Sphaerodactylus townsendi (Townsend's least gecko): 125434518
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Entry
125434518 CDS
T08213
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03013
Nucleocytoplasmic transport
stow03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125434518 (UPF2)
03015 mRNA surveillance pathway
125434518 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stow03019
]
125434518 (UPF2)
Messenger RNA biogenesis [BR:
stow03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125434518 (UPF2)
mRNA cycle factors
P-body specific factors
125434518 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
125434518
NCBI-ProteinID:
XP_048355946
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All DBs
Position
LG06:91868070..91921663
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AA seq
1292 aa
AA seq
DB search
MPAERKKSASMEEKETSLSNKDKEFSDRRTVNTREKPKEDVKLGMKRETLKLPDDKKKKL
EEEKRKKEDKERKKKDEEKVKSEEEQKRKEEEEKQKFEEEEKKKQEEEVKRQQEEAAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFSGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTVVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKNAADKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFSLSYQKLLANSQSLADLLD
ENMPDLPQDKPVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKCSQNKDSSKDDSRELKEVKDNKDVSAGEDLELELENLDINDDPLELECGDEAE
DLAKKLLNEQGKKQGADSTGADSSDGKQAARKQEDEEASTGSHLKLIVDAFLQQLPNCVN
RDLIDKAAMDFCMNMNTKANRRKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDL
CSMLKGDFRFHVRKKDQINIETKNKTVRFIGELAKFKMFSKSDTLHCLKMLLSDFSHHHI
EMACTLMETCGRFLFRSPESHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPA
EKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWHDPEVKDYVICCMINIWNVK
YNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYN
YRMVESAVIFRTLYSFTSFGVNPDGTPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKR
KLDCFLVYFERYVWWKKSLDVWTKDHPFPIDIDYMISDTLELLRPKMKLCNSLEESVRQV
QDLEREFLIKLGLVNDKDSKSSMAEGENLEEDEEEEEGGAEIEEQSGNESEINDPEEEEG
SENEDEEGEEEEEENTDYLTDSNKENETDEENTEVMIKGGGLKRVPCAEDEDFIQALDKM
MLENLQQRSGESVKVHQLDVAIPLHLKSQLKKGPPLSGGEGESESGDTMPFVMLTRKGNK
QQFKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPA
PANTNRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgcaagaagtcggcaagcatggaagaaaaagaaacatcactaagtaac
aaagataaagagttcagtgacaggcggacagtgaatactagagagaaacccaaagaggat
gttaagctcggcatgaagagggagacattaaaactacctgatgataaaaagaagaagcta
gaagaggagaagcggaaaaaagaagacaaggagagaaagaaaaaagatgaggaaaaagta
aaatctgaagaagagcagaaaagaaaagaggaagaggaaaagcagaaatttgaagaggaa
gagaaaaagaaacaagaggaggaagtaaagaggcaacaagaggaggcagctgctcagctg
aaagagaaagaagaggcccatcagctccaccaggaagcctgggagcgccaccaagcaaga
aaggagcttcggagcaaaaaccagaatgcaccagacaaccgccctgaagaaaacttcttt
agcaggctggattcaagtctcaagaagaacacggcctttgtcaagaagctaaaaactatc
acggagcagcagagagactccttgtcccatgattttagtggtctcaatttaagcaagtac
attgcggaagctgttgcttctatagtggaagcaaaattgaaaatctcggatgtaaactgc
gctgtgcatctttgttctctgtttcatcagcgttatgccgactttgccccgtcgcttctt
caagtctggaaaaagcattttgaagccaggaaagaagagaaaacgcccaatatcaccaag
ctaagaacggacttgcggttcattgcagaactgacggtagttgggattttcactgacaag
gaaggcttgtctttaatctatgaacaactaaaaaacattattaatgctgatcgggaatcc
