04131 Membrane trafficking [BR:
stow04131
]
125429340 (HDAC6)
03036 Chromosome and associated proteins [BR:
stow03036
]
125429340 (HDAC6)
Enzymes [BR:
stow01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
125429340 (HDAC6)
Protein phosphatases and associated proteins [BR:
stow01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125429340 (HDAC6)
Messenger RNA biogenesis [BR:
stow03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
125429340 (HDAC6)
Membrane trafficking [BR:
stow04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
125429340 (HDAC6)
Chromosome and associated proteins [BR:
stow03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
125429340 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Me-amine-dh_L
Motif
Other DBs
NCBI-GeneID:
125429340
NCBI-ProteinID:
XP_048346332
LinkDB
All DBs
Position
LG03:176486220..176537971
Genome browser
AA seq
1147 aa
AA seq
DB search
MTGVWGASGTPIMASDLGDTSSLDPPSGPVLETQAPSRKAHRKGGLPEAKRKGRAKRLNK
DAEDLVSGMQHLDLAAERSVPVGTGLVWDERMTQFHCLWDESFPECPERLVAIREKLLQQ
ELLERCVPVTARELTQEEILLAHSPEYLVLMESTGTMREAELKSLSDTYDSVYLHPNSYR
CACLAGGSVLQLVEKVLSGELRNGLALVRPPGHHAQRNKMDGYCMFNNVGIAAQYARQKL
GVDRVLIVDWDVHHGQGTQYLFEDSPSVLYFSVHRYEEGGFWPHLPESDSHAVGRGRGEG
YNINVPWNQTGMRDADYLSAFLHLLLPVAFEFQPQLVLVAAGFDSVIGDPKGEMAASPAC
FAHLTHLLMPLAEGKLVLSLEGGYNLQSLAEGTCAALKTLLGDPCPLLEPPLFPCSSGLR
SVSQTLAAHCKYWKSLRRISADLPPEGEGDVCVALRAASPPPAMKILPGLAAGPMRPSSL
SRTGLVYDEKMTQHYNLWDSQHPELPQRVSRIFQRHGELRLTERCCRLPARLATEEELQM
CHSSAYVEAVKSTATMKPRDLHRHGNQYNSIFICASSYECARLAAGSAFSAVEAVLSGKV
QNCVAIVRPPGHHAESDTACGFCFFNSVALAARYAQRLAGHPIRVMILDWDVHHGNGTQH
MFEDDPSILYVSLHRYDNGTFFPTSEDADYDRVGSGPGEGFTVNVPWNCPRMGDAEYLAA
FHQIVMPISYEFNPELVLVSAGFDAARGDPLGGCLVTPDCYAHMTHLLMGLAGGKVALVL
EGGYNLESISESMTMCTRSLLGDPPPVLGRQKAPHPSALQSLAHVAAVHRKYWASLRLEV
PILVPERPRTRAGKGTPTPGDTPTQGPPQQLASPVVGPTEAVDDTMIALSSLHLENDTAE
AGETASSSLSPDSSPEGRARRKVGSSAGGAEPAEDSQSGSMSTGSPEGVELGEDCQSGST
ATASPEGAEAARNSQIGSPSTGSSSDEVETSAKETKVTPPDPSSASIEVILLDEAARGCS
PPCELLGEELADKGLFYAVTPLPWCPHLDSVLPVPSVGLNVLEPCSACGSRAENWVCLVC
YKVCCGRYINQHMVAHNSESGHPLVLSFEDLSVWCYGCQAYVHHPTLLAAKSQAHVEKFG
EGLPVAV
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgactggagtgtggggggcatctggcacacctataatggcttctgatctaggtgatact
tcaagtttggaccccccctctgggcccgttttggagactcaggcaccatcgaggaaagca
cacagaaaaggggggctgccagaggccaagcggaaggggcgggccaagaggttgaacaaa
gatgcggaggatctggtctcaggcatgcagcatttggaccttgctgcagaacgctcggtg
ccagtcgggacaggcctagtttgggatgagcggatgacgcagtttcactgcctgtgggat
gagagctttccagagtgcccagaaaggttggtggctatacgggaaaaactgctgcagcag
gagctgttggagcgttgcgtcccagtgacggcccgtgaactcacccaggaggagattctt
ttggctcacagtccggagtacctggtgctgatggaatccaccggaacaatgagggaggcg
gagctgaagtctctgtcagacacatatgattctgtctaccttcacccgaactcctaccgc
tgcgcctgcctcgccggaggttctgtcctgcaacttgtagagaaagtgctgtctggggag
ctccggaatgggctggcgttggtcagaccgcctggacaccatgcgcagcgcaacaagatg
gatggatactgcatgttcaacaatgtgggcattgcagcccagtatgcccggcagaagttg
ggggtggatcgggtgcttattgtcgattgggacgtccatcacggacaaggcacccagtac
ctctttgaggacagtcccagcgtcctttatttctctgtccaccgctacgaagaaggtgga
ttctggccccaccttcctgaatctgacagccatgccgtgggcagaggccggggagagggc
tacaatatcaacgtgccctggaaccagacaggaatgcgagatgccgactacctctctgcc
tttttacacctcctgctgcctgtagcctttgagttccagccccagctggtcctggtcgct
gcgggtttcgactctgtaatcggtgatcccaagggggagatggctgcttccccagcatgc
tttgctcacctgacacatttgctgatgccgctggccgagggcaagctggtcctgtctctg
gagggtgggtacaatcttcagtccttggcggagggaacctgtgcggccctgaagactctg
ctgggagacccctgtcccctgttggaacctccccttttcccatgtagcagcggcctccgc
tcagtgtcgcaaacgctcgcagctcactgcaagtactggaagagcctccggaggatcagt
gctgacttgcctccggagggtgagggagatgtttgcgttgctctgcgtgcagccagccct
ccgccggccatgaaaatcctgcctgggctagcagctggacccatgagaccctcgtccctt
tcccgtactggactggtctatgatgagaagatgacccagcattacaatctgtgggacagc
cagcatccagagctgccccagagggtctccaggatcttccagcgccacggggagttacgt
ctgactgagcgatgctgccgcctccctgcccgacttgctactgaagaggagttacagatg
tgccacagctcagcgtacgtggaggcggtgaagtccactgccaccatgaagccccgtgat
ctgcaccgccatggcaaccagtacaactccatcttcatctgtgccagctcctatgagtgt
gcccgtctggcagccggttctgcgttcagcgcagtagaagcggtgctttctgggaaggtc
cagaattgtgtagccattgtccgaccgcccgggcaccacgctgaatcagacacggcctgc
ggcttctgtttcttcaactcggtggccttggcagcacgatatgcccagcgcctggctgga
catcctataagggtgatgatccttgactgggatgttcaccatggcaatgggacacagcac
atgtttgaagatgatcccagcatcctgtacgtctccctccatcgctatgacaacggaacc
tttttccccacttctgaggatgccgactatgaccgggtgggcagcgggcctggcgagggc
ttcaccgttaacgtgccttggaactgtccccgcatgggagatgccgaatacctggctgcc
tttcaccagattgtcatgcctattagttatgagttcaatccagagctggtcctggtctct
gctggtttcgacgctgctcggggagacccgctgggcggctgccttgtgacaccagactgc
tacgcacacatgacccaccttctgatggggctggcaggcggcaaggtggctcttgtgctg
gaaggtggctacaacctggagtccatctctgagtccatgaccatgtgcacccggagcctt
ctaggggatccaccacctgtgctgggcaggcaaaaggcccctcaccccagtgccctgcag
tccttggcccacgtggctgccgtgcaccgcaagtactgggcaagccttcgcctggaagtg
cctattctagtgccggagaggcccaggactcgagccgggaagggaacccccactccagga
gacacccctacccagggccccccccagcagcttgcaagcccagtggttggacccacagag
gctgtggatgacacaatgatcgcattaagctccctccacctggaaaatgatactgcggag
gccggtgagacagcttccagctccctctctcctgactccagcccagaaggtagggctaga
cggaaagttgggagctctgccggtggggcagaaccggcagaggatagccagtcaggaagc
atgtcgacaggctctcctgaaggggtggaactaggagaggattgccagtcagggagcaca
gcaacagcctctcctgaaggagcagaggcagcaaggaatagccagataggaagcccatct
acaggaagttcctctgatgaagtggagacatcagccaaagagacaaaggtgaccccacca
gatccatcctccgcgtcaatagaggtcattctgcttgacgaagctgccaggggctgctcc
cccccttgtgagctgctgggagaggagctggcagataaagggctgttctatgccgtgacg
cccctcccctggtgcccccacctcgactcggtgctccccgtgccttctgtcggcctgaac
gtgctggagccctgctcggcttgcggcagccgggccgagaactgggtctgtctggtttgt
tataaggtttgctgcggccgctacattaaccagcacatggtagcccacaactcggaatcg
ggtcatcctctggtgctcagctttgaggacctctccgtctggtgctacgggtgccaagcc
tacgtccaccacccgactctcctcgccgccaagagccaggctcacgtggagaagttcggc
gagggcctgcctgtagctgtctga
DBGET
integrated database retrieval system
