Sphaerodactylus townsendi (Townsend's least gecko): 125430724
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Entry
125430724 CDS
T08213
Symbol
PAN3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125430724 (PAN3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stow03019
]
125430724 (PAN3)
Messenger RNA biogenesis [BR:
stow03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125430724 (PAN3)
mRNA degradation factors
3'-5' decay
Pan complex
125430724 (PAN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
Torus
zf-CCCH
zf_CCCH_4
zf-CCCH_4
Pkinase
Motif
Other DBs
NCBI-GeneID:
125430724
NCBI-ProteinID:
XP_048348844
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Position
LG04:31341504..31416949
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AA seq
877 aa
AA seq
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MNSGGLPCSSPVVAAAAGVAAAAAPVKLKFCRYYAKDKTCFYGEECQFLHEEPSAASAAC
PGPPPPPPPGALGGLPLGLPPGPAIPPVAASPGHGVGGGAGYPGHGAVAPVPKKPPELVA
GGGGAGMDGPRLAIPGIDGSALAEASLTDSYFSTSFIGVNGFGSPAEAKYPMMQRMTNSI
SSPSLLNDSAKSYAGHDPLTSPASSLFNDFAALSLSQRRKPRKYRLGMLEERIVPVGSKA
RKSKNPIGCLADRCKTGVPINMVWWNRVTENNLQAPNPAASEFIPKGGSTSRLGNMSQSN
ISAFSQALFSHPSMGGPANAGLAPGMSLSAGSSPLHSPKITPHTSPAPRRRSHTPNPANY
MVPTSASTPVTNAVSQPPATGQVIQKETVGGTTYFYTDTTPAPLTGMVFPNYHIYPPTAP
HVAYMQPKANAPSFFMADELRQELINRHLITMAQIDQADMPTVPTEVDSYHSLFPLEPLP
PPNRIQKTSNFGYITSCYKAVNSKDDLPYCLRRIHGFRLVNTKCMVLVDMWKKIQHSNIV
TLREVFTTKAFGEHSLVFAYDFHAGGETMMSRHFNDPSADAYFTKRKWGQHDGPLPRQHA
GLLPESLIWAYIVQLSSALRTIHTAGLACRVMDPTKILVTGKTRLRVNCVGVFDVLTFDN
SQNNPLALMAQYQQADLISLGKVVLALACNSLAGIQRENLQKAMELVTINYSSDLKNLIL
YLLTDQNRLRSVNDIMPMIGARFYTQLDAAQMRNDVIEEDLAKEVQNGRLFRLLAKLGTI
NERPEFQKDPAWSETGDRYLLKLFRDHLFHQVTEAGTPWIDLSHIISCLNKLDAGVPEKI
SLISRDEKSVLVVTYSDLKRCFENTFQELIAAANGQL
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcggcggactgccctgctcctccccggtggtggcggcggcggcgggggtggcg
gcggcagcggcgccggtgaagctcaagttctgccgctactacgccaaggacaagacgtgc
ttctacggcgaggagtgccagttcctccacgaggagccctccgccgcctccgccgcctgc
ccgggcccgccgccgccgccgcccccgggcgctctcggagggctgccgctcgggctcccg
ccgggcccggccatcccgcccgtggctgcctcgccgggccatggcgttggcggcggggct
ggctatccgggccacggggcggtggcgccggtgccgaagaagccccccgagctggtggcg
ggaggcggcggcgcggggatggacggaccgcggctggccattccaggaatagatggaagt
gctctagctgaagctagtcttacagactcctacttcagtaccagtttcattggtgttaat
ggatttggaagtcctgcagaagcaaagtatcctatgatgcagaggatgacaaacagcatc
agttcccctagccttctcaatgacagtgccaagtcttatgcaggccatgatcctctaact
tcacctgcttcgtccttgtttaatgactttgctgctctcagcttatctcaaaggagaaag
ccaaggaagtatcgactggggatgctggaagagaggatagttccggtgggatcaaaggcg
cgaaaatcaaagaatcctattggctgcctggctgacaggtgtaaaacaggagtacccatc
aatatggtttggtggaacagagtcacagaaaacaatttacaggcaccaaatcctgctgca
agtgagtttattccaaaaggaggatcgacctcccgactcggtaacatgtcacagtcaaat
atatctgccttctctcaagccttgttctctcatccttccatgggaggtcctgcaaatgct
gggctagctccaggaatgtcactgtcagcaggatcttctcctcttcattcccctaaaatt
actcctcacacatctcctgctcctagacgaagaagtcacacaccaaacccagcaaattat
atggtgcctactagtgcctctacacctgtcactaatgccgtctcccagcccccagctacc
ggtcaggtgattcagaaggaaactgtgggaggcacgacctatttctatactgacacaact
ccagctcctctaactggaatggtattcccaaactatcacatctatcctccaactgcccct
catgttgcttacatgcagccaaaagcaaacgcaccttccttctttatggcagatgaactc
agacaggagctgatcaacagacacttaattacgatggctcagatagaccaagcagatatg
cctactgtcccgacagaagtggacagctaccacagccttttccctttagaaccactgcca
ccacccaatcggatacagaaaacaagcaactttgggtacataacatcatgctacaaagct
gtaaatagcaaagatgatctgccatattgccttcggaggatacatggttttcgtcttgtt
aatacgaagtgcatggtgttagttgacatgtggaaaaaaatccagcactcgaatattgtc
acgctgcgagaagtattcaccacaaaagcattcggagagcattctcttgtgtttgcatac
gatttccatgctggaggagagacgatgatgagcaggcacttcaatgatcctagtgctgat
gcctatttcacaaaaagaaagtggggtcaacatgatggacctctgccccgacaacatgca
gggttgttacctgaatccttgatttgggcttacattgtgcagctcagctctgcattgcgg
accattcatacagcaggattggcctgtcgagtaatggacccaacaaagattctggtaact
ggtaaaacaaggttgagagtaaactgtgttggagtctttgatgtattaacattcgataac
agccaaaacaatcccttggcgctaatggcccaataccagcaagctgacttaatttccctc
gggaaggttgtgttggctttggcttgcaattcgttggcaggaattcagagagagaattta
cagaaagctatggaactggtgacaatcaactattcctctgatttgaagaatcttattttg
tatttgctgactgaccaaaacaggcttcggagcgtaaatgatatcatgcctatgattggt
gcacgattctacacgcagttggatgctgcccagatgagaaacgatgtaatagaagaagac
cttgcaaaggaagttcagaatggaagattatttcgacttcttgcaaaattgggaacaatc
aatgagaggccagaatttcagaaggacccagcatggtcagaaactggagacaggtatctt
ctgaagctctttagggatcaccttttccatcaggtgacagaagcaggtactccctggata
gacctcagtcacattatctcttgtcttaacaagctagatgctggtgtgccagaaaaaata
agcctcatttccagagatgagaagagtgtacttgtggtaacgtacagcgacctgaagcgc
tgctttgaaaacacttttcaagaactgattgcagccgcaaacgggcagttgtag
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