Sphaerodactylus townsendi (Townsend's least gecko): 125430787
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Entry
125430787 CDS
T08213
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125430787 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stow03021
]
125430787 (PCF11)
03019 Messenger RNA biogenesis [BR:
stow03019
]
125430787 (PCF11)
Transcription machinery [BR:
stow03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125430787 (PCF11)
Messenger RNA biogenesis [BR:
stow03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
125430787 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
CID
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
125430787
NCBI-ProteinID:
XP_048348967
LinkDB
All DBs
Position
LG04:12416692..12444425
Genome browser
AA seq
1699 aa
AA seq
DB search
MSGSSSSSSSSEGGGGGGVGSEDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDI
VSLIEAQIAKAPANEKLPVMYLMDSIVKNVGREYLSAFPKNLVATFVNVFEKVDENTRKS
LFKLRSTWDEIFPLKKLYALDVRVNSIDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPP
APSSTACPLVISSPIVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLA
VSLNVQQNTSSMGSVQPPLKPHLPQPPHMPVKPLHPACLPPEKTRLSPLHDVKMANRDPR
LNRMSQHLPHAKDQSHRKDFVMNPASQLDKPSKILQAEKHNASKQEKLRLGDKMQKKEYD
QLDSKLKSPSPLQNKLLHSKDTRNQECENMRASEMSKRDPRLKKHLLDKPEGKDDDAKEK
RRSTERKDKEEHRSVGSRSKIINGVVQKQDASMEESGKQGRSSTRKRSRSPRSRSPSSHS
PKRRDRRSPKRRLRSLSPSGPKTLKPRQLGPKQPHPEDFGQGSRDERGSNKRNLKQEMRD
SRRPKKMHEDRPQEGMNQHSSRASSEPKENVENWQGSKSSKRWKSGWEENKNPQPAEDHQ
GLGKSPHPRHRDTWASSKGVPAPRTPKQHRLSVDANLQIPKELTVANKRDLLKKANERMS
SGEITQDEFLSLVHQIRQLFQYQEEKHRCNVWDSPSAEKGILKKKPLLSDADLIYHEHKA
KLIRTQVQHSFPRLNMLDPDEMLDYHLSDAFLSELECEQTKSKQFGERSRRHSPVSGNRP
YSDNSTHDSRRRHDEPNSSKGVREEQRSPFSDQYKRSRYEDTEKHFTESSGARFGVIDGK
PRFGGLIEERSHFEGSPRHPSSRAGGEGQASHFEGPANTNSRMEGPPAQNSLRFEGAMGQ
PTSQCDGPPGPSGGKGSLLFDGPPGQMGGGPLRFEGPSGQVGAGSAIRFENPMGQPTGSL
RFEAPTGQAMGGMRFEGPHGQPPGGLRFEAPHCQPSTGMRFEGPHSQPSSGVRFEGPLDQ
TSGGMRFDGPLGQPSGGMRFEGPHGQPSSGMRFEGPHDHSVRPHGPPGAGLRFDAPHSQP
VGPHGQPGAGLRFEGPLMQPVGPHGQPAGSLRFEAPHGQPLGPPGQPTGGLRFEGPHGQP
RFEGPHGQPGIGPRFEGPTVQSGGGLAFEGPMNQTGPRFDSRFDGQPSLLRRLDGLHVQP
GPRFEMGPAQQTPPRFDGPPGQPVQPRFDTPIPQRFDDPQHQQAARFDLPLGQGPRMENV
ANLPASRHETPPYGQSGPYNEPSNQPYSGPSQGMPFQRPEQMFDSPQGPSFSGPPVSTAQ
NFPNALNRAPGHYYDDKNLQGPQFGNFNNMAGNVQQQMPVMPVGAVQPVPFSQAQPLLPV
HVQNPGTFVQTQAGNAPLSYADNHLGQLDVNELYSKLLSTGILKVLQPDATSSQPSEVST
QPTLEEDEEDQDQSEDQEVPDLTNFVIEELKQRHDSVINRLYTGIQCYSCGMRFTTSQTD
VYADHLDWHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEV
VLKTQEAAKEKEFQSVPAGPAGVDESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHP
SCYEDYQNTSSFDSTPSPSKTPVENPLNMMLNIVKQEVPDSCNSPQIKEESEEKLDECMA
GSSSVLAEIKTEPEKVESV
NT seq
