Sphaerodactylus townsendi (Townsend's least gecko): 125433415
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Entry
125433415 CDS
T08213
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
VWA
NDNF
CBM_4_9
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
125433415
NCBI-ProteinID:
XP_048353877
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All DBs
Position
LG05:129594024..129809637
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AA seq
1349 aa
AA seq
DB search
MQRNKVTLLARGLFWIPCMMLVSHIILQVCGQGSNRLKLTVLSEDRLQMKWKETEGNTNG
YKVRVKPMAGDSEQEVMLKTRIAKATVGGLSPTKEYSLQIYILNGSQEALFIKRRFVIEE
LKNFSQVRSNRRNPTSAPEKTEMFLGTTAAEYLLETEATFPPTSETLIRKDEPDKKRPKA
GVPKDGIENVPIAEPTAMLASPTAVKITLLPSPIEFEIDHLAQEKTARENLRRVFPFQCD
SSAMTDIIFLVDGSWSIGRNNFRLIREFLAALVTPFNIAQDKIRVAKCFSSETQTLRGLM
KFLRGCDPVKTAPASSGAHLSPSNLVVKEVTSRSVHLIWKPPVIPPKKYRVVYYPSRGGI
PKEVVLDGSSTSAQLCNLTSHTEYLVSVFPIYENAVGDGLRGITSTLPLSAPRSLRASEI
SHNSIKLTWQPADGATQYLVLCSSAPNGATDDTKEVKVVEPEVLLGDLSPSTEYSLAVYA
MYGEDASDPASIQETTLALSPPPRLSFSDISHGSVRVNWEVTSRAVKTHQVTYMSSRGSN
TGELEVPGNVSSAVLMPLSSLTKYFVSVTSIYNEGTSFPVTGNFTTLKVPPPSHLKVTEL
SGSEIRLEWEAIAASDVVVYQIKWNVLGEGRSQELSVAGNLAAAVLPGLKKNTEYQISIW
AYYKDGARSDTVSVRHRTTAKNPPVAIFVDSETPNSLQVHWSPPDGAVQHYRITYAPETS
PNGQEMIVLPGKSRAVTLHSLLPGTRYTVTIFAVYATGESDPISATGQTASTLARLPLSR
GSVPFKADGCPGLDSAEGSLQGYDLMEAFGLREKEYASIKGVALEPYIFLGTHTYTLYRD
IQLTRQTSEVFASGIPSEYTVTFLLRLLPESPRESFAVWQVTDEDFQPLLGIVLDPNKKS
LTYFRRDYDADIEEVTFDQQDVKKLFYGSFHKVHVSVSHSRVKLYIDCKKIAEKALGASE
TVSTAGFVMLGKLTRTRGPRSGSAAFQLQSLRIVCSSLWAEEDRCCEVPALRDEEVCPSF
LPSCTCTSGIPGVPGPPGPPGSPGRRGPQGEQGEPGPKGAPGPPGQVGPEGPGGQQGTPG
SEGLAVQGPIGPPGVKGDKGDSGNPGIQGIMGPQGAPGKDGIQGAKGVRGLEGTAGPPGP
PGPRGFQGIAGARGSPGEKGPPGEVGPTGLPGPKGERGEKGEPQSMATIYHLVNQACERL
IQSHVLKFDSFIHEHTRKPAPMWEDKLKAGEPGPPGLPGPPGMKGERGEVGMPGQPGRDG
YPGERGSPGPKGEKGYSGPSVDGLQGPRGLAGPVGETPLGKQGPKGASGNTGSPGFPGAR
GQSGELGPDGGCITSDCYEEILRDAASIP
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagaaacaaggtcaccctgttggctcgtgggctcttctggattccctgcatgatg
cttgtgagtcacatcattttgcaggtgtgtggtcaaggatcgaaccggttgaagctgaca
gtcctgtcagaagacagactgcagatgaaatggaaagagacagaaggaaacacgaatggg
tacaaagtccgtgtgaaacccatggcaggagattcagaacaggaagtcatgctcaaaacc
aggattgccaaagcaacggtgggggggttgagccccacaaaggaatactctctgcagatc
tacatcctaaatggttctcaagaggccctcttcatcaagaggcggtttgtgattgaagaa
ctaaaaaacttctcccaagttagaagtaacagaaggaacccaactagtgccccagaaaag
acagagatgtttctggggactacagctgccgaatacctcctggagacagaagccaccttc
ccacctaccagtgaaaccctgataagaaaggatgagccagacaagaaaaggccaaaagcg
ggcgtgcccaaagacgggattgaaaatgtgcccattgcagagccgacagcaatgctggcg
tccccaacagccgtgaagataacgctgctcccaagtccgatagaattcgaaatagaccat
cttgcccaagagaaaactgccagggaaaacttaaggagagtttttccctttcagtgtgac
tcctctgcaatgactgacatcatctttctggtggacggctcgtggagtatcggccgcaac
aatttcaggctcatcagagaattcctggctgccttggttacaccgttcaacatcgctcag
gacaagatccgagtagcgaaatgcttttctagtgagacccagaccctgcggggtctgatg
aaattcctcaggggctgtgatccagtaaaaactgccccagcaagcagcggggcccacctg
agcccaagcaacctggttgtaaaagaggtgacttccagaagcgtccacctcatctggaag
cctccagtgataccacccaagaagtacagggtagtttactacccatctaggggcgggatc
cctaaagaggtcgttttagatggttcctccacctctgcacagctctgcaatcttacctcc
cacaccgaatatctggtttcagtatttcccatttatgagaatgctgttggagacgggctc
cgaggaatcacctcaacactacctctgtctgctccccgttccctccgagcatccgagatc
agccacaacagcataaaactcacctggcagccagcagatggcgctacgcagtacctggtc
ctttgttcttcggcacccaatggagcaactgatgatacgaaagaggtgaaagtcgtagaa
cctgaagttctgcttggagatttatcacccagtacagaatattcgctagctgtgtatgca
atgtacggagaagatgctagcgaccctgcaagtattcaggaaacaaccttggccctgagc
cctccaccgcgcctgagtttctcagatatcagccatggctcagtcagggttaactgggag
gtgacatcgcgagctgtgaaaactcaccaggtgacatatatgtccagcagagggagcaac
actggcgagttggaggttcctggcaacgtttcctctgctgtgctgatgcctctgtcatcc
ctgacaaaatattttgtcagcgtgacttccatttacaatgaaggcacttcctttccagtt
acgggcaactttactacgttaaaggtgccaccaccgagccacttgaaggtcacagagctc
tcgggaagcgagatccggctggagtgggaagcaatcgcggcatccgatgtcgtcgtctac
cagatcaaatggaacgtgctcggtgaagggaggtcgcaggagctgtctgttgctggaaac
ttggctgccgctgttctgcccggtctgaaaaagaacaccgaataccagatatcgatttgg
gcgtattacaaggacggggctcggagcgataccgtctctgttcggcacaggaccactgcc
aagaatccgcctgtggcaatctttgtggattcggaaacccccaacagcctgcaggtccac
tggagtcccccagatggcgcagttcagcactacagaatcacctacgctccagaaacaagc
ccgaacggccaggagatgatagtgcttccaggtaaaagccgggctgttactcttcactca
ctccttcctggcacgaggtacacagtgactatttttgcagtgtatgccacaggagagagc
gatcctatctctgcaactggccagacagcctcaaccttggccaggctgcccctatcaaga
ggatcggtccctttcaaagctgatggctgtcccggtcttgactcagcagaagggtctcta
caagggtatgacctgatggaagcatttgggctcagggaaaaagagtatgcctccattaaa
ggtgtggccctggagccgtacatcttccttgggactcacacgtacaccctctacagagat
atccagctgacccgtcaaacaagcgaagtgttcgcatctgggattccaagcgaatacacg
gtcaccttcctactccgacttctgccagagagccccagggaatcctttgctgtgtggcag
gtgacggatgaagacttccagccgcttcttggcatcgtgctcgatcccaacaagaaatcc
ttgacctatttcaggcgtgactacgatgctgatatcgaagaagtcacctttgaccaacag
gatgtgaagaagctgttctacgggagcttccacaaggtgcacgtatctgtgagccattcc
agggtcaaactctacatcgactgcaagaaaatagccgagaaggcgctcggagcttcagag
acggtctcgactgctggcttcgttatgctggggaaactgacgaggacacgaggaccacgg
agcggatcggctgcattccagctgcagtcgttgaggattgtgtgcagcagtttgtgggct
gaagaagaccgatgttgtgaggtcccagcactgagggatgaagaggtctgtcccagcttc
cttccttcctgcacctgtacgtcgggaattccaggagtcccgggacccccagggcctcca
ggcagtcctggaaggagaggaccgcagggcgaacaaggagagccgggccccaagggtgca
ccgggcccacctggacaggttggcccagaagggccaggaggacagcaggggacaccaggg
tccgaggggttagctgtacagggccccatcgggccaccaggtgttaaaggcgacaaagga
gacagtggaaacccagggattcagggtattatgggcccccagggagctccagggaaggat
ggaattcaaggagccaagggcgtccggggcctcgaaggcaccgctggaccaccgggaccg
ccaggaccgaggggtttccaaggaatagctggagcaaggggcagcccgggggagaagggc
cccccaggagaagttggcccgacggggctgcctgggccaaaaggggaaaggggagagaaa
ggtgaaccacaatccatggccaccatctatcacctggtcaaccaggcctgcgagcgtctg
atacagtcacatgttttgaagttcgattcattcatccatgaacacacaaggaaacctgct
cccatgtgggaggacaaattgaaggcaggagagcccggacccccaggtcttcctggaccc
cctggcatgaaaggagaaaggggggaagtggggatgccgggccagccaggcagagatgga
tatccgggagaacgaggttctccgggacccaagggggaaaaaggttattcggggcctagc
gtggacggcttacaaggaccgagaggtttggcaggcccggtgggggaaacaccactcggt
aagcagggacccaaaggagcttctggaaacacgggttcccctgggtttcccggagctaga
ggccagtccggagaacttgggcccgatggcggatgcatcacttctgattgctacgaggag
atcctaagagatgcagcgtcgatcccctga
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