cacactcatgtttctgtggtcattagcttttgccggcattgcggagatgacattgctggt
ttggtaccaaggaaagtaaaaaatgcagcagataaatttaacttgagtttccctcctagt
gaaattattagcccagaaaaacaacagcctttccaaaatctgctgaaagaatactttaca
tctttgaccaaacatctgaaaagggaccacagggaactgcaaaatattgaaagacagaac
aggcgtattctgcactctaaaggcgaactcagtgaagaccggcacaagcaatatgaagaa
ttttccttgtcgtatcagaagttgttggcaaactctcagtctttagctgatctcttggat
gaaaatatgcctgatcttccccaggataaacccgtacaggaagaacatggacctggtatt
gacatttttacgcctggaaaacctggtgaatatgacttagaggggggcatctgggaagat
gaagatgctcggaacttctatgagaatctcattgatttaaaagcatttgtaccagctatc
ctattcaaggataatgaaaaatgttcacagaataaggactccagtaaagatgactctaga
gaattgaaagaagttaaagataacaaagatgtgtctgctggtgaagatttggagctggag
ctggagaacttagatattaatgatgatccccttgagttagagtgtggggatgaagcagaa
gatcttgcgaagaagcttcttaatgagcaaggcaagaaacagggagcagatagcaccgga
gctgacagtagtgacggaaagcaagctgcaagaaagcaagaagatgaagaggccagtact
gggtcccacttgaagctcattgtagatgctttccttcagcaactcccaaactgtgtaaat
agagacctaatagacaaggcagcaatggacttctgcatgaatatgaacaccaaagccaac
agaaggaagttggttcgggctctctttattgttccacgacaaaggctggatttgctacct
ttttatgcaaggctagttgccacgctgcatccctgtatgtctgacgtagcagaggacctt
tgttccatgctgaaaggcgacttcagatttcatgtgagaaagaaggaccagatcaacatt
gaaacaaagaataaaactgtacgattcattggcgagcttgcaaagttcaaaatgttttcc
aaaagtgacactctgcattgcttaaagatgctgctgtctgatttctctcatcaccatatt
gaaatggcatgcactctcatggagacctgtggaagattcctcttcagatcaccagaatcc
catttaagaaccagtgtccttttggaacaaatgatgagaaagaagcaagcaatgcatctc
gatgcacgctatgtcacgatggtggaaaatgcctattactactgtaaccctcctccagca
gagaagacagtgaaaaagaaacggcctcctctccaggagtacattcggaaattactttac
aaggatctctccaaagtcaccactgagaaggtcctgcgacagatgcgcaaattgccctgg
catgaccctgaagtgaaagattatgttatatgttgtatgatcaacatctggaatgtgaaa
tataatagcattcactgtgtagccaaccttttagcaggtctggttctttaccaagaggat
gttggcattcatgttgtggatggtgtcctagaggatattcgactaggaatggaggttaat
cagccaaaatttaatcaacggaggatcagcagtgcgaagtttctgggtgagctgtacaat
tacagaatggtcgagtcagcagtaatatttcggactctgtactcattcacatcatttggg
gtgaaccctgatggaactcctagcccacttgatcctcctgaacatcttttccgaattaga
ctggtctgtaccatccttgacacttgcggacaatattttgacagggggtccagcaaacgg
aaactggattgctttttggtctactttgagaggtatgtttggtggaagaaaagcttggat
gtctggacaaaagaccacccatttcctattgacattgactatatgatcagtgatactcta
gaactgttgagaccaaagatgaaactctgcaactcgctggaagaatctgttagacaggtc
caagacctggaaagggaatttttaatcaaactaggccttgtgaatgacaaggactctaaa
agttcaatggcagaaggagaaaacctagaggaggatgaggaagaggaagaaggtggagca
gagatagaggaacaatctggaaacgaaagtgaaataaatgacccagaggaggaggagggc
tctgagaatgaggatgaagagggagaagaagaagaagaagagaatacagattatctcaca
gattcgaataaggagaatgaaactgatgaagagaatactgaagtgatgatcaaaggaggt
gggctgaaacgtgtgccttgtgctgaagatgaagacttcattcaagcactggacaaaatg
atgctggaaaatttgcagcaaaggagtggtgagtctgtgaaagtacatcagttagatgtg
gctattccccttcatctcaagagccaactaaagaagggaccaccactgagtggtggggaa
ggagaatcggagtctggtgacacaatgccttttgtcatgttaactcgaaaaggcaataag
cagcagttcaagatcctcaatgtgccgatgtcttcccaactggctgcaaaccactggaac
cagcaacaagctgagcaggaagagaggatgagaatgaagaagctgactctggacatcaat
gaacggcaggagcaagaggactaccaggagatgatgcagtcccttgcccagcggccagct
ccagcaaataccaaccgagaacggaggccccggtatcagcatcccaaaggagcacctaat
gctgatctaatctttaaaactggtgggaggagacgttga
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