Sphaerodactylus townsendi (Townsend's least gecko): 125436241
Help
Entry
125436241 CDS
T08213
Symbol
MTREX
Name
(RefSeq) LOW QUALITY PROTEIN: exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125436241 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stow03019
]
125436241 (MTREX)
03041 Spliceosome [BR:
stow03041
]
125436241 (MTREX)
03009 Ribosome biogenesis [BR:
stow03009
]
125436241 (MTREX)
03016 Transfer RNA biogenesis [BR:
stow03016
]
125436241 (MTREX)
Enzymes [BR:
stow01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125436241 (MTREX)
Messenger RNA biogenesis [BR:
stow03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
125436241 (MTREX)
Spliceosome [BR:
stow03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
125436241 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
125436241 (MTREX)
Ribosome biogenesis [BR:
stow03009
]
Eukaryotic type
Pre-60S particles
Helicases
125436241 (MTREX)
Transfer RNA biogenesis [BR:
stow03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
125436241 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
125436241
NCBI-ProteinID:
XP_048359051
LinkDB
All DBs
Position
LG07:28397551..28449174
Genome browser
AA seq
1041 aa
AA seq
DB search
MADAFGDELFSVFEEDSSAAAPSDSKKTKGAAAASAAAGKAGKQSDGKPQSSVKTLTKAK
RDAETDNTDIIILEKKPKLEDFTTDDLNLADLMPKIKVQAVDTVEGCTHEVALPVDDDFI
ALKPRTGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQ
RVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVM
REVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQP
CHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDPKG
RKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKRMVEEV
FNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATE
TFAMGINMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKM
SPTVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVE
RVNKLLKRGNFXRDXESPMRRSVVIYYKDGQQRWVGEEIEEYIHKPKYCLPFLQPGRLVK
VKNEDDYFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLYCSKESLKNSATEAAKPAKAD
EKGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPID
DMGIKDPGLKKVIQKIEAFEHRMYSHPLHNDSNLETVYKLCERKAQIAVDIKAAKRELKK
ARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLS
AEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNS
FRPNLMDVVHTWANGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELEN
KFAEGITKIKRDIVFAASLYL
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggtgacgagctgttcagcgtgttcgaggaagactcttccgccgct
gcaccgtcggactcgaagaaaacaaagggagcggccgcggcctccgccgctgcgggcaag
gctgggaaacaatcagatggcaaacctcaatcgtctgttaaaactctcacaaaagcaaag
agagatgcagaaaccgataatacagatattatcattttggaaaaaaagcccaagctggag
gattttactacagatgatctcaatttggctgacctgatgccaaaaataaaggtgcaagct
gttgacactgttgaaggttgtacgcatgaggttgctcttcctgtagacgatgatttcatt
gccctaaaaccaagaactggaaaagcggcaaaggaatatccattcatccttgatgctttc
caaagagaagctattttatgcgtggataataatcagtcagttttagtgtctgctcataca
tcagcggggaagacagtttgtgccgaatacgccattgccttggctttgagggaaaagcag
cgtgtgatatttaccagtcctattaaagctctgagtaaccaaaaataccgcgaaatgtat
gaagaatttcaggatgtcggcttgatgactggggatgtgaccatcaaccctacagcatcc
tgtcttgtaatgacaacagagattttaagaagtatgctttacagaggctccgaagtcatg
cgggaagttgcttgggttatatttgatgagatccactatatgagagactcagagcgtggt
gtggtatgggaagaaaccattattttgctcccagacaacgttcactatgtgtttctttct
gccactattccaaatgctcgccagtttgctgaatggatatgccatcttcacaaacagcct
tgtcatgtgatttacactgattatcgacccactcctctgcagcattatattttcccagca
gggggagatggacttcaccttgtggtggatgaaaacggtgattttagagaagataatttt
aatacagctatgcaagtacttcgagatgcaggtgacttagctaaaggcgacccgaaaggc
agaaaaggaggaacaaaaggtccctcaaacgtgttcaagattgtaaagatgatcatggag
agaaacttccaaccagtaataatattcagcttcagtaagaaagactgtgaagcatatgct
cttcagatgacaaaactagacttcaacacagacgaagaaaaaaggatggttgaagaagtt
tttaacaatgcaattgactgtttgtctgatgaagacaaaaaacttcctcaagttgagcat
gtgcttccacttctgaagcgaggcattggaatccatcatgggggcttgcttcctatttta
aaggaaacgatagaaatccttttctctgaaggactcataaaagccttgtttgcaacagag
acttttgctatgggaattaacatgccggctcgaacagtgctgttcacaagcgcccggaaa
tttgatgggaaggatttccgatggatctcctcaggtgaatacattcaaatgtctggtcga
gctggacgtcgaggcatggatgaccggggaatagtcattcttatggtggatgagaaaatg
agcccaacagttggaaaacagcttctaaagggatccgctgaccctctaaacagtgcattc
catttgacatacaacatggtactgaatttgctgcgtgttgaagagattaaccctgaatat
atgttagagaaatctttttatcagttccagcattacagagctattccaggagtggttgaa
agagtaaataagcttctgaaacgcggcaatttttagcgagattgagaatccccaatgaga
aggagtgtggtcatttactataaagatgggcaacagcgctgggtgggagaggaaattgaa
gagtacattcacaagccaaagtactgcttgccgtttttgcaaccaggcaggctggtaaaa
gtgaaaaatgaagatgattattttggctggggcgtggtggtcaacttctccaagaaatcc
aatgttaagcctaactctggtgagctggatccactctacgtcgtagaagtcctcctgtac
tgtagcaaagaaagtttgaagaattctgctaccgaggctgccaagccagccaaggctgac
gagaaaggagagatgcaggttgttcctgttctggtgcatcttctgtctgcaatcagcagt
gttcgactttatataccaaaagatctgaggcctcttgacaataggcagagtgtactgaag
tcaatacaggaagtacaaaaacgttttcctgacggcgttccattgctagatcccattgat
gatatgggcatcaaagatccaggtctgaaaaaagtaatccagaagattgaggcctttgag
caccgtatgtattctcatccgcttcacaacgattctaatttggaaactgtgtacaaactt
tgtgaaagaaaagcacagattgcggtagatattaaagcagcaaagcgggaactgaagaaa
gccaggactgttctacagatggacgaactgaagtgccgtaaacgagttctaagaaggttg
ggttttgcgacctcttccgatgtcatcgagatgaaaggacgagtcgcgtgtgaaatcagc
agtgcagatgagctgttgctgacagaaatgatgttcaatggacttttcaatgacttgtct
gctgaacaagctactgctttgctaagctgctttgtgtttcaagaaaattccagcgaaatg
cccaagctgacagaacaattggcaggcccccttcgccaaatgcaggaatgtgcaaaaaga
attgctaaagtctccgcagaagctaaattggaaattgatgaggaaaattatctcaattcc
ttcaggccgaacttgatggatgtggtacatacctgggccaacggagccacttttgctcac
atatgcaaaatgactgatgtctttgaagggagtataattcgctgtatgaggcggctagaa
gaattgcttcgacagatgtgccaagcagcaaaagccattggaaatacagagctggaaaat
aaatttgcagaaggtattacaaagatcaagagagatattgtgtttgctgcaagcctttac
ctataa
DBGET
integrated database retrieval system
