Sphaerodactylus townsendi (Townsend's least gecko): 125432043
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Entry
125432043 CDS
T08213
Symbol
PCDH20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
125432043 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
stow01009
]
125432043 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
stow04515
]
125432043 (PCDH20)
Protein phosphatases and associated proteins [BR:
stow01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125432043 (PCDH20)
Cell adhesion molecules [BR:
stow04515
]
Cadherins
Protocadherins
125432043 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
125432043
NCBI-ProteinID:
XP_048351320
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All DBs
Position
LG04:130520026..130527323
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AA seq
950 aa
AA seq
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MRRPGGSQAAMGQPPSPGSSSSSAGQETLRNLFLFLLFLGPFNCFASYSRATELFYSINE
GLPTGVLIGNVAQDLQHQGVVEEEAGVEGKQQLPLQWEKTPLSFCLASQGLGSSYVNLDN
RTGELRTSTREIDREELCTEDNVGSSVVASSSSSAVLSSESCLHCTTCWMKCWSVAAWNI
SSVWLQRCEDRLHPHDVVPTTTAPQASPPTWQIRLFVPENSPINTRFAIEHPAVDPDMGT
NGVQTYHLQENYGVFTLDVEENENGERTPYLIVMGALDRETRDEYVTLISAEDGGVPPLV
GSATLTIGISDINDNCPQFNETQLNVTVFGNSSLGLYIASVHATDADQGINAEITYSYSQ
KVPQPSRALFHLDESTGTITLAKRIDGDMPRLHRLSVLANSPGCIPAVITVVVSIVKVML
RPPEIIPRFIANEAEGVVYLRELEPVHTPIAFFTIKDPDEKYKVNCYLEGDGPFRLSPYK
PYHNEYLLETTKPLDFETQRYYDVSVVAWNSEGFHVTKIMKVHILDDNDNTPVFSQPLVE
LTIEENNAPNAFLTKLHATDADSGERGQIFYFLGPEAPSYFSLDKTTGVLTVSTQLDREE
REKYRYTVRAVDCGMPPRESVATVTILVLDKNDNSPRFINKDFSFFVPENFPGFGEIGVI
SVTDADIGQNGWVALSVVNSSDIFVIDTGKGVLRAKVSLDREQQSSYTLWVEAVDGGDPP
LSSVAKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPITEVYAVDNDTGMNAVIA
YSIIGRRGPRPDSFKIDAKSGNITLEESLMQNDYGLYRLLVKVSDHGYPEPLHSTVMVNL
FVNDTMSNESYIESLLKKEPDINIEEKEPQISIEPTHAKEETASCMPTLVALSVISLGSI
TLVTGMGIYICLRKGKKYYRGDENLEVQIPLNGRLGLHMLEKKPVEISNI
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgcccgggagggagccaggcggccatggggcagccccccagcccgggcagcagc
agcagcagcgccggccaggagaccctgcggaatttattccttttcctgctcttcctggga
cctttcaactgttttgcgagctacagccgtgccactgaactcttttacagcattaatgaa
gggctgcccaccggcgtcctcattgggaacgtggcccaggatttacaacatcagggggta
gtagaggaagaggcaggggtggaagggaaacagcagctgcccctgcagtgggagaaaacc
cctctctccttctgcctggcctcccagggactgggcagttcatacgtaaacctggacaat
cggacgggagagctgcgcacctctacccgggaaattgaccgggaggaactgtgtacagag
gataacgtgggatcttccgtggtcgcctcgtcatcctcctctgcagtactgtcttctgag
tcatgcttgcactgcaccacttgctggatgaaatgctggagtgttgccgcatggaatatt
tcctcggtctggctccaaaggtgtgaagatcgcttgcatccacatgatgtcgtcccaacg
acaacagcaccgcaggcttccccacccacctggcagatacgcctctttgtgcctgagaat
tcacccatcaatacccgctttgccatagagcatccggctgtggacccggacatggggact
aatggagtccagacctaccatttgcaagagaactatggggtttttacgttggatgtagag
gagaatgaaaatggggaaaggacgccgtacctgatcgtcatgggcgctttggacagggaa
actagggatgagtatgtgaccctcataagtgcagaggacgggggagtccccccgctagtg
ggcagtgccaccctcacgattggtatcagtgacatcaatgacaattgtccccagttcaat
gagactcaactgaacgtcactgtgtttgggaactcaagccttggtttgtacatagcctct
gtccatgctacagatgcagaccagggaatcaatgcagagattacctactcctacagccag
aaggtgccacaaccgtcccgggctttgtttcacctcgacgaaagcacaggaaccatcacg
ctcgccaagaggattgacggggatatgcctcgtcttcacaggttgagcgtcttggccaac
agtcccggttgcatcccggctgtgatcactgttgtcgtgtccattgtgaaagtcatgctg
agaccgcctgaaataatccctcggttcatcgcaaatgaagccgagggtgtggtttatctg
agagagctggaaccggttcacacacccattgcgttttttaccataaaagacccggatgag
aaatacaaagtcaattgctacttggaaggggacggcccattcagactgtcaccgtacaaa
ccttaccataacgaatacttgctggaaactacaaagcctttggattttgagactcagcgg
tactatgacgtatcagtggttgcatggaattcagaaggattccacgtcaccaaaataatg
aaggtgcacattctcgatgataatgacaacacacccgtgttctcccaacccctggtagaa
ttaactattgaggaaaataatgctccgaatgcttttttgaccaagctccacgcaacagat
gctgatagcggagaaagaggacaaatcttttatttcctagggcctgaggccccttcgtat
ttctctctagataaaaccactggagtccttacagtttccacccaactggatagagaagaa
agagaaaaataccgctataccgtcagggcggtagattgtggaatgcctccccgagaatca
gttgccaccgtgaccatcttagtattggataaaaatgataacagcccgagatttattaac
aaggatttcagtttttttgtgccagagaacttcccgggctttggcgaaattggagttata
agtgtcacagacgcagatatagggcaaaacggatgggttgccctttctgtcgtgaatagc
agcgacatctttgttattgacacgggcaaaggagtgttgagggctaaggtctctctggac
agggaacagcagagttcgtacaccttgtgggttgaagcagtggatgggggtgaccctcct
ttgtcctccgtggcaaaaatcaccatccttctgcttgatataaacgacaacccaccattg
gtcctgttccctcagtcaaatatgtcttacctcctagtgctcccctctacactgcctggc
tctccaatcacggaagtctatgctgtagataacgacaccggcatgaatgcagtcatagcg
tacagtatcatagggagaagaggccctcggccagactccttcaaaattgatgccaagtcg
ggcaatattactctggaggagtcactaatgcagaatgattatggcctctatcgacttctg
gtgaaagttagcgatcacggttacccggaaccgctccattccactgtcatggtgaacctc
tttgtcaacgacacaatgagtaatgagagctacattgaaagtctgctaaaaaaggagcca
gatataaatattgaagaaaaagagccacagatttcaatagagcctacacacgcgaaagaa
gaaacagcatcttgcatgccaaccttagtggcactatctgtaataagcctgggctcaatc
actctggtgactgggatgggtatttacatctgcctaaggaaaggaaagaaatattaccga
ggagatgaaaacttggaggtacaaatcccattaaatgggagactcggcctgcatatgctc
gagaagaaaccagtggagatctctaacatctga
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