KEGG   Sphaerodactylus townsendi (Townsend's least gecko): 125435045
Entry
125435045         CDS       T08213                                 
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
stow  Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow04510  Focal adhesion
stow04512  ECM-receptor interaction
stow04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:stow00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    125435045 (COL4A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    125435045 (COL4A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    125435045 (COL4A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:stow04147]
    125435045 (COL4A1)
   00536 Glycosaminoglycan binding proteins [BR:stow00536]
    125435045 (COL4A1)
Exosome [BR:stow04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   125435045 (COL4A1)
Glycosaminoglycan binding proteins [BR:stow00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   125435045 (COL4A1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 125435045
NCBI-ProteinID: XP_048357001
LinkDB
Position
LG01:178819474..179013283
AA seq 1682 aa
MGTLGEGRGRWRAWRAAGLLLAALLFSPSAEAAAACSSCGKCDCSGVKGQKGERGLPGLQ
GLVGFPGVQGPEGHTGPPGQKGDAGEPGLPGTKGTRGPPGPAGYPGNPGLPGIPGGDGPQ
GPPGIPGCNGTKGERGPLGPPGQPGLAGKLGPPGIPGIKGDPGEIIGQLPGGILKGEKGF
QGQPGLPGVAGPPGHQGPSGPPGPEGRPGPPGPPGIPGEKGHMGLSFQGPKGEKGERGVM
GPPGPQGGTPQQQEKGTIAIQGEKGDPGDKGEPGFPGSPGLSIKGEKGEPGKPGPRGRPG
KDGEDGEKGRTGPSGPPGFPGLPGAEGLKGDKGVAGLPGLPGTVIGPDEVELFGEKGDPG
TPGFPGQKGEQGYKGFPGLPGIPGVPGPPSPGVIGAPGIPGDRGEKGDQGHPGLSLFGQK
GRDGLPGPPGLPGPPGPPGIIDEILGCQPGPPGDPGPPGSAGQHGFSGERGEKGERGEGC
ISCDVPILPGPPGPQGLPGEPGFPGSPGAKGDRGAPGFDGVPGVAGSAGVPGLSGSPGAK
GEPGDVFFDSDLKGDKGNPGFPGTPGISGRDGRPGRDGVPGSPGPKGASGTLGLKGDRGS
PGTSGFPGPRGERGFPGSPGVGLPGAPGSKGETGLSGIPGTPGLPGPKGEAGQAVFLHGP
PGPAGVPGSPGLPGIQGDKGVAGIPGRPGQPGEKGTRGPAGIGFPGAPGPQGFPGQPGPP
GLDGAKGDTGSSGVPGAPGFQGPKGDAGVGLPGQKGFPGPKGRDGLPGPKGDQGLPGLLG
EKGLPGVPGQPGSQGDPGSSGLPGLPGSPGAPGIGPPGPPGPLGQSGPPGPIGSSGIKGE
KGYIGVPGQDMPGPKGDKGSQGLPGLPGLQGLPGVPGPQGKEGQPGFPGIKGEMGVMGTP
GIQGPAGPIGSSGLPGEKGQSGFPGVPGLRGGPGFKGEKGETGLPGEPGKMDNVDMESMK
GQKGDQGDRGLQGAIGEKGIQGDPGTTGVPGKDGDPGSPGQPGSKGEVGSPGFPGESGTP
GLKGAMGEMGLPGHSGEKGVPGVLGDPGIPGFPGQKGIKGEKGEAGLPGIGIPGTPGEKG
EQGRSGVPGLPGERGEKGLVGLPGIPGFPGSKGQSGLPGAPGVPGSPGERGEKGLPGLSG
FPGLKGQTGDPGRQGLPGSPGEKGQAGYDGIPGSPGNKGDPGVPGRGLPGLPGEKGEKGI
KGDVGFPGAPGSSGIPGPKGDPGFVGPQGPQGQPGFPGLPGIVTEGPKGDRGPQGQPGIP
GLPGPQGSPGVPGLSGTKGEQGSPGWPGPPGRIGAKGDPGSQGLPGNAGTPGAGGSKGDM
GPPGIPGPQGPKGTPGFVGLKGEQGDQGTPGAKGFPGPPGPPGPAQLLKGEPGLPGLNGP
AGPKGFSGLPGPKGQQGVTGPVGVPGPPGVPGFDGTPGQKGETGPSGPPGPRGFPGPSGP
EGVPGPMGQPGAPSVAHGFLVTRHSQTTEEPQCPPGTRVMYFGYSLLYVQGNERAHGQDL
GTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPVTGDSIQPFISR
CAVCEAPAMVMAVHSQTVQIPPCPDGWRSLWIGYSFVMHTSAGAEGSGQALASPGSCLEE
FRSAPFIECHGKGTCNYYANAYSFWLATIERNEMFKKPTPSTLKAGELRSNVSRCQVCMR
RT
NT seq 5049 nt   +upstreamnt  +downstreamnt
atgggcacccttggcgagggtcgcggccggtggcgcgcttggagggccgcggggctcctg
ctggctgcgctcctgttcagcccatcggcggaggcggccgcggcttgttccagctgtgga
aaatgtgattgcagtggagtaaaggggcagaaaggtgaaagaggcttaccaggtttacaa
ggtttggttgggtttcctggagtacaaggacctgaagggcatacagggccccccggacag
aagggtgacgctggagaaccaggattaccagggacaaaaggaacaagagggccaccaggt
ccggcgggctatccaggaaaccctggcctccctggaatccctggaggagacgggccacag
ggtcctcctggtatcccaggatgcaatgggacaaagggtgaaagaggtcctttgggtccc
ccaggtcaacctggactggctggaaaactggggcctccaggaattccaggaataaaggga
gacccaggagaaattattgggcaattacccggtggtatactaaaaggtgaaaaaggattt
caaggccaacctggattgccgggagtagctggacccccaggacatcaaggccccagtgga
ccccccggacccgaaggaagaccaggtcctcctgggccacctggcataccaggggagaag
ggccatatgggcttaagtttccaaggacccaaaggtgaaaagggtgaacggggagtcatg
ggccctccaggaccccaaggaggtacacctcagcagcaagaaaaagggaccatagccata
caaggagagaaaggtgatcctggtgacaagggagagccgggcttcccaggatcgccaggc
ctaagcatcaaaggagagaaaggagaacctgggaaacccggtccaaggggaaggcctggg
aaggacggagaggatggagaaaagggaagaacaggaccgagtggcccgcctggatttcca
ggattacctggtgcagagggcctgaagggagataagggtgtagctggtcttccgggtctt
ccaggaactgttattggtccagatgaagtggaactgtttggggagaagggagatccaggc
actccgggatttccaggtcaaaaaggagaacaaggttacaaaggttttccagggctccca
ggtattcctggtgttccaggacctcccagcccaggggtaataggggctcctgggattcct
ggcgacagaggagaaaagggggaccagggccatcccggactttcactgtttggacaaaaa
ggaagagatggactcccagggcctcctggtctgccagggcctccagggccacccggcatc
atagatgaaattcttggatgtcaacctggcccccctggtgaccctggtcctccgggctct
gctggtcagcacggtttctcaggagaaaggggagagaaaggtgaaagaggcgaaggttgt
atctcctgtgatgtaccaatccttcctggaccaccgggtccccaaggactcccaggggaa
ccaggctttccaggatcgccaggagctaaaggggaccggggtgctcctggatttgatggc
gtacctggagtggcaggttctgctggagtacctggattatctggaagcccaggagctaaa
ggagaacccggagatgttttctttgactctgatttgaagggtgacaaaggaaaccctggt
ttccctggaactccaggcatttctggccgcgatggaagacccgggcgagatggggtgcca
ggctctccaggccctaaaggtgcatcgggaacacttggcttaaaaggcgaccgtggttct
ccaggaacaagtgggtttccaggcccccgtggagagaggggcttccctggtagtcccgga
gtggggcttccaggggcacctggcagtaaaggagaaacgggtctttctgggatccctggc
acacctggacttccagggcctaaaggtgaagctggacaggccgttttcttgcacggtcca
ccagggccagcgggtgttcccgggtctcctggactaccaggcatccaaggtgacaaggga
gttgctggaatcccaggaagacctggccaaccaggtgaaaaaggcacaagaggcccggca
ggaataggctttcctggtgctcctggccctcaaggttttccaggacagccgggcccacct
ggtctagatggtgcaaagggtgatactggttccagtggggtacctggtgcaccaggtttc
caaggccctaaaggtgatgctggagtaggtctcccaggacagaaaggatttcctggccca
aaaggacgagatgggcttcctggaccaaaaggggatcaagggctacctggtttgctagga
gaaaaaggactcccaggtgtgcccgggcagccaggttctcaaggtgaccccggttcctcc
ggattaccaggtctacctggatctcctggtgcgccaggaataggtccacctggccctcca
ggtccattaggacaaagtggacctccgggaccaattggatcttcaggaataaaaggagag
aaaggctacattggtgtccctggacaagatatgccagggccaaaaggagataaaggtagc
caaggattacctggtcttccaggtttgcaaggactcccaggtgtacctggcccacaagga
aaagaggggcagccgggttttccaggaatcaaaggagaaatgggagttatgggaacccct
ggcatccagggtcctgctggccctataggatcttctggacttcccggtgaaaaaggacaa
tctggttttcctggagtgcccggactcagaggtggccctggattcaagggtgaaaaaggt
gaaactggtctgccgggagagccaggaaaaatggataatgtcgacatggagagcatgaaa
ggacagaagggagaccaaggggacagaggtctgcagggagcaatcggagagaaggggatt
caaggggatcctggcacaacaggtgtgccagggaaagatggcgatcctggttcacctggc
caaccagggagcaaaggggaggttggctctccaggattccccggcgaatcaggcactccg
ggactgaagggagcaatgggagaaatgggcctgccaggacactcgggagaaaagggggtg
ccaggtgttctgggtgatccgggcataccggggttcccaggacagaaaggcatcaaaggg
gagaaaggagaggctggacttcccggaatcggcatccctgggacacctggtgaaaaggga
gaacaaggaaggtcaggtgttccaggcctacctggggagagaggtgaaaaaggtcttgta
ggacttccaggtattcctggttttccaggttccaaagggcagtcaggtcttccaggggct
ccaggagttccaggatcaccaggagaaaggggtgaaaaggggttgcccggcctgtctggt
tttcctggcttaaaaggacaaacaggtgaccctgggcgccagggccttcctggtagccct
ggagagaaaggacaggctggctatgacggaattccaggctcccctggaaacaagggtgac
ccaggtgttccaggcagaggacttcctggtctcccaggggaaaagggcgagaaaggaata
aaaggagacgtgggcttcccaggagctccaggaagttcagggattcctggtccaaaaggg
gatccgggatttgtgggtccacagggtccccaaggccaaccgggttttccaggattgccg
ggcattgtcacagaagggccaaagggagaccgggggcctcaaggtcagccagggattcca
gggctacctggaccacaaggatctccaggagttcctgggctgtcagggacaaaaggagaa
caagggagcccaggttggccggggccacctggaaggataggagccaaaggtgatccagga
tcccaaggactccctggaaatgctggcactcctggagctggaggttcgaaaggtgacatg
ggaccccctggaattccaggccctcaaggtccaaaaggtactccaggcttcgttggactc
aaaggcgaacaaggcgatcaagggactcctggtgctaaaggttttccagggccacctggt
cctccaggtcctgctcagcttctgaaaggagaaccaggtttaccaggtcttaatggccca
gctgggcccaaaggattttctggtcttcccggcccaaaagggcaacaaggtgtaacaggg
cctgtgggggtacctggtccccctggtgtcccgggatttgatggcacacctggtcagaaa
ggagaaacgggtccttctggccctccaggccccagaggttttcctggcccctctggccca
gaaggcgtgccagggccaatgggtcaaccgggcgctccctctgtagctcacggcttcctt
gtgactcggcacagtcagacgacggaagagccccagtgtccacctgggacgagagtcatg
tactttgggtattccttgctttatgtgcaagggaacgagcgtgcacacggccaggacttg
ggcacggctggcagctgtctgcgtaaattcagcacgatgcctttcctgttctgcaatatt
aacaacgtgtgcaattttgcctcccggaatgattactcctactggctctctaccccggaa
ccgatgccaatgagtatggctcctgtgacgggggacagcatccagcctttcatcagcaga
tgtgctgtgtgcgaagctccagcaatggtgatggcagtccacagccagacggttcaaatc
ccgccctgtccagatggctggaggtcactctggatcggctactcatttgtgatgcataca
agtgctggggccgagggctcagggcaagccctggcgtctcctggctcatgtttggaagag
ttccgcagtgcgccattcattgaatgccatggcaagggcacctgcaactattatgcaaat
gcttacagtttctggcttgccacgattgagaggaatgaaatgttcaaaaaaccaactcct
tccacactgaaagcaggggagctccgctccaatgtcagccgctgccaagtttgtatgagg
agaacataa

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