Sphaerodactylus townsendi (Townsend's least gecko): 125435038
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Entry
125435038 CDS
T08213
Symbol
COL4A2
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow04510
Focal adhesion
stow04512
ECM-receptor interaction
stow04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125435038 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125435038 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125435038 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
stow04147
]
125435038 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
stow00536
]
125435038 (COL4A2)
Exosome [BR:
stow04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125435038 (COL4A2)
Glycosaminoglycan binding proteins [BR:
stow00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125435038 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125435038
NCBI-ProteinID:
XP_048356987
LinkDB
All DBs
Position
LG01:complement(178644991..178819451)
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AA seq
1711 aa
AA seq
DB search
MRLPAPPWRLALLLVGLAVLRSGRVQAGGKSYTGPCAGRDCSGGCECFPEKGARGQPGQL
GPQGPPGPDGVEGIPGLPGHKGDKGERGQPGISGPKGEVGQRGVTGFPGADGVPGHPGQA
GSRGKPGHDGCNGTKGDAGQQGSPGGAGFPGFFGNPGPKGQKGEPFVLTPNLAAEFRGDP
GGPGLMGFPGPQGLPGPQGIFGPLGDPGLPGPPGPPGIPGLPGNRGLGFYGEKGEKGDIG
PPGPPGLPSTGELVTTTDIITIEHKGIKGAKGIRGEPGTPGSYVYAPEKGEEGVTGFPGQ
RGLPGINGLTGADGDLGNPGLDGFSGHDGQRGMKGEPGDRGVPGRPVYARRPTLIKGARG
DPGVPGFPGPVGDRGEQGTPGIPGLPGPPPDISVRRGLPGEMGPKGFVGDPGLPAEIPGL
PGIDGQDGLPGFPGSTGPPGSSEYVVGPKGFRGFPGRDGSQGYPGPRGQKGFKGEAGDCR
CGADEGRRGPAGQPGPPGFPGPLGHPGRKGQPGDQGQHGVPGFSGAKGFPGLPGPPGLPG
PKGDSRYVTEKGARGDQGETGPPGAKGDDGLPGRDGKDGLPGLPGLPGDGIRGAVGDAGD
PGPPGPKGFPGEGGLPGIDLPGPKGYPGPPGNLGAHGSPGWQGPPGPPGTPAQLDCGQTV
QTVQVIGQNRTDLRPPGSGCPIAPKGAPGNPGVPGPRGAVGPKGISGDFGLDGLKGITGP
EGDRGPEGAAGPPGFTGPRGTPGSPGSPGAKGFPGSRGLPGLPGAPGAKGITGDILGAQP
GFPGDAGPPGFSGLLARKAFXVLPALRGSDGFPGPPGIKGQRGFSGPPGLTGAQGPPGSF
GFPGMPGPQGSRGRMGSQGLTGPPGPRGDSGDPGIPGPAGVRGLPGSKGEPGFPGIKGKA
GDVGLSGVDGMPGLPGLKGSKGSEGVRGFQGAMGLKGWPGWKGAPGESGLPGPPGSQGLI
GESGQKGDRGEHGPRGAPPKIMPSMLQEVKGEKGDEGEGGLKGYHGFKGSRGMPGFPGQT
GRPGLPGFSSFVKGQKGDTGLKGLKGLPGHPGGEGPQGIPGFPGPTGRRGEKGMPGTIGS
FGEKGQSGDVGGRGDTIDLPGRTGPKGEPGTSGFPGVRGPPGEKGESGNPGFSGIEGLKG
TPGEPGSRGQEGFPGQTGERGSSGDPGRPGSSGEKGSSGQPGLPGGKGLPGSRGIPGLDG
LTGPKGLLGSPGLDAYGPPGFRGTWGDKGTAGEPSSVEGSRGSPGPKGERGDPGQRGTAG
DPGPSGIPGLPGISNISGVPGDMGSPGFDGVRGYPGPSGLPGIPAPPGPKGEEGPGGLFG
EDGPKGLRGDPGQDGRTGIPGFPGPKGRKGDQGVMGFVGFVGSTGDLGPRGPKGDRGPTG
FQGPPGSPGLVPVPPKLQALQGAQGPQGSRGAPGSPGEMGPQGPPGDPGFRGPSGKPGVG
GRGGIPASPGFRGDQGRTGLQGPLGLEGSPGDPGTPGLPGMPGRSVNIGYLLVKHSQSEQ
EPMCPVGMNKLWSGYSLLYFEGQDKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASR
NDKSYWLSTTAPLPMMPVREDEIQPYISRCSVCEAPAVAIAIHSQDVSIPHCPEGWRSLW
IGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGAQGTCHYFANKYSFWLTTID
DQFQHSPSSDTLKAGLIRTHISRCQVCMKNL
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgcccgcgcccccctggcggctggcactcctcctggtgggactggccgtgctc
cggagcgggcgagtgcaagcaggaggaaaatcctatactggaccatgtgctggaagagat
tgcagtggaggttgtgaatgtttcccggaaaaaggagctcgtggtcaaccaggacagctt
gggccacaggggcctcccggacccgatggagtggaaggcatcccaggactgccagggcac
aaaggtgacaaaggagaaagaggccaaccaggaatatctggacccaagggagaagtggga
caaagaggagtcactggatttccgggtgcagatggtgttcctggccatccgggtcaagca
ggatctcgggggaaacccggccatgacggttgcaatgggaccaagggagatgcgggccag
cagggaagccccgggggtgcaggctttccgggtttctttggaaaccctggacccaaaggt
caaaaaggggaaccgtttgtgctgactcccaacttagccgcagagttcaggggggatcct
ggtggtccaggtctgatgggctttccaggccctcaaggtcttcctggtcctcagggtatc
tttggacctctcggagacccgggattacccgggcctcctggaccaccaggaattccagga
cttccgggcaacagaggtcttggcttttacggagaaaaaggtgaaaagggtgatatcggt
cccccagggccgcctggtcttccatcaacaggagaactggtcaccacaactgatataatc
acaattgaacacaagggaattaaaggagcaaaaggaataaggggtgaacctggaactcca
ggctcctatgtatatgcacctgaaaagggtgaagaaggcgtcacaggttttccaggacaa
aggggtttgccgggcatcaatggcctaacaggagccgatggagatttgggcaacccagga
ctggatggtttctctggccatgatggtcaaagaggaatgaagggagaaccaggagatcga
ggagttccaggccggccagtttatgcacgccgtcccactctaataaaaggtgcaagaggt
gacccgggagtccctggttttcctggccctgtgggggacaggggtgaacaaggcactcct
ggaattcctggtcttccaggaccacccccagatatctctgtaagaagaggattgcctgga
gaaatggggcccaaaggttttgttggcgatccagggcttccagctgaaataccaggtctc
ccagggatagatggtcaggatggactccctgggtttcctggttcaactggccctccaggt
tcttcagagtatgttgttggaccaaaggggtttcgagggtttcctggccgtgacggcagc
caagggtacccagggccgcgcggacagaaaggctttaaaggtgaggcaggggattgtcga
tgtggagccgatgaaggaagaaggggcccagccgggcaaccgggccccccaggttttcca
ggcccattgggacatcctggtagaaagggacaacctggcgatcaaggccagcatggtgtc
cctggattttctggtgctaaaggttttcctggacttcctggacctcccggactgccaggg
ccgaaaggggattcccgatacgtgacagaaaaaggtgccagaggggaccaaggagagact
gggcctcctggagcgaaaggagacgatggtttaccaggcagagatgggaaagatggtttg
ccagggctgcctggtcttcctggtgatggtataagaggtgctgtaggggacgctggcgat
ccgggacctcctggccctaagggctttccaggtgaagggggtctgcctgggatcgatttg
ccaggccctaaaggatatccaggtcctccaggtaacctcggggcacatgggagtcctggt
tggcaaggtcctcccggtcccccagggacccccgctcaattagactgtggacaaactgtg
cagactgtgcaagtcattggtcaaaacaggactgatctgcggccaccaggttctggctgc
cctatagccccaaaaggagctccgggaaatccaggggtaccaggaccaaggggtgctgtt
ggtccaaaagggatttcaggagactttggtctggatgggctcaaggggataactggccct
gaaggggaccgaggccccgaaggtgcagcgggccccccaggatttactggacccagagga
actccaggttcaccaggatcgcctggggccaaaggttttccaggtagtcgtggtttacca
ggcttgcccggtgcaccgggggcaaaaggaattacaggagatatcctaggagcacagcca
ggcttcccaggagatgctggaccgcctggattttcaggacttctggcacgcaaggctttc
tgagttttaccagcacttagaggcagcgatgggtttccaggcccacctgggatcaaaggg
cagcgagggttttcaggtcctcctggcctgacaggtgcgcagggaccaccaggatcattt
ggattccctggaatgccaggcccacaaggatccagaggaagaatgggttcacaggggctt
acgggcccacctggtcctcgaggggattcaggagacccaggaataccaggtcctgcaggt
gtaagaggtctgcctggtagcaaaggtgaaccaggtttccccggcatcaaaggcaaagct
ggtgatgttggcctttctggagtagatgggatgcctggccttccgggtctgaaagggagc
aaaggctcagaaggtgttagagggttccaaggagccatgggccttaaaggatggccaggg
tggaaaggagccccaggagagagcggcctacctgggccaccaggatcacaaggcctgatt
ggggaatcgggacaaaaaggtgaccgtggagaacatggccctcgaggagcaccccccaaa
attatgcccagcatgctccaggaagtgaaaggtgaaaagggagatgaaggagaaggaggg
ctgaagggataccatggcttcaaaggcagtagagggatgcctggcttccctggccagacc
ggaagaccgggtttacctggattctcaagttttgttaaaggccagaaaggagacactggg
ctcaaaggactcaaaggtcttccaggacatcctggtggcgaaggacctcagggtattcct
ggcttccccgggcccaccggacgccggggagaaaagggaatgccagggacgatcgggtca
tttggcgagaagggacagtcgggggatgttggtggtaggggagatactatagacttacca
ggaagaacaggtcctaaaggagagcccggtaccagtggattcccaggtgtgaggggcccc
ccgggagaaaaaggggaaagtggaaatccaggtttttcaggcatcgaaggactcaagggc
accccaggagaacctggctcaagaggacaagaaggattcccaggacagactggggaacga
gggtcatcaggagatccaggaagaccgggatcatcaggtgaaaagggaagttctggtcag
cctgggctcccaggagggaaaggtttacctggctcaagaggaattcctggattggatggg
ttgaccggtccaaagggactactgggatcaccaggtcttgatgcttacggcccaccaggt
ttccgaggtacttggggtgacaaaggtacagcgggagagccgagctccgttgaaggcagt
agaggatctcctggtccaaaaggagagagaggcgacccagggcaacgaggcacggctgga
gatcccgggccttccgggattccaggtcttcccggaatttccaatatatctggagtccct
ggggacatgggatccccaggttttgatggcgtacgaggataccctgggccttcaggacta
cctggaatacctgctccacctggacccaaaggagaagagggacctggaggtttgtttgga
gaagatggtccaaaaggccttcgaggagatccaggtcaagatggaagaactggaataccg
ggattccctgggccaaaagggagaaaaggtgatcaaggagtcatgggatttgtcggcttt
gtgggaagtacaggtgaccttggccccaggggacccaaaggagaccgaggacccacagga
tttcaggggcctccaggttcccctggccttgttcctgtcccccctaaactgcaagctctg
cagggggcacagggccctcaagggagcagaggggctccaggaagtcctggtgaaatgggt
ccacaaggtccgccgggagatccaggatttagaggaccatcaggcaaaccaggagtggga
ggaagaggaggaataccagcgtctccgggctttagaggcgatcaaggaagaacgggactg
cagggtcctctgggcctcgaaggttcaccaggtgacccaggtactcctgggctgccaggt
atgccaggccgcagtgttaatataggatatcttctggtgaaacacagccagtcagagcaa
gaacccatgtgtccagtgggcatgaataaactgtggagtggctacagtttgctgtatttt
gaaggacaagataaagcacataatcaggacctgggtctagctgggtcatgtttggctcgg
ttcagcacaatgccctttctttactgcaatcccggagacgtctgctactacgcaagccgc
aacgacaaatcctactggctgtctacaacggctcctcttccaatgatgcctgtgagagaa
gatgaaatccagccttacatcagccgttgttctgtctgtgaggctccagccgtcgccatc
gctatccacagccaagacgtttctatcccacactgtccggaaggatggcgcagtttatgg
atcggatattcgttcctcatgcacactgctgccggcgctgaaggagggggccagtcgctc
gtctccccggggagctgcctggaggacttccgagcgaccccattcatcgaatgcaacggg
gctcaggggacttgccactactttgccaacaaatacagcttctggctcaccaccatcgac
gaccaattccaacactcgccctcctcagatacgctcaaggcaggactcatccgaacacac
atcagcagatgccaagtctgtatgaaaaacctttaa
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integrated database retrieval system
