Sphaerodactylus townsendi (Townsend's least gecko): 125432595
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Entry
125432595 CDS
T08213
Symbol
COL9A1
Name
(RefSeq) collagen alpha-1(IX) chain
KO
K08131
collagen type IX alpha
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow04510
Focal adhesion
stow04512
ECM-receptor interaction
stow04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125432595 (COL9A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125432595 (COL9A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125432595 (COL9A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
stow00535
]
125432595 (COL9A1)
Proteoglycans [BR:
stow00535
]
Extracellular matrix (ECM) proteoglycans
Others
125432595 (COL9A1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
125432595
NCBI-ProteinID:
XP_048352266
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Position
LG01:142777157..142863360
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AA seq
921 aa
AA seq
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MKDNRKYPVFFYMCCFLGFPASATIQQKTRFPLTFSSNTQADLCPIRRIGQDDLPGYDLI
SQFQLDKAASRGIIRRVVGSTALQVAYKLGTNVDFRIPTRSLYPNGLPDEYSILTTFRMT
GSTLQKYWSFWQVLDSSGKEQVGLKFNGQAKSLEYSYRGTDGRLQTATFLDLPYLFDSQW
HKVMIGIEKSTATLYVDCIMIQTLSIRPRGKININGFTTLGKLKNNPQISVPFEIQWMLI
HCDPQRPQRETCGELIGSISISQTTIERGPPGPQGPPGPPGPPGVPGIDGIDGDRGPNGP
PGLLGPDGEPGKPGTAGLPGEPGADGLTGPDGSLGPIGPRGQKGEPGLPGGRGLPGKGIP
GFPGPSGIAGLPGEVGRVGPPGDSGKRGPPGPPGLPGPRGIVGLHDGDPLCPNACPTGRP
GYAGLIGMKGHKGAKGEVGEPGKQGHKGEEGEQGGIGEVGTQGTPGPQGLRGITGILGPK
GDKGARGLEGEPGPRGLPGASGDQGQRGALGEMGPKGDGGPQGIRGITGLPGPKGEGGLP
GVDGREGIPGMPGTKGEPGKPGPPGDVGIQGLPGLPGSPGAKGVGGQKGNTGAPGIPGLM
GNSGKPGEQGIQGGQGPIGPRGPPGGRGEPGPAGPPGIPGKMGAEGNLGLPGLPGPPGLP
GATGDRGIVGEPGPKGEQGSAGGEGEPGGKGDFGDMGLPGPKGSVGNPGEPGSRGPEGSR
GLSGIEGLRGPPGPRGMQGEQGAPGLPGSQGPAGRMPTDGHIKQVCMRVMQEQLAQLAAS
LRRPEFGAPGLPGRPGPPGVPGSSGENGFPGQAGSRGLPGLKGPPGEIGLKGIKGETGEK
GERGFPGRGPKGLPGTTGLPGEAGKASYGTDGRDGERGPPGEAGLPGVPGPPGPPGPAGY
CEPSDCTVRAGIRAGKNVKGP
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacaacaggaaatatccagttttcttctacatgtgctgttttttggggtttcca
gcatcagctaccattcaacagaagacaaggtttccattaacattcagttccaacacacag
gctgacctctgcccaattagaaggattggccaagatgacttaccaggatatgatctgatc
tcacagttccagcttgataaagcagcttccagaggcattatccggcgagtggtgggctcc
acagctttacaagtggcttacaagttaggaacaaatgtagacttcaggattccaactaga
tctttatatcctaatggattacctgatgaatactccattctaactacttttcgaatgact
ggaagtacgctgcagaagtactggagcttttggcaagttctggactcttctggaaaagaa
caagttggattgaagtttaatggacaagccaagtctcttgaatactcatatagaggaact
gatggaagactacagacagcaacatttttggatttgccctatttgtttgattcccaatgg
cacaaggtcatgatcggcatagaaaaaagcactgccactctttatgttgactgtattatg
atacagaccctgagtataaggccacggggaaagatcaacatcaatggctttaccacactt
ggaaaactgaaaaataatcctcagatttcagttccgtttgaaatccagtggatgctgatt
cattgtgaccctcaacgaccccaaagagaaacttgcggtgaacttattggcagcatctcg
ataagccagacaactatcgagagaggccccccaggtccacagggtcccccaggcccccca
ggcccaccaggagttcctggcattgatggtatagacggggacagaggtcctaatgggccc
ccaggccttctgggcccagatggtgaaccaggcaaaccaggaaccgctggattgccagga
gaaccaggagctgatggattgacaggaccagatggatcattaggcccaattggaccaaga
ggacaaaagggtgaacctgggttgcctggaggccgtggacttcctggaaaaggaattcct
ggatttcctggtccttctggtatagcaggacttcctggggaagtgggcagagttggacca
cctggtgactctggaaagagaggccctccaggaccaccagggcttcctggccctagggga
attgttgggcttcatgatggagacccactgtgtcctaatgcttgccccactggacgacca
ggttatgctgggctaataggcatgaagggtcacaaaggtgcaaaaggagaggttggtgaa
ccaggaaaacaaggccataagggagaagaaggtgaacaaggaggcataggtgaagttgga
actcaaggcactccaggacctcaagggttaaggggtataactggcattttgggacctaaa
ggtgataaaggtgctcggggccttgagggagagcctggtcctcgaggacttcctggggct
tctggtgatcaagggcagagaggtgcattgggagaaatgggacccaaaggggacggaggg
ccacaaggtattagaggaattactggcctccctgggccaaaaggagaagggggcttacca
ggagttgatggccgtgaagggatccctggcatgcctggaacaaagggtgaacccggaaaa
ccaggccctccaggtgatgtaggaattcagggactgccaggtttacccggctctccagga
gcaaaaggtgttggtggccaaaagggtaacacaggtgctcctggaatacctggcttgatg
ggaaattcgggtaaacctggagaacaagggatacaaggaggacaaggcccaattggaccc
agagggccacctggcggcagaggagagccaggtcctgcaggcccgccaggcataccaggt
aaaatgggtgctgagggtaacctaggccttccagggttacctgggcctccaggacttcct
ggtgctactggtgacaggggtatagttggtgaaccaggacccaaaggagaacaaggctct
gctggtggagaaggggagccaggaggaaaaggagactttggcgacatgggtttgccaggc
cctaaaggatctgttgggaatcctggtgaacctgggtcacgtgggcctgaaggcagtcgt
ggtttgtctggtatagaaggactgcgtgggccacctggacctcgtggtatgcaaggggaa
caaggtgctccagggctacctggaagccagggtccagccggtcgcatgccaactgatgga
cacattaagcaggtttgcatgagagtaatgcaagaacaactggctcagttggctgccagt
cttcggaggcctgaatttggtgctcctggcctcccaggtcgacctggaccacctggggtt
cctggatcttctggagaaaatggcttcccaggacaggctggatcccgggggctgcctggc
cttaagggtcctcctggtgaaattgggctgaaagggatcaaaggtgaaactggagaaaag
ggggagagagggttccctggtcgagggcccaaagggttaccaggaacaacaggactccca
ggagaagcaggcaaggccagctatggcacagatggacgagatggtgaaagaggcccacct
ggagaggctggtctacctggtgtccctggccctcctggcccgcctggccctgctggctat
tgtgagccatcagactgtacggtgcgagcaggaatacgagccggaaaaaacgtgaaaggg
ccatga
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