Sphaerodactylus townsendi (Townsend's least gecko): 125436599
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Entry
125436599 CDS
T08213
Symbol
VCAN
Name
(RefSeq) versican core protein isoform X1
KO
K06793
versican core protein
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow04514
Cell adhesion molecules
stow04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
125436599 (VCAN)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
125436599 (VCAN)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
stow00535
]
125436599 (VCAN)
00536 Glycosaminoglycan binding proteins [BR:
stow00536
]
125436599 (VCAN)
04091 Lectins [BR:
stow04091
]
125436599 (VCAN)
Proteoglycans [BR:
stow00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
125436599 (VCAN)
Glycosaminoglycan binding proteins [BR:
stow00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
125436599 (VCAN)
Lectins [BR:
stow04091
]
C-Type lectins
Lecticans
125436599 (VCAN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
V-set
EGF
Sushi
hEGF
EGF_TEN
Motif
Other DBs
NCBI-GeneID:
125436599
NCBI-ProteinID:
XP_048359714
LinkDB
All DBs
Position
LG07:40257280..40409857
Genome browser
AA seq
3215 aa
AA seq
DB search
MGGKVKMLKNILWICWTLAISYAFRKVKVEKSPPVKGSLAGRAVLPCFFSTLPTLPPSYH
NTSEFLRIKWSKVEQDAGGKDLREHTVLVAQNGNIKIGKGYKGRVSVPSHPEDIGDASLT
MAKLRASDAGVYRCDVMYGIEDTQDIVSLAVDGVVFHYRAASSRYTMNFKQAKEACLENG
AVIASPSQLKAAYEDGFEQCDAGWLSDQTVRYPIRQPRVGCYGDMMGKEGVRTYGYRLPN
ETYDAYCYVGSLNGDVFHVTGPNKLTFEEAKRQCEAQDAVLASVGDLHAAWRNGFDKCDY
GWLADGSVRYPASVARIQCGGGLLGVRTLFRFENQTGFPYPDSRFDAYCFKRKQNVSDSS
SVELHIPVESGSGNLLKELKIMPSKTSVRPHVIPGEKQEENVPKKPIHLSTILPQTVTDS
TDSSELHRMSPFTPPISDFHDDASLSSEKQTEQIEVGPIFRDNLSDPVQTEMSVTLKMEE
TQLGIHPTEVSMEAKTDTKLTTVVIPKEQLTDKHELTLEKDDNGAITTDHRPVTPSSAPE
IDVVKVSKTYFDENATPMPDKLSSVALFESKKPSATKIHELTLSAVTDTIKVVHMESSEL
NGKEGHTVVPADSGKSKDRGGIIPTHTTLDGEVITESKVSATESSMPSFTPSSDTTELPR
GMSTVTDASNIVDMSGGFTKDERDEMTRHHDRITMLAPTPEMKPEKPKAKTDQQYDWAYE
GSATVQQPELGASGKITTVSPSVDIEDIAGTQSVTFTESAKMTTSISLSKTEPDTTPIYK
TSEDIYGKDVVSAVIHTVSLGTVTEPAAVIQGESTTKDQVIGKLATVPGTTNLSFSPKHG
VAVEGPAYEEKHTTIASLDPGVKITVIDAATKPELFFDGDSVTESSPKPTGVSPTNESEN
GSPSTQSVGPTEYIAPVAEKSTYMVKIVSLTTHSPEGSGTTEDAIRTDSVLFSAMAPSKP
TMLSGITTSTVAALAKIQPTSVSKPLITKTQPPLIDREPDEDVNTDMVIIDESISSIKTT
TDDDFTGKITEPEIDTEYFTSSSVTAIAPPTSPSKEVLESQEEPPPTSNADTGLERSPDI
NLFVVAFADNDTDPLHRFWDLFGYQIHPLEIDEPPTDTESTHDEPCTATPDEESSEILIL
DPFFPEMYNLEEEEDCENTTDVTIPPALQFINGKQQVTTSPKDTKAEEARSDQIESLSHF
KNVTFSQINETSVVSENEGSSTIVQNESSEIIETTTTPKPMAESAIIELVFSGESEVSTT
DKTLEITSIHDKSLSEVPESLTQARKDLHKTLPKHSSLSAEYSEDFTTNPQLNRDISSHT
VKTTLKDSKKVSATTSPASDFSTATSVTINMEEMTSNEATALQNDYESSFSPEILSLLKH
SFETTRSPSSLGSPEGSGDVQEENSKSATMTIKMAETEKITVWETSSDFGTTVPTKISHD
TSHRLASLYQEATSTVDQGSVEPFTTQYITELILEKNVLSSTKTAMKSEGDEDRTVSTIS
SPKQYSETVEAEKLLLSNEFVNFTDKVRTESQGSITLSKTSSVTDSPPLKIKDITEKSML
TDEVSGDGSTDVWRKHGTDMLFKGPTSKVVSTDSPFIDPGSGEMDVMIHTTLSPFPLSGP
ENTDVQEKERDILSTDSSSVKHAIFTDPTVAELSTELHRWAMGTITKGQVSKNTADSEGL
LTDTINIATLLSFSEKSILEPNEEVTTYPPAIEQKHDLFETSGVTSVQPLMNITSNIIMT
HDVENIKPVIESTESESTLIISPSPPAILTNDIVLEEIVESGQPKSTRPFSPTTFTDKTS
PMDMGSGDGSRDDGSSTKLVPHGPVERIVDNQFPLMEEGSGDIDSFTDPSMKTTVLSPLL
VERLGTQTTKNVRKDSHMTSIYNLFTDAPTKFGIYSDTEIITTNIGIVGEVSNIQKMKEE
VPVGVEIKDFGVKPTLKDETNSSEEGIFEISGKMALTSNVITEQSYIKSTKSEAGQPGIL
SVSTFGPNSENMNFDVSSATEPVQTKLSPLDKTLRTESKIFQNRDISTSPTFGEKEDLLI
QNAYPTEATSVKHIPLVLTTYKSVTTTVVGNIPLFSEQGSGDELLTVPSTTVAESSAILL
GISNRSDYDIHSKPSRVNFLAKEIKEIHNHTSKSNDDSSSKIKFLHTAAETTRDTVELVS
STVDARLSDTEASTIKLPFPVTSQNQEKYYHKGEDITSSTPMDRITHEDTTGVSEFSRTS
DFRNIETLQTTPVSKMLSRTVDESSGEGSGWMDSVGKHSGSPTQLPKSEIILTPDTHVEN
YSMNSDSAIDKSQIMLAPLEEKQVLPTSANNLSEITVEESSMNIIRDYEELIPIVDDKRN
YSGNISKFSDITLVGPNSGIASDEKTIIDADLLKSTLEDTGAQTMVLTETHLAYDDNTAT
TIEMEIQSTTPEFAFTDNELDSFGDYQETPETRKFIFSEPITDEQTPPPDDVGSGDVISF
TAENPDTRELSNTFTLLPDITFVVSSTISSPTSSRTGEKEKVSLFESKDFASKTPIEDNS
ELQTLSDNQAIADESEIVSTSGLSEKGQIELDEKKDITPFSIPPSLLIKTGQNFTTSSEE
ENIVSVQLVSQRATGNEETHNDGIKTAPTESTKTDPENFLSVTETPKSPVTVHLLNGAYR
YPEEIMLSTVSSVDSEKHDSLLIQSFREVSADITATYKPPTKESSDSTEFLFSSSPELES
EGMANESTTVSSRQVTQMRGKPGHSSEVITWEEITVSEEPLSEKDKPTAFTQLDAKVIIN
SAEEETSESVRELSQLDENSAEGALPRLHTTSSSVPHESKTGGVFDTDEKVNTQPVLPPP
SVDTILENQTDLKVPKESTPISSYTATKRPLPENIPEYNKQTRNTEDLSSSELVTPPFLL
LDVINGSDFLIGTGGGSVEGTAVHIPDQDPCKSNSCLHGGTCYPRDSFYICTCMPGYSGE
RCETDADECQSSPCRNGATCIDGVNTFSCLCLPSYVGALCEKDTETCDYGWHKFQGQCYK
YFAHRRTWDAAERECRLQGAHLTSILSHEEQLFVNRIGHDYQWIGLNDKMYENDFRWTDG
SVLQYENWRPNQPDSFFSSGEDCVVIIWHENGQWNDVPCNYHLTYTCKKGTVACGQPPVV
ENAKTFGKMKPRYEINSLIRYHCKDGFIQRHIPTIRCQGNGRWDLPKITCMTPSSFQRTY
SKKYYYKHSSPEKENSLNSSKHFHRWIRTWQDSRR
NT seq
9648 nt
NT seq
+upstream
nt +downstream
nt
atgggaggcaaggtcaagatgttaaaaaatatcttatggatatgctggaccctagccata
tcatatgcattccgcaaagtgaaagtggaaaaaagtcccccagtgaagggttcacttgct
ggaagagctgtccttccttgcttcttttcaaccttgcctacgttgcccccgagctaccac
aatacaagtgaatttcttcggatcaaatggtcaaaagttgagcaggatgcaggaggaaaa
gacctaagagaacatacagttttggtggcccaaaatggaaatatcaagataggaaaaggc
tacaaagggagagtatcagttccaagccacccagaagacattggtgatgcatcactgacg
atggcgaaattgcgggcaagcgatgctggtgtttatcgctgtgatgtcatgtatggaatt
gaagatacccaagatatcgtctcactggctgttgatggtgttgtgttccactaccgtgca
gccagcagtaggtacaccatgaatttcaagcaggctaaggaagcttgtttagagaatggt
gctgttatagcaagccccagtcaactgaaagctgcttatgaagatggatttgagcagtgt
gatgctggctggttgtctgaccagactgttaggtatcccatcagacaacccagagttgga
tgctatggagacatgatgggaaaggaaggagtcagaacctatggatatcgtcttcccaat
gaaacctatgatgcctattgctatgtgggaagcttgaatggtgatgtcttccatgtaact
ggtcccaacaagctaacttttgaagaagctaaaaggcagtgtgaagcacaggatgcagtt
cttgcttctgtcggagacctgcatgctgcctggagaaatggctttgacaaatgtgactat
ggctggttggctgatggcagtgtgcgctaccctgcttctgtggcaagaatccagtgtgga
ggaggtttactgggtgtgagaaccctctttcgctttgagaaccaaacagggtttccttac
cctgacagccgatttgacgcctactgttttaaacgtaaacagaatgtatcagattcttca
tctgttgaactgcatatacctgtggaaagtggatcaggcaatttattaaaagaactgaag
ataatgccatccaaaacttcagttcggccccatgtcattcctggagaaaaacaggaagag
aacgtacccaagaaacccattcatttatctactattctacctcagactgttactgactct
accgattcatcagaattgcatagaatgtccccatttaccccacctatctcagacttccat
gatgatgcttccttaagttctgaaaagcaaactgaacagatagaagtgggaccgatattc
agagataacttgagtgatcctgttcaaactgagatgtctgtaactctaaaaatggaagaa
acacagcttggcatccatcccacagaagtatcaatggaagcaaaaactgacacaaaactc
acaactgttgtcattcccaaagagcagcttactgataagcatgaacttactttagaaaaa
gatgacaatggtgctattacgactgatcatagaccagtgacccctagcagtgctccagaa
atagatgttgttaaagtgtcaaagacttattttgatgaaaatgccacacctatgccagac
aagttgtcctcagtagctttatttgaaagcaagaaaccatcagcaacaaagatccatgag
ctaacactttctgcagtgactgatacaattaaagttgtacatatggagtcctcagaatta
aatgggaaggaagggcatacagtggtccctgctgattcaggtaagagtaaagatcgtgga
gggataattcccacacacacaactttagatggagaggtgatcacagaatctaaagtgtca
gcaactgaaagcagcatgccatcttttactccttcatcagacactacagagttaccaagg
ggcatgtctactgtcacagatgcaagtaatatagtggatatgtcaggaggttttaccaaa
gatgaaagagatgagatgacaagacatcatgatagaatcacaatgcttgcacccacacca
gaaatgaaaccagagaagcctaaagcaaaaacagatcagcaatatgattgggcttatgaa
ggcagtgctactgtgcagcagccagagttaggggcttcaggaaaaataactactgtttct
ccttcagtagacattgaagacatagcaggcacacagtcagttacatttacagagtcagcc
aaaatgactacttccatttcactatcaaagacagagcctgatactacccccatttacaaa
acttcagaagatatttatggtaaagatgtggtttctgctgttattcatacggttagctta
ggaacagtgacagagcctgcagcagttattcaaggggaatccaccactaaagatcaagtt
attgggaaactggctactgttccaggcactacaaatttgtctttctcacctaaacatggt
gtagctgttgaaggacctgcatatgaggagaaacacacaactatagcatctttggaccca
ggtgtaaaaattactgttattgatgcagccacaaagccagaactgtttttcgatggagat
tctgtcaccgaatccagtccgaaacctactggagtgtctcccacaaatgagagtgaaaat
ggatcaccctcaactcagtctgtaggtccaacagaatatattgctcctgtagctgaaaaa
tctacttatatggtaaaaatagttagccttacaactcacagtccagaaggttcaggaaca
acagaagatgccataagaactgattctgttttattttcagctatggcaccaagcaaacca
acaatgctaagtggcataaccacgtctacagttgctgcattggccaaaattcagcctact
tcagtatccaagcctttaattaccaaaacacaaccacctttaattgacagggaaccggat
gaggatgtgaacacagacatggtaataattgatgaatctatttcttccattaaaaccact
actgatgatgattttacagggaagattacagaaccagaaattgatacagaatattttacg
tcatcaagtgttactgcaatcgccccgcccacaagcccatccaaggaggttttagaatct
caagaagagccgcctccaacttcaaacgctgacacagggctggaaagaagccctgatata
aatctgtttgttgttgctttcgcagacaatgatacagatccattgcacagattttgggat
ttatttggttaccaaattcatccacttgaaatagatgaaccccccacagatactgaatca
actcatgatgaaccctgcacagcaacccctgatgaagaatcttcagaaatcttaattttg
gatcctttctttccagaaatgtacaatcttgaagaagaagaagactgtgaaaatactact
gatgtcacaattcccccagcattgcagtttattaatggaaagcagcaggtgaccacctca
cctaaagatacaaaagctgaagaagcacggagtgatcaaattgaaagtttatctcatttt
aaaaatgtaacattttcacaaatcaatgagacaagcgtagtgtctgagaatgaaggctcc
agcacaatagtgcaaaatgaatcctcagaaataatagaaactacaactacaccaaagccg
atggctgaatctgccattatagaactggtttttagtggggaatcagaagtttctactaca
gataaaacccttgaaataacatcaatacatgacaagtctttatcagaagttccagagagt
ttaacacaagctcgaaaagaccttcataagacactacccaaacactctagcctcagtgca
gaatactctgaagattttactaccaacccccaattaaacagagatatctcttcacatact
gtgaaaacaacattaaaagattccaaaaaggtttctgctacaacttcacctgcaagtgac
ttctccacagccacctctgtaaccataaacatggaagaaatgacatcaaatgaagcaact
gccctacaaaatgattatgaatcatcatttagtcctgagatactttccttactaaaacat
tcttttgaaaccaccagaagtcctagttcactgggtagtccagaaggttctggagatgtg
caagaagagaattctaaatctgcaaccatgacaataaaaatggcagaaacagaaaagatt
actgtttgggaaacctcttcagattttggtacaacagttcctaccaaaattagccatgac
acctcacaccgtcttgcatctttgtatcaagaagctacctctacagttgaccaaggttct
gtagaaccttttacaactcaatatattacagaattaattttagagaaaaatgttctgagt
tctactaaaactgcaatgaaatcggaaggggatgaagacagaactgtgagtaccatttct
tcacctaagcaatattcagaaactgttgaggcagaaaagttgctgttaagtaatgaattt
gtgaattttactgataaggtcagaactgagagccaaggatctataacactcagcaaaacc
tcctcagtaacagatagtccaccactcaaaatcaaagacatcactgagaaaagtatgctt
acagatgaagtatctggagatggatccacagatgtttggaggaaacatggcacagacatg
ctttttaaggggcccacaagcaaagtggtaagtactgactccccatttattgatccaggt
tctggagaaatggatgtcatgattcatactaccttatctccattcccattgtctggacct
gaaaacactgatgtacaggaaaaggagagagacattcttagtacagattcctcatctgtg
aagcatgcaatatttactgaccccacagtggcagagttgagtactgaattgcataggtgg
gccatgggaactataacaaaaggtcaagtatcaaaaaatacagcagatagtgaaggactg
ctaacagatacaattaatatagctacattgttgtcatttagtgaaaagtctattcttgaa
ccaaatgaagaggtgacaacatatcctccagcaatagaacagaaacatgacttatttgaa
acatcaggtgtgacatctgtgcagcctttgatgaacattacttctaatatcattatgacc
catgatgttgaaaatataaagccagtaattgaatctactgaaagtgaaagtactttaata
atttctccaagtcctcctgcaatattgacaaatgacattgttctagaagaaattgtagaa
tctggtcaaccaaaaagcacaagaccgttttctccaacgacctttacagataaaacttcc
cctatggatatgggctcaggagatggatccagagatgatggaagcagtacaaaattagtg
cctcatggtcctgtagaaagaatagttgataatcaatttccattgatggaagagggttct
ggtgatatagactcttttactgatccttctatgaaaaccacagttttatccccattacta
gtggaaagacttggaactcaaactacaaaaaatgtaagaaaagatagccacatgacatct
atatataatttgtttacggatgcacctacaaaatttggcatatacagtgacactgaaatt
atcacaaccaacataggaattgtaggggaagtttctaacatacaaaaaatgaaagaggaa
gtacctgttggggtagaaataaaagactttggtgtaaaaccaacactgaaagatgaaaca
aattctagtgaagaaggcatttttgaaatatcagggaaaatggcacttacctctaatgtg
ataacagaacagtcttacataaaaagtaccaaatctgaagctggacagccaggaatttta
agtgtttccacttttggtccaaactcagaaaatatgaattttgatgtcagttctgctact
gaacctgtgcaaacaaaactgtctccactagataaaaccctcagaactgagtctaaaata
tttcaaaacagagacataagcacttcaccaacttttggagagaaagaagacttgttgata
cagaatgcttaccctactgaagcaacctctgtgaagcatattcctttagtactcacaaca
tataagtcagtgactaccacagttgttggtaatattccactgttctcagaacaaggttct
ggagatgaattattgactgttccatccaccacagtggctgaaagttctgctatattactt
ggaatctcaaatagatcagattatgatattcactcaaaaccttcaagagtaaattttttg
gcaaaagaaataaaggaaattcataatcatactagtaaatcaaatgatgattccagcagc
aaaataaaattcttgcacactgcagctgaaacaacaagagacacagttgagctagtttca
tccactgttgatgctaggttgagtgatactgaagcatctacaataaagttgccctttcct
gtgacatctcaaaaccaagaaaaatattatcataaaggagaagatataacatcatcaaca
ccaatggatagaattacccatgaagacacaactggtgtttctgaatttagtagaacttct
gatttcagaaacattgaaacacttcagaccacaccagtatcaaaaatgttgagccgaaca
gttgatgaaagttctggagaaggatcaggatggatggacagtgtgggaaaacattcaggt
tcacccactcagttgccaaaaagtgaaataatacttacacctgacacccatgttgaaaat
tattccatgaactcagactcagcaatagacaaatcacaaattatgttagcaccattagaa
gaaaagcaagtgctaccaacttcagctaataatctctcagagataactgttgaagaaagt
tctatgaatatcattagagactatgaggaacttatcccaattgttgatgacaaaaggaat
tactctggaaatatttctaagtttagtgacattacacttgttggaccaaacagtggcata
gcatcagatgaaaaaacaattatagatgctgacctcttgaaatcaacacttgaagacaca
ggtgcccaaacaatggtgctcactgagacacacttagcatatgatgataatactgccaca
actattgaaatggagattcagagcacaacaccagaatttgcttttactgataatgaatta
gacagttttggagattatcaagagacgcctgaaacgaggaagttcatattcagtgaacca
attacagatgaacaaacaccaccgccagatgatgtgggttcaggagatgtcatatctttt
acagcagaaaatcctgacacacgagagttatctaacacatttactttacttccagatata
acatttgttgtcagctctaccatatcatctccaacgagctccagaactggtgaaaaggaa
aaagtgtcactgtttgaaagtaaagattttgcatctaaaactccaatagaagacaactct
gaattacagacattgtcagacaaccaagcaatagctgatgaaagtgaaattgtatctact
tctggtctgtcagaaaaagggcaaatagagttggatgaaaagaaagacatcacacctttc
tctatacccccatccttacttattaagacaggacaaaattttacgacaagctctgaagaa
gaaaatatagtttctgtacagctggtttcccaacgtgccacggggaatgaagaaacacat
aatgatggaataaaaactgcacccacagaatccacaaaaacagatccagaaaattttctt
tctgtaactgaaacaccaaaatcacctgtaactgtccatttgctaaatggagcttacagg
taccctgaagaaatcatgttaagtactgtatcatcagtagattctgaaaaacatgattcg
ttattgatacaatccttcagagaagttagtgctgatattacagcaacttataaacctccc
acaaaagaatcatcagatagcacagagtttctgttttcatcttctcctgaactggaatca
gaaggcatggctaatgaaagtacaactgtttctagtagacaagtaacacaaatgagagga
aaaccaggacattcttcagaagtgattacttgggaagaaattactgtttctgaagagccc
ctttcagaaaaagataaaccaacagcctttacacagttagatgccaaagtaataataaac
agtgctgaagaagagacgtctgaaagtgtgagggaattaagtcaattggatgaaaatagt
gctgaaggagccttgccacggttacacacaacatcttcttcagtaccacatgaaagtaaa
acaggtggagtgtttgatactgatgaaaaagttaacacacagccagttttacctccaccc
tctgtggatacaattttggaaaatcagactgatttgaaagtaccaaaggagtcaacacca
atttcttcttacactgcaaccaaaaggccactccctgaaaacattcctgaatataacaag
cagacaagaaatactgaggatttaagctccagtgaacttgtaacaccaccatttttactt
ctggatgttattaatggatcagatttcctgattggcacaggtgggggttcagttgaaggc
acagcagttcacataccagaccaagatccatgcaaaagtaattcctgtctacatggaggc
acatgctatccacgggattccttctacatttgcacatgtatgccaggctacagtggtgaa
cggtgtgaaacagatgctgacgaatgtcaatcaagtccttgcagaaatggagccacgtgc
attgatggggttaacacgttttcttgcctttgtcttccaagttatgttggagctctttgt
gaaaaagacactgaaacctgtgattacggctggcataagttccaagggcagtgctacaaa
tactttgcccatcgtcggacgtgggatgcagctgaaagagagtgccgtctccagggagcc
catctgacgagcatcttgtctcatgaagaacagctctttgtgaaccgtattggccatgac
tatcagtggattggcttaaatgataagatgtatgaaaatgactttcgctggactgatggc
agcgtgttgcaatatgaaaactggagaccaaaccagccagacagtttcttttcctctgga
gaggattgtgtagttataatttggcatgagaatggccagtggaatgacgtgccatgcaat
tatcatctgacatacacctgcaagaaaggaacagttgcttgtggccaacctccagttgta
gaaaatgcaaagacttttgggaagatgaagcctcgttatgaaattaactcattgatcaga
tatcactgtaaagatggtttcatccagcgtcacattccaaccatccggtgccaggggaat
ggacgatgggatttacctaaaattacctgcatgactccatcatcattccaaaggacttat
tctaagaaatattattataaacactcttcaccagaaaaagaaaattcattaaactcatca
aaacattttcatcgttggatcaggacatggcaggattcaaggcgttga
DBGET
integrated database retrieval system
