KEGG   Sphaerodactylus townsendi (Townsend's least gecko): 125435812
Entry
125435812         CDS       T08213                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
stow  Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:stow00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    125435812 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:stow03041]
    125435812 (SNRNP40)
Spliceosome [BR:stow03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    125435812 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    125435812 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML_2 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_SPT8 WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_Vps41 eIF2A Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_RIG_1st Cytochrom_D1 WDR54 WD40_like Beta-prop_Nup120_160 PROPPIN
Other DBs
NCBI-GeneID: 125435812
NCBI-ProteinID: XP_048358173
LinkDB
Position
LG06:complement(112595315..112613592)
AA seq 359 aa
MIDPQKRKAPGPEMALVAAASAAKKPRQELKLGAGPAGGQPPPGALLQAGPPRCSSLQAP
IMLLSGHEGEVYCCKFHPNGATLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN
TDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKL
WDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSV
TGLSLSSEGSYLLSNAMDNTVRIWDVRPFAPKERCVKILQGNVHNFEKNLLRCSWSPDGS
KIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPEEPIILSASSDKRLYMGEIQ
NT seq 1080 nt   +upstreamnt  +downstreamnt
atgatcgatccgcagaaacggaaggcccccgggccggagatggctttggtggcggcggca
tccgcggccaagaagccacgccaggagctgaaattaggagcggggcctgccggagggcag
ccacctccgggggccttattgcaggcgggtccaccgcgatgttcctccctccaggcaccc
ataatgctcctttcagggcacgaaggtgaagtgtactgttgtaaatttcatcctaatgga
gccaccttagcatcagctggatttgacaggctaatcttactgtggaatgtgtatggtgac
tgcgataattatgccaccctgaaaggacatagtggagccgttatggagctgcattacaac
acagatggcagcatgttattctctgcctctacggacaaaacagtagccgtgtgggacagc
gagaccggcgagagggtgaaaaggctcaaagggcacacgtcgtttgtgaactcctgttat
ccagcccggcgtgggcctcagttggtgtgcacaggcagcgatgatggcacagtaaagtta
tgggacatcaggaaaaaagccgctgtccagacttttcaaaacacttaccaagtcttagct
gtcacgttcaacgataccagtgaccagataatatctggaggcatagacaatgacatcaag
gtgtgggaccttcgacagaataaactgacctatacaatgagaggacatgcagactctgtc
accggtctcagtctgagttcagaaggctcgtacttgctttccaatgcaatggacaataca
gttcgcatctgggatgttcgccccttcgcccctaaagagagatgtgtcaagatccttcaa
gggaacgtgcataattttgaaaagaatctgctgcggtgctcctggtcaccagatggaagc
aaaatagcagctgggtcagcagacaggttcgtttacgtgtgggatacaacctccagaaga
attctctacaagctgccaggccatgctggttcaataaacgaagtagcttttcatcctgag
gaaccaatcattctgtcggcgtctagtgacaaaaggctgtatatgggagaaatccagtga

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