5100 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcagctccagcagcagcagcagcagcgaagggggcggcggcggcggggtcggc
agcgaggacgcgtgccgcgactaccagtcgtcgctggaggacctgaccttcaacagcaag
ccccacatcaacatgctgaccatcctggccgaggagaacgtgcccttcgccaaggacatc
gtctcgctcatcgaggcgcaaatcgccaaggcacctgctaatgagaaacttcctgttatg
tacctaatggactccattgtcaagaatgttggaagagagtatctttctgcgtttcctaaa
aacctagttgcaacatttgtaaatgtgtttgaaaaggtggatgaaaatactaggaaaagt
ttatttaagttgcgttctacgtgggatgagattttccctttgaagaagctctatgccctt
gatgtgcgggtgaattcaatagatcctgcttggccgattaagccgctgccccccaatgtg
aatacttctagcatccacgtgaatcctaagtttttaaataaatcgcctgaggaacctcct
gctcctagttctacggcttgccctcttgttatctcttctccaattgttcctgaaattcaa
aagaacttgacgcaagagcagctaataagacaacagctactggccaagcaaaaacagttg
ttagaacttcagcagaaaaaattagaactggagttagagcagactaaagcacaactggca
gtttctctgaatgtccagcaaaatacatccagtatgggttcagtccagccgcctctgaag
ccacatcttccacagccaccccacatgccagttaaacctctccacccagcttgcctgcct
cctgaaaaaacccgtctctctccacttcacgatgtcaaaatggccaaccgagatcctcgt
ctgaaccgaatgagtcagcatcttcctcatgctaaagatcagagtcacaggaaggatttt
gtaatgaatcccgcaagtcagctcgacaagcctagcaagattctgcaggccgaaaaacac
aacgcatcgaaacaagaaaagctcaggctgggggacaaaatgcagaagaaagagtacgat
cagttggattcaaagttgaaatctccatctcccttgcaaaacaagcttcttcactctaaa
gacaccagaaaccaagagtgcgagaatatgagagcgtctgagatgagcaaaagagaccca
cggctgaaaaaacatcttctggataagcccgagggtaaagatgatgatgccaaagaaaag
agaagaagtacagagagaaaagataaagaagaacatcgatctgttggcagcaggagtaaa
attattaacggcgtggtccaaaagcaagatgccagcatggaagagtcgggaaaacaagga
aggtcaagtactaggaagaggtcacgttctcctcgatctcggtcgccgtcttcccattct
ccgaaacgaagagatcggagatcccccaagcgaaggctgcgaagcctttctccttcggga
ccaaaaacgttgaaacctcggcagttgggtcccaagcagccccacccggaagattttggg
caagggtcccgggatgaaaggggctctaataagaggaacctcaaacaggaaatgagggat
tcgaggaggccaaagaaaatgcacgaagaccggccgcaggaggggatgaatcagcactct
tcgagagcaagttcagaacccaaagaaaatgtggaaaattggcagggttccaagtcaagc
aaacggtggaagtctggttgggaggaaaataaaaatcctcaacctgctgaagaccatcag
ggacttggtaaatcacctcacccaaggcacagggacacctgggcaagtagtaaaggtgtg
ccggcacctcgcacaccaaagcagcaccgattaagcgtggatgctaacttgcagattccc
aaagaattaactgtggcgaacaagagagatttgcttaagaaggcaaacgaacgcatgtcg
tccggggaaataacgcaagatgagttcctgagtttggttcaccagattcgtcagctcttc
caataccaggaagaaaaacacagatgtaacgtgtgggatagcccctcagcggaaaagggc
attttgaagaagaagcctctattgtccgatgccgatttaatctatcatgaacacaaagct
aagctaatacggacgcaagttcagcattcgtttcccagactcaacatgctggatcctgac
gaaatgctagactatcacctaagtgacgcgtttctttccgagttggaatgcgagcaaacg
aaaagcaaacagtttggggagcgatcaaggcggcattctcctgtgagtggcaacagacca
tactcggataattcaacccatgatagtcggagaaggcacgacgaacccaattcttcaaaa
ggtgttcgagaagagcagagatctccatttagcgaccagtacaagagatcgagatacgaa
gatacagagaaacattttactgagagttcaggagcacggtttggggtcatcgatggaaag
ccaagatttggaggcctgatagaggaaaggtctcattttgagggctctcctaggcatccc
agttcaagggcaggcggagaaggacaagcgagccattttgaagggcctgctaatacaaat
tccagaatggaagggccaccagcacagaacagtttaaggttcgaaggggccatggggcag
ccaacatctcagtgtgatggcccaccaggaccgtctggaggaaaaggttctctcctgttc
gatggaccaccagggcagatgggtggtggtcccctgaggtttgaagggccctcagggcag
gtcggtgcagggtctgctatacgttttgaaaaccctatggggcagccaactggaagctta
agatttgaggcacccacaggtcaagctatgggtggcatgaggtttgaagggcctcatggt
cagccaccaggcgggttgaggtttgaagcgccccattgccagccatctactggaatgagg
tttgagggaccacacagtcagccatcttctggggtgaggtttgaagggcctcttgatcag
acgtcaggtgggatgaggtttgacggccctcttggtcagccgtcaggcggaatgaggttt
gagggtccacatggccagccttcgagcggaatgagatttgaagggcctcatgaccattct
gtgagacctcacggtcccccaggagctggactgagatttgacgcaccccacagtcaaccg
gtaggtcctcatggtcaacctggggctgggctacggttcgaagggccacttatgcagcca
gtagggccccatggtcagccagcaggtagtttgcgctttgaagccccccatggtcagccc
ttgggcccacctggtcagccaacaggtggacttagatttgaggggccccatggccaacct
agatttgaggggccacacggacagccagggattggtcctagatttgagggccccacagtc
caatctggaggtggacttgcatttgaagggccgatgaaccaaactggccccaggtttgat
tccagatttgatggccagccatcacttttgcgaagactggacggattgcatgtacagccc
ggtcccaggtttgaaatggggcccgcacagcagactccacctcggtttgacgggccaccc
ggtcagcctgtacagcccagatttgatacgccgatacctcagaggtttgacgaccctcag
catcaacaagcagcacgatttgatctccctctcggtcaaggcccgagaatggagaacgta
gcaaatctccccgcctcaaggcatgaaacgccgccgtatggacaaagtggaccatataac
gaaccttccaaccagccttatagtgggccgtcacaaggaatgccatttcaaagaccagag
caaatgtttgattctcctcaaggaccaagtttcagcgggccgcccgtttccacagcacag
aactttcctaatgcacttaacagggcccctggacattactatgacgacaagaaccttcag
ggacctcagtttggaaacttcaataatatggcggggaatgttcagcagcagatgcctgtt
atgccagttggagctgttcagcctgtacctttcagtcaagcgcagccactcttaccagtt
catgttcaaaatcctggtacctttgtccagactcaagcaggaaacgccccactttcctac
gctgataatcatcttggacagcttgatgtaaacgagttgtactcaaagctgctttcaaca
ggaatccttaaagttttacaacctgatgcaacttcctcccaacccagtgaagtttccacc
cagccaactctggaggaagacgaagaggaccaggaccagagtgaagatcaggaagtccca
gacctcactaattttgtaatagaggaactgaaacagcgtcacgacagcgttatcaaccgg
ctgtacaccggcattcagtgttactcttgcggcatgaggttcacgacatcgcagacagat
gtgtacgcggaccacttggactggcactatcgccagaaccgcacagaaaaagacgtcagc
aggaaagtcactcacagaagatggtactacagtttgacggactggatagagtttgaagaa
atagctgatctagaggagcgtgcaaagagccagttctttgaaaaagtacatgaagaagtt
gtgttaaaaacacaagaagctgctaaggagaaagagtttcagagtgttcctgcagggcct
gctggagtagatgagagctgtgaaatttgccaggagcaatttgagcaatattgggacgag
gaagaggaagagtggcacttaaaaaatgccattagagtagacgaaaagatctaccatcca
tcgtgttacgaagattatcaaaatacctcttcattcgattcgacgccttctcctagcaag
acccccgtggaaaacccactaaacatgatgttgaatattgtcaagcaagaggttccggat
tcctgcaacagtccccaaatcaaagaggagtcggaggaaaagcttgacgaatgtatggct
gggagctcgtcggtgcttgccgaaattaaaacggaacctgaaaaggttgagtcggtttaa
DBGET
integrated database retrieval system
