Sphaerodactylus townsendi (Townsend's least gecko): 125437905
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Entry
125437905 CDS
T08213
Symbol
COL17A1
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
125437905 (COL17A1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
125437905
NCBI-ProteinID:
XP_048361911
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Position
LG08:60927902..61022108
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AA seq
1455 aa
AA seq
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MDPVKKNKRDGTEVTERLITETVTTRLTSLPPKGGGSSGHKTTAYSGGSGVEKRTYTHGS
SYVTSTGGNARMNASSSSYKQAISPSSNLPKSPGSTFERKTYTTRHATYEGSSSANSSPE
FPRKDLGSSATRGRSQTRESEIRVRLQSASPSTRWTELDDVKRLLRGSRSASASPTRSSS
STLPIPKKAVVETKVVTESSQSVSGTYDTAILNAALPQYMWSSTLPAGSSLGGYHNNMTQ
NSSLINTAAHSTGSVFGVPNNLAPNSPTLNAGLSTSSTVFGVQNNLAPSTFATTNSGTTT
SSATYGVKKNTTQSSGVTSTGVSTSSTTATGTVSQNDDILRKDCKFVLLEKENVVPKKEV
ELLIMSKDSGKVFSASSTGLNGGYCTEDTLKKEKQAISSSYAGDSFLKSDTNGGLQSVST
KDKATYAEIQRDNGCGGAGAAPAWCPCASCCSWWKWLLGLLLAWLFLLGLLFGLIALADE
VRKLRSRVESLESRAGNWQVNSDTVESVHVSKVGHFAKHSSTLEDMNEDQLWLLMKRRLD
AERNQGYFRGEPGPKGDMGIEGPKGDRGLPGSAGVPGVIGHPGPEGPKGQKGNIGDTGIE
GPMGQRGREGPSGPRGEPGPPGFGEKGDKGSAGDPGPQGPTGPAGPFGPKGMIGAPGLHG
PPGPPGSQGFRGELGAPGIKGEKGAMGASGSKGDQGEKGPRGLTGEPGSRGPAGPMGEPG
AKGSAGPPGPDGHQGSRGEQGLMGIPGQRGPAGPPGDAGQPGLTGPQGSPGLPGSPGRPG
SKGEPGAPGRVTSTDGASTVALPGPPGPSGGVGPPGPPGVPGPVGPAGLPGAQGPRGERG
PPGESTVVEMRREAVSSAAQEMPQRPGPPGPPGPPGPPGISIPGPPGPSGEPGPRGPPGS
FVPTNENFFAGPPGPPGPPGPKGEQGLPGLQGFTGEPGQPGLPGASSYAGAGVAIQGPPG
PPGPKGDAGVPGAPGIPGGAGSRVSQGPPGPPGPPGQPGLGVGSVREIQQYVAEYLQSDG
RYLVAPQGPPGSPGLPGVVTIDEESLDYGKLARHVMNHMSALGVSWSSSHSSSSTTVYDD
LLALLQRQDVRQLLIGPPGPPGPPGMGGNGVSVSLDYDELTRRVVSYMTSSGIGIGLPGP
AGPPGLPGTSYGDILALLQASEFNGIVGPPGPPGPPGLSTLTASDIFAYLQSGGYSTIPG
PPGPPGPPGPPGFSGTGLGTYDNKIWTDEFRSELIQYLTSDDIRGFIRGPPGPPGPPGPH
GDGSIMSGYYRGSLNSEGSYGRSVSSDVSYDATGTYGGSVGSNGAISGALGAGGSYGESL
NGDESQMRSTGTGRSYGGSLDYNELAVRVYENIQNRGLFQDMMTYATQGPPGPPGPPGIS
RVFASYGNVTEDLMSFFRTYGTIPGQKGEMGFPGPKGDIGRVGPPGRQGPRGPKGEKGEK
GDHAYGRRKRRSIGV
NT seq
4368 nt
NT seq
+upstream
nt +downstream
nt
atggatcctgtaaagaaaaataagcgggatggaacagaagtcacagagagacttatcaca
gaaacagttaccaccagactgacatctcttcctccaaaaggtggtggtagcagtgggcac
aaaacaacagcctacagtggaggaagcggagtggaaaagaggacatacacccatggcagc
agttacgtcacatccacaggtggaaatgctagaatgaatgcctcctcgtcttcctacaag
caagccatcagtccttcctctaatcttcccaaatcacctggatcaacctttgagcgaaaa
acttataccacccgccatgcaacatatgaagggagctccagtgcaaattcatctccagag
tttccaagaaaagatttgggttcctctgctaccagagggcgaagccaaacccgagagagt
gaaatccgagtgaggctgcagagcgcttctccatcaaccaggtggacagaactggatgat
gttaagcgacttcttcggggaagtcgttcagcaagtgccagcccaacacgatcctcatca
agcacactccctatacccaagaaagctgtggtggaaaccaaagtggttacagaaagctcc
cagtcagtatcagggacatacgatacagctatcttgaatgctgccctcccacaatatatg
tggtcctccaccctgcctgcagggtcatctcttggtggttaccataacaatatgacccag
aactcatcgctgatcaacactgcagctcattctactggatcagtgtttggagