Sphaerodactylus townsendi (Townsend's least gecko): 125435038
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Entry
125435038 CDS
T08213
Symbol
COL4A2
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow04382
Cornified envelope formation
stow04510
Focal adhesion
stow04512
ECM-receptor interaction
stow04518
Integrin signaling
stow04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125435038 (COL4A2)
04518 Integrin signaling
125435038 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125435038 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125435038 (COL4A2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
125435038 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
stow04147
]
125435038 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
stow00536
]
125435038 (COL4A2)
Exosome [BR:
stow04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125435038 (COL4A2)
Glycosaminoglycan binding proteins [BR:
stow00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125435038 (COL4A2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125435038
NCBI-ProteinID:
XP_048356987
LinkDB
All DBs
Position
LG01:complement(178644991..178819451)
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AA seq
1711 aa
AA seq
DB search
MRLPAPPWRLALLLVGLAVLRSGRVQAGGKSYTGPCAGRDCSGGCECFPEKGARGQPGQL
GPQGPPGPDGVEGIPGLPGHKGDKGERGQPGISGPKGEVGQRGVTGFPGADGVPGHPGQA
GSRGKPGHDGCNGTKGDAGQQGSPGGAGFPGFFGNPGPKGQKGEPFVLTPNLAAEFRGDP
GGPGLMGFPGPQGLPGPQGIFGPLGDPGLPGPPGPPGIPGLPGNRGLGFYGEKGEKGDIG
PPGPPGLPSTGELVTTTDIITIEHKGIKGAKGIRGEPGTPGSYVYAPEKGEEGVTGFPGQ
RGLPGINGLTGADGDLGNPGLDGFSGHDGQRGMKGEPGDRGVPGRPVYARRPTLIKGARG
DPGVPGFPGPVGDRGEQGTPGIPGLPGPPPDISVRRGLPGEMGPKGFVGDPGLPAEIPGL
PGIDGQDGLPGFPGSTGPPGSSEYVVGPKGFRGFPGRDGSQGYPGPRGQKGFKGEAGDCR
CGADEGRRGPAGQPGPPGFPGPLGHPGRKGQPGDQGQHGVPGFSGAKGFPGLPGPPGLPG
PKGDSRYVTEKGARGDQGETGPPGAKGDDGLPGRDGKDGLPGLPGLPGDGIRGAVGDAGD
PGPPGPKGFPGEGGLPGIDLPGPKGYPGPPGNLGAHGSPGWQGPPGPPGTPAQLDCGQTV
QTVQVIGQNRTDLRPPGSGCPIAPKGAPGNPGVPGPRGAVGPKGISGDFGLDGLKGITGP
EGDRGPEGAAGPPGFTGPRGTPGSPGSPGAKGFPGSRGLPGLPGAPGAKGITGDILGAQP
GFPGDAGPPGFSGLLARKAFXVLPALRGSDGFPGPPGIKGQRGFSGPPGLTGAQGPPGSF
GFPGMPGPQGSRGRMGSQGLTGPPGPRGDSGDPGIPGPAGVRGLPGSKGEPGFPGIKGKA
GDVGLSGVDGMPGLPGLKGSKGSEGVRGFQGAMGLKGWPGWKGAPGESGLPGPPGSQGLI
GESGQKGDRGEHGPRGAPPKIMPSMLQEVKGEKGDEGEGGLKGYHGFKGSRGMPGFPGQT
GRPGLPGFSSFVKGQKGDTGLKGLKGLPGHPGGEGPQGIPGFPGPTGRRGEKGMPGTIGS
FGEKGQSGDVGGRGDTIDLPGRTGPKGEPGTSGFPGVRGPPGEKGESGNPGFSGIEGLKG
TPGEPGSRGQEGFPGQTGERGSSGDPGRPGSSGEKGSSGQPGLPGGKGLPGSRGIPGLDG
LTGPKGLLGSPGLDAYGPPGFRGTWGDKGTAGEPSSVEGSRGSPGPKGERGDPGQRGTAG
DPGPSGIPGLPGISNISGVPGDMGSPGFDGVRGYPGPSGLPGIPAPPGPKGEEGPGGLFG
EDGPKGLRGDPGQDGRTGIPGFPGPKGRKGDQGVMGFVGFVGSTGDLGPRGPKGDRGPTG
FQGPPGSPGLVPVPPKLQALQGAQGPQGSRGAPGSPGEMGPQGPPGDPGFRGPSGKPGVG
GRGGIPASPGFRGDQGRTGLQGPLGLEGSPGDPGTPGLPGMPGRSVNIGYLLVKHSQSEQ
EPMCPVGMNKLWSGYSLLYFEGQDKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASR
NDKSYWLSTTAPLPMMPVREDEIQPYISRCSVCEAPAVAIAIHSQDVSIPHCPEGWRSLW
IGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGAQGTCHYFANKYSFWLTTID
DQFQHSPSSDTLKAGLIRTHISRCQVCMKNL
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgcccgcgcccccctggcggctggcactcctcctggtgggactggccgtgctc
cggagcgggcgagtgcaagcaggaggaaaatcctatactggaccatgtgctggaagagat
tgcagtggaggttgtgaatgtttcccggaaaaaggagctcgtggtcaaccaggacagctt
gggccacaggggcctcccggacccgatggagtggaaggcatcccaggactgccagggcac
aaaggtgacaaaggagaaagaggccaaccaggaatatctggacccaagggagaagtggga
caaagaggagtcactggatttccgggtgcagatggtgttcctggccatccgggtcaagca
ggatctcgggggaaacccggccatgacggttgcaatgggaccaagggagatgcgggccag
cagggaagccccgggggtgcaggctttccgggtttctttggaaaccctggacccaaaggt
caaaaaggggaaccgtttgtgctgactcccaacttagccgcagagttcaggggggatcct
ggtggtccaggtctgatgggctttccaggccctcaaggtcttcctggtcctcagggtatc
tttggacctctcggagacccgggattacccgggcctcctggaccaccaggaattccagga
cttccgggcaacagaggtcttggcttttacggagaaaaaggtgaaaagggtgatatcggt
cccccagggccgcctggtcttccatcaacaggagaactggtcaccacaactgatataatc
acaattgaacacaagggaattaaaggagcaaaaggaataaggggtgaacctggaactcca
ggctcctatgtatatgcacctgaaaagggtgaagaaggcgtcacaggttttccaggacaa
aggggtttgccgggcatcaatggcctaacaggagccgatggagatttgggcaacccagga
ctggatggtttctctggccatgatggtcaaagaggaatgaagggagaaccaggagatcga
ggagttccaggccggccagtttatgcacgccgtcccactctaataaaaggtgcaagaggt
gacccgggagtccctggttttcctggccctgtgggggacaggggtgaacaaggcactcct
ggaattcctggtcttccaggaccacccccagatatctctgtaagaagaggattgcctgga
gaaatggggcccaaaggttttgttggcgatccagggcttccagctgaaataccaggtctc
ccagggatagatggtcaggatggactccctgggtttcctggttcaactggccctccaggt
tcttcagagtatgttgttggaccaaaggggtttcgagggtttcctggccgtgacggcagc
caagggtacccagggccgcgcggacagaaaggctttaaaggtgaggcaggggattgtcga
tgtggagccgatgaaggaagaaggggcccagccgggcaaccgggccccccaggttttcca
ggcccattgggacatcctggtagaaagggacaacctggcgatcaaggccagcatggtgtc
cctggattttctggtgctaaaggttttcctggacttcctggacctcccggactgccaggg
ccgaaaggggattcccgatacgtgacagaaaaaggtgccagaggggaccaaggagagact
gggcctcctggagcgaaaggagacgatggtttaccaggcagagatgggaaagatggtttg
ccagggctgcctggtcttcctggtgatggtataagaggtgctgtaggggacgctggcgat
ccgggacctcctggccctaagggctttccaggtgaagggggtctgcctgggatcgatttg
ccaggccctaaaggatatccaggtcctccaggtaacctcggggcacatgggagtcctggt
tggcaaggtcctcccggtcccccagggacccccgctcaattagactgtggacaaactgtg
cagactgtgcaagtcattggtcaaaacaggactgatctgcggccaccaggttctggctgc
cctatagccccaaaaggagctccgggaaatccaggggtaccaggaccaaggggtgctgtt
ggtccaaaagggatttcaggagactttggtctggatgggctcaaggggataactggccct
gaaggggaccgaggccccgaaggtgcagcgggccccccaggatttactggacccagagga
actccaggttcaccaggatcgcctggggccaaaggttttccaggtagtcgtggtttacca
ggcttgcccggtgcaccgggggcaaaaggaattacaggagatatcctaggagcacagcca
ggcttcccaggagatgctggaccgcctggattttcaggacttctggcacgcaaggctttc
tgagttttaccagcacttagaggcagcgatgggtttccaggcccacctgggatcaaaggg
cagcgagggttttcaggtcctcctggcctgacaggtgcgcagggaccaccaggatcattt
ggattccctggaatgccaggcccacaaggatccagaggaagaatgggttcacaggggctt
acgggcccacctggtcctcgaggggattcaggagacccaggaataccaggtcctgcaggt
gtaagaggtctgcctggtagcaaaggtgaaccaggtttccccggcatcaaaggcaaagct
ggtgatgttggcctttctggagtagatgggatgcctggccttccgggtctgaaagggagc
aaaggctcagaaggtgttagagggttccaaggagccatgggccttaaaggatggccaggg
tggaaaggagccccaggagagagcggcctacctgggccaccaggatcacaaggcctgatt
ggggaatcgggacaaaaaggtgaccgtggagaacatggccctcgaggagcaccccccaaa
attatgcccagcatgctccaggaagtgaaaggtgaaaagggagatgaaggagaaggaggg
ctgaagggataccatggcttcaaaggcagtagagggatgcctggcttccctggccagacc
ggaagaccgggtttacctggattctcaagttttgttaaaggccagaaaggagacactggg
ctcaaaggactcaaaggtcttccaggacatcctggtggcgaaggacctcagggtattcct
ggcttccccgggcccaccggacgccggggagaaaagggaatgccagggacgatcgggtca
tttggcgagaagggacagtcgggggatgttggtggtaggggagatactatagacttacca
ggaagaacaggtcctaaaggagagcccggtaccagtggattcccaggtgtgaggggcccc
ccgggagaaaaaggggaaagtggaaatccaggtttttcaggcatcgaaggactcaagggc
accccaggagaacctggctcaagaggacaagaaggattcccaggacagactggggaacga
gggtcatcaggagatccaggaagaccgggatcatcaggtgaaaagggaagttctggtcag
cctgggctcccaggagggaaaggtttacctggctcaagaggaattcctggattggatggg
ttgaccggtccaaagggactactgggatcaccaggtcttgatgcttacggcccaccaggt
ttccgaggtacttggggtgacaaaggtacagcgggagagccgagctccgttgaaggcagt
agaggatctcctggtccaaaaggagagagaggcgacccagggcaacgaggcacggctgga
gatcccgggccttccgggattccaggtcttcccggaatttccaatatatctggagtccct
ggggacatgggatccccaggttttgatggcgtacgaggataccctgggccttcaggacta
cctggaatacctgctccacctggacccaaaggagaagagggacctggaggtttgtttgga
gaagatggtccaaaaggccttcgaggagatccaggtcaagatggaagaactggaataccg
ggattccctgggccaaaagggagaaaaggtgatcaaggagtcatgggatttgtcggcttt
gtgggaagtacaggtgaccttggccccaggggacccaaaggagaccgaggacccacagga
tttcaggggcctccaggttcccctggccttgttcctgtcccccctaaactgcaagctctg
cagggggcacagggccctcaagggagcagaggggctccaggaagtcctggtgaaatgggt
ccacaaggtccgccgggagatccaggatttagaggaccatcaggcaaaccaggagtggga
ggaagaggaggaataccagcgtctccgggctttagaggcgatcaaggaagaacgggactg
cagggtcctctgggcctcgaaggttcaccaggtgacccaggtactcctgggctgccaggt
atgccaggccgcagtgttaatataggatatcttctggtgaaacacagccagtcagagcaa
gaacccatgtgtccagtgggcatgaataaactgtggagtggctacagtttgctgtatttt
gaaggacaagataaagcacataatcaggacctgggtctagctgggtcatgtttggctcgg
ttcagcacaatgccctttctttactgcaatcccggagacgtctgctactacgcaagccgc
aacgacaaatcctactggctgtctacaacggctcctcttccaatgatgcctgtgagagaa
gatgaaatccagccttacatcagccgttgttctgtctgtgaggctccagccgtcgccatc
gctatccacagccaagacgtttctatcccacactgtccggaaggatggcgcagtttatgg
atcggatattcgttcctcatgcacactgctgccggcgctgaaggagggggccagtcgctc
gtctccccggggagctgcctggaggacttccgagcgaccccattcatcgaatgcaacggg
gctcaggggacttgccactactttgccaacaaatacagcttctggctcaccaccatcgac
gaccaattccaacactcgccctcctcagatacgctcaaggcaggactcatccgaacacac
atcagcagatgccaagtctgtatgaaaaacctttaa
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integrated database retrieval system
