Sphaerodactylus townsendi (Townsend's least gecko): 125435223
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Entry
125435223 CDS
T08213
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
stow03016
]
125435223 (RTCB)
Enzymes [BR:
stow01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
125435223 (RTCB)
Transfer RNA biogenesis [BR:
stow03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
125435223 (RTCB)
Prokaryotic type
tRNA splicing ligases
125435223 (RTCB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
125435223
NCBI-ProteinID:
XP_048357333
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Position
LG06:31982332..31993652
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKLDKNCWRIKTGFVPNMNVEGVFYVNDPLEKLMFEELRNSCRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDECDVQPVKEQLAQSMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHLIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccggagttataacgatgagctgcagtacctggataaactcgacaagaactgctgg
cgcatcaagacgggcttcgtaccgaacatgaacgtggaaggtgttttctacgtgaacgat
cctttagagaaactgatgtttgaagagttaaggaactcttgtcgagggggaggtgctggc
ggcttcctgccagccatgaaacaaattggaaatgtggctgcgctgcctggcattgtccat
agatctataggacttcctgatgtccattctggctatggctttgccattggtaacatggct
gcctttgatatgaatgacccagaagcagtggtatcaccaggcggtgtcggctttgacatc
aactgcggtgtacggctgttgcgtaccaatctcgatgagtgtgatgtccagccggtgaag
gagcagctggcccagtccatgtttgaccacattcctgttggtgtgggatcgaagggtgtc
attcctatgaacgccaaggatttggaggaggctctggagatgggggtggactggtccctg
cgtgagggttacgcctgggctgaggataaagaacattgtgaagaatatgggaggatgctg
caagctgatccaaataaagtttctgcaagagctaagaaaaggggtttgcctcagctgggg
actcttggagcaggaaaccattacgctgagattcaagttgtggatgaaatttataacgag
tatgctgcccggaagatgggcatagaccacaagggacaagtgtgtgtgatgatccacagc
ggcagcagaggcctaggccaccaagtagctacagatgccctggttgctatggagaaagct
atgaagcgagacaaaatcattgtgaatgaccgccagctggcttgtgccaggattgcttcc
caagaaggacaggattatttgaagggaatggcagcagctggaaattatgcgtgggtcaat
cgttcttccatgactttcctcaccagacaggcatttgccaaagtgttcaataccacccct
gatgacctggatttgcatttgatctatgatgtctctcacaacatcgcgaaagtagagcag
catgtggtggatgggaaggaacggactctgttggtacacaggaaaggatcgactcgggct
ttccctccacatcatcccctcatagctgtcgattaccaattgactggccagccagtgctg
attggtgggactatgggaacgtgtagctatgtccttactggtacagaacaaggcatgact
gaaacttttggaaccacctgccatggagcgggccgtgcgctgtcccgagccaaatctcga
cgcaacttggatttccaggatgtcttggacaagctggctgatatgggaattgcaatccgt
gttgcttcgcccaaactggtcatggaagaagcacctgaatcttacaagaatgtgacagat
gtggtgaacacctgccacgcagctggcatcagcaagaaagccattaaactgaggcccatt
gcagttataaaaggctag
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