Sphaerodactylus townsendi (Townsend's least gecko): 125434407
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Entry
125434407 CDS
T08213
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03015
mRNA surveillance pathway
stow03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125434407 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
125434407 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stow03019
]
125434407 (PABPC4)
03041 Spliceosome [BR:
stow03041
]
125434407 (PABPC4)
Messenger RNA biogenesis [BR:
stow03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125434407 (PABPC4)
mRNA cycle factors
Stress granule specific factors
125434407 (PABPC4)
Spliceosome [BR:
stow03041
]
Complex C
Other components
Complex C specific factors
125434407 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_10
RRM_occluded
RBD_RDR6
RRM_3
DUF6262
POP1_C
Motif
Other DBs
NCBI-GeneID:
125434407
NCBI-ProteinID:
XP_048355691
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All DBs
Position
LG06:complement(102403404..102423228)
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AA seq
628 aa
AA seq
DB search
MNTAASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEK
HEEANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANAIINQFQPAAGGYFMPAVPQAQNRP
TYYAPNQMTQMRPNPRWQQGGRPQGFQGMPNAMRQSGPRPSLRHLAPTGNAHRTLSAASQ
RVGVTNTTPNLAPRPPVAAQAPRAVPPYKYASSVRSPHPTVQPLQASQPAVHVQGQEPLT
ASMLAAAPPQEQKQMLGERLFPLIQAMHLSLAGKITGMLLEIDNSELLHMLESPESLRSK
VEEAVAVLQAHQAKKEAAQKVGIVAATS
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagctgctagtagttacccaatggcatcattatatgtgggtgaccttcaccct
gatgtcacggaggccatgctctacgagaagttcagccctgctggtcccgtgctgtccatc
cgtgtgtgcagagatatgatcactcgtcgctccctgggatatgcttatgtcaacttccag
cagccagcggacgcagagcgagctctggacaccatgaactttgatgtgatcaaagggaag
cccatccgcatcatgtggtctcagcgggacccttccctgaggaaatccggggtggggaat
gtcttcattaagaatctggacaaatccatagacaacaaggcactttatgacacattctca
gcttttgggaatatcctttcctgcaaggtggtgtgtgatgagaatggctctaagggctac
gcatttgtgcactttgagacacaggatgctgcggaccgggccattgagaagatgaatggc
atgctgctgaacgaccgcaaagtatttgttggcagattcaaatctcgaaaagaacgagag
gcagaattgggagccaaagccaaggaatttacaaatgtttacattaaaaactttggggat
gatatggatgatgagagactcaaggagctcttcagcaaatatggcaagaccctcagtgtg
aaagtcatgacagaccctactgggaagtccaaagggtttggctttgtgagctttgaaaag
catgaagaagctaacaaggcagtggaagaaatgaatggaaaagatatcaatgggaaaatg
gtgtttgtgggccgtgcacagaaaaaagtagaacgccaggcagaactcaaacgaaagttt
gagcagttgaagcaggaaagaatcagtcgctatcagggagttaatttgtacattaagaac
cttgatgataccattgatgacgagaaactgaggaaggagttctcaccttttggttccatc
acaagtgccaaggtgatgctggaagatggtcgaagcaaaggtttcggcttcgtctgcttt
tcctctccggaggaagccaccaaagccgtaaccgaaatgaacgggcgcattgtgggctcc
aagccgctctacgttgctttggcacagaggaaggaggagcggaaggcccacctcaccaac
cagtatatgcagcgcattgctgggatgagagctctgcctgccaatgctatcatcaatcag
ttccagccagctgcaggtggctacttcatgcctgcagtgccccaggctcagaacagaccc
acttactatgcacctaatcagatgactcagatgagacccaatccacgctggcagcaaggg
gggagacctcaaggcttccaaggaatgcccaatgccatgcgccagtctggaccacggccg
tcgttacgccatctagctccaactggtaatgcccatcggaccctttctgctgcctctcaa
agagttggtgttaccaacactactccgaacttagcacctcgacctcctgtagctgcccag
gctcccagagcagttcctccctacaaatatgcctcgagtgttcgcagtccgcacccaact
gtacaacctttgcaggcctcacagcctgctgttcacgtgcagggacaggagcccttaact
gcttctatgctggctgctgcccctccgcaggagcaaaaacagatgctgggagaacgtctg
tttcccctgatccaagctatgcacctcagccttgcaggaaagatcacaggaatgctgcta
gagattgacaactcagagctactgcacatgttggagtctccagaatccctccgctcaaag
gtggaagaggctgtggcagtgttgcaggcacaccaggccaagaaagaagctgcccagaaa
gtgggcatagttgctgctacctcttaa
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