KEGG   Sphaerodactylus townsendi (Townsend's least gecko): 125435045
Entry
125435045         CDS       T08213                                 
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
stow  Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow04382  Cornified envelope formation
stow04510  Focal adhesion
stow04512  ECM-receptor interaction
stow04518  Integrin signaling
stow04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:stow00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    125435045 (COL4A1)
   04518 Integrin signaling
    125435045 (COL4A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    125435045 (COL4A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    125435045 (COL4A1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    125435045 (COL4A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:stow04147]
    125435045 (COL4A1)
   00536 Glycosaminoglycan binding proteins [BR:stow00536]
    125435045 (COL4A1)
Exosome [BR:stow04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   125435045 (COL4A1)
Glycosaminoglycan binding proteins [BR:stow00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   125435045 (COL4A1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 125435045
NCBI-ProteinID: XP_048357001
LinkDB
Position
LG01:178819474..179013283
AA seq 1682 aa
MGTLGEGRGRWRAWRAAGLLLAALLFSPSAEAAAACSSCGKCDCSGVKGQKGERGLPGLQ
GLVGFPGVQGPEGHTGPPGQKGDAGEPGLPGTKGTRGPPGPAGYPGNPGLPGIPGGDGPQ
GPPGIPGCNGTKGERGPLGPPGQPGLAGKLGPPGIPGIKGDPGEIIGQLPGGILKGEKGF
QGQPGLPGVAGPPGHQGPSGPPGPEGRPGPPGPPGIPGEKGHMGLSFQGPKGEKGERGVM
GPPGPQGGTPQQQEKGTIAIQGEKGDPGDKGEPGFPGSPGLSIKGEKGEPGKPGPRGRPG
KDGEDGEKGRTGPSGPPGFPGLPGAEGLKGDKGVAGLPGLPGTVIGPDEVELFGEKGDPG
TPGFPGQKGEQGYKGFPGLPGIPGVPGPPSPGVIGAPGIPGDRGEKGDQGHPGLSLFGQK
GRDGLPGPPGLPGPPGPPGIIDEILGCQPGPPGDPGPPGSAGQHGFSGERGEKGERGEGC
ISCDVPILPGPPGPQGLPGEPGFPGSPGAKGDRGAPGFDGVPGVAGSAGVPGLSGSPGAK
GEPGDVFFDSDLKGDKGNPGFPGTPGISGRDGRPGRDGVPGSPGPKGASGTLGLKGDRGS
PGTSGFPGPRGERGFPGSPGVGLPGAPGSKGETGLSGIPGTPGLPGPKGEAGQAVFLHGP
PGPAGVPGSPGLPGIQGDKGVAGIPGRPGQPGEKGTRGPAGIGFPGAPGPQGFPGQPGPP
GLDGAKGDTGSSGVPGAPGFQGPKGDAGVGLPGQKGFPGPKGRDGLPGPKGDQGLPGLLG
EKGLPGVPGQPGSQGDPGSSGLPGLPGSPGAPGIGPPGPPGPLGQSGPPGPIGSSGIKGE
KGYIGVPGQDMPGPKGDKGSQGLPGLPGLQGLPGVPGPQGKEGQPGFPGIKGEMGVMGTP
GIQGPAGPIGSSGLPGEKGQSGFPGVPGLRGGPGFKGEKGETGLPGEPGKMDNVDMESMK
GQKGDQGDRGLQGAIGEKGIQGDPGTTGVPGKDGDPGSPGQPGSKGEVGSPGFPGESGTP
GLKGAMGEMGLPGHSGEKGVPGVLGDPGIPGFPGQKGIKGEKGEAGLPGIGIPGTPGEKG
EQGRSGVPGLPGERGEKGLVGLPGIPGFPGSKGQSGLPGAPGVPGSPGERGEKGLPGLSG
FPGLKGQTGDPGRQGLPGSPGEKGQAGYDGIPGSPGNKGDPGVPGRGLPGLPGEKGEKGI
KGDVGFPGAPGSSGIPGPKGDPGFVGPQGPQGQPGFPGLPGIVTEGPKGDRGPQGQPGIP
GLPGPQGSPGVPGLSGTKGEQGSPGWPGPPGRIGAKGDPGSQGLPGNAGTPGAGGSKGDM
GPPGIPGPQGPKGTPGFVGLKGEQGDQGTPGAKGFPGPPGPPGPAQLLKGEPGLPGLNGP
AGPKGFSGLPGPKGQQGVTGPVGVPGPPGVPGFDGTPGQKGETGPSGPPGPRGFPGPSGP
EGVPGPMGQPGAPSVAHGFLVTRHSQTTEEPQCPPGTRVMYFGYSLLYVQGNERAHGQDL
GTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPVTGDSIQPFISR
CAVCEAPAMVMAVHSQTVQIPPCPDGWRSLWIGYSFVMHTSAGAEGSGQALASPGSCLEE
FRSAPFIECHGKGTCNYYANAYSFWLATIERNEMFKKPTPSTLKAGELRSNVSRCQVCMR
RT
NT seq 5049 nt   +upstreamnt  +downstreamnt
atgggcacccttggcgagggtcgcggccggtggcgcgcttggagggccgcggggctcctg
ctggctgcgctcctgttcagcccatcggcggaggcggccgcggcttgttccagctgtgga
aaatgtgattgcagtggagtaaaggggcagaaaggtgaaagaggcttaccaggtttacaa
ggtttggttgggtttcctggagtacaaggacctgaagggcatacagggccccccggacag
aagggtgacgctggagaaccaggattaccagggacaaaaggaacaagagggccaccaggt
ccggcgggctatccaggaaaccctggcctccctggaatccctggaggagacgggccacag
ggtcctcctggtatcccaggatgcaatgggacaaagggtgaaagaggtcctttgggtccc
ccaggtcaacctggactggctggaaaactggggcctccaggaattccaggaataaaggga
gacccaggagaaattattgggcaattacccggtggtatactaaaaggtgaaaaaggattt
caaggccaacctggattgccgggagtagctggacccccaggacatcaaggccccagtgga
ccccccggacccgaaggaagaccaggtcctcctgggccacctggcataccaggggagaag
ggccatatgggcttaagtttccaaggacccaaaggtgaaaagggtgaacggggagtcatg
ggccctccaggaccccaaggaggtacacctcagcagcaagaaaaagggaccatagccata
caaggagagaaaggtgatcctggtgacaagggagagccgggcttcccaggatcgccaggc
ctaagcatcaaaggagagaaaggagaacctgggaaacccggtccaaggggaaggcctggg
aaggacggagaggatggagaaaagggaagaacaggaccgagtggcccgcctggatttcca
ggattacctggtgcagagggcctgaagggagataagggtgtagctggtcttccgggtctt
ccaggaactgttattggtccagatgaagtggaactgtttggggagaagggagatccaggc
actccgggatttccaggtcaaaaaggagaacaaggttacaaaggttttccagggctccca
ggtattcctggtgttccaggacctcccagcccaggggtaataggggctcctgggattcct
ggcgacagaggagaaaagggggaccagggccatcccggactttcactgtttggacaaaaa
ggaagagatggactcccagggcctcctggtctgccagggcctccagggccacccggcatc
atagatgaaattcttggatgtcaacctggcccccctggtgaccctggtcctccgggctct
gctggtcagcacggtttctcaggagaaaggggagagaaaggtgaaagaggcgaaggttgt
atctcctgtgatgtaccaatccttcctggaccaccgggtccccaaggactcccaggggaa
ccaggctttccaggatcgccaggagctaaaggggaccggggtgctcctggatttgatggc
gtacctggagtggcaggttctgctggagtacctggattatctggaagcccaggagctaaa
ggagaacccggagatgttttctttgactctgatttgaagggtgacaaaggaaaccctggt
ttccctggaactccaggcatttctggccgcgatggaagacccgggcgagatggggtgcca
ggctctccaggccctaaaggtgcatcgggaacacttggcttaaaaggcgaccgtggttct
ccaggaacaagtgggtttccaggcccccgtggagagaggggcttccctggtagtcccgga
gtggggcttccaggggcacctggcagtaaaggagaaacgggtctttctgggatccctggc
acacctggacttccagggcctaaaggtgaagctggacaggccgttttcttgcacggtcca
ccagggccagcgggtgttcccgggtctcctggactaccaggcatccaaggtgacaaggga
gttgctggaatcccaggaagacctggccaaccaggtgaaaaaggcacaagaggcccggca
ggaataggctttcctggtgctcctggccctcaaggttttccaggacagccgggcccacct
ggtctagatggtgcaaagggtgatactggttccagtggggtacctggtgcaccaggtttc
caaggccctaaaggtgatgctggagtaggtctcccaggacagaaaggatttcctggccca
aaaggacgagatgggcttcctggaccaaaaggggatcaagggctacctggtttgctagga
gaaaaaggactcccaggtgtgcccgggcagccaggttctcaaggtgaccccggttcctcc
ggattaccaggtctacctggatctcctggtgcgccaggaataggtccacctggccctcca
ggtccattaggacaaagtggacctccgggaccaattggatcttcaggaataaaaggagag
aaaggctacattggtgtccctggacaagatatgccagggccaaaaggagataaaggtagc
caaggattacctggtcttccaggtttgcaaggactcccaggtgtacctggcccacaagga
aaagaggggcagccgggttttccaggaatcaaaggagaaatgggagttatgggaacccct
ggcatccagggtcctgctggccctataggatcttctggacttcccggtgaaaaaggacaa
tctggttttcctggagtgcccggactcagaggtggccctggattcaagggtgaaaaaggt
gaaactggtctgccgggagagccaggaaaaatggataatgtcgacatggagagcatgaaa
ggacagaagggagaccaaggggacagaggtctgcagggagcaatcggagagaaggggatt
caaggggatcctggcacaacaggtgtgccagggaaagatggcgatcctggttcacctggc
caaccagggagcaaaggggaggttggctctccaggattccccggcgaatcaggcactccg
ggactgaagggagcaatgggagaaatgggcctgccaggacactcgggagaaaagggggtg
ccaggtgttctgggtgatccgggcataccggggttcccaggacagaaaggcatcaaaggg
gagaaaggagaggctggacttcccggaatcggcatccctgggacacctggtgaaaaggga
gaacaaggaaggtcaggtgttccaggcctacctggggagagaggtgaaaaaggtcttgta
ggacttccaggtattcctggttttccaggttccaaagggcagtcaggtcttccaggggct
ccaggagttccaggatcaccaggagaaaggggtgaaaaggggttgcccggcctgtctggt
tttcctggcttaaaaggacaaacaggtgaccctgggcgccagggccttcctggtagccct
ggagagaaaggacaggctggctatgacggaattccaggctcccctggaaacaagggtgac
ccaggtgttccaggcagaggacttcctggtctcccaggggaaaagggcgagaaaggaata
aaaggagacgtgggcttcccaggagctccaggaagttcagggattcctggtccaaaaggg
gatccgggatttgtgggtccacagggtccccaaggccaaccgggttttccaggattgccg
ggcattgtcacagaagggccaaagggagaccgggggcctcaaggtcagccagggattcca
gggctacctggaccacaaggatctccaggagttcctgggctgtcagggacaaaaggagaa
caagggagcccaggttggccggggccacctggaaggataggagccaaaggtgatccagga
tcccaaggactccctggaaatgctggcactcctggagctggaggttcgaaaggtgacatg
ggaccccctggaattccaggccctcaaggtccaaaaggtactccaggcttcgttggactc
aaaggcgaacaaggcgatcaagggactcctggtgctaaaggttttccagggccacctggt
cctccaggtcctgctcagcttctgaaaggagaaccaggtttaccaggtcttaatggccca
gctgggcccaaaggattttctggtcttcccggcccaaaagggcaacaaggtgtaacaggg
cctgtgggggtacctggtccccctggtgtcccgggatttgatggcacacctggtcagaaa
ggagaaacgggtccttctggccctccaggccccagaggttttcctggcccctctggccca
gaaggcgtgccagggccaatgggtcaaccgggcgctccctctgtagctcacggcttcctt
gtgactcggcacagtcagacgacggaagagccccagtgtccacctgggacgagagtcatg
tactttgggtattccttgctttatgtgcaagggaacgagcgtgcacacggccaggacttg
ggcacggctggcagctgtctgcgtaaattcagcacgatgcctttcctgttctgcaatatt
aacaacgtgtgcaattttgcctcccggaatgattactcctactggctctctaccccggaa
ccgatgccaatgagtatggctcctgtgacgggggacagcatccagcctttcatcagcaga
tgtgctgtgtgcgaagctccagcaatggtgatggcagtccacagccagacggttcaaatc
ccgccctgtccagatggctggaggtcactctggatcggctactcatttgtgatgcataca
agtgctggggccgagggctcagggcaagccctggcgtctcctggctcatgtttggaagag
ttccgcagtgcgccattcattgaatgccatggcaagggcacctgcaactattatgcaaat
gcttacagtttctggcttgccacgattgagaggaatgaaatgttcaaaaaaccaactcct
tccacactgaaagcaggggagctccgctccaatgtcagccgctgccaagtttgtatgagg
agaacataa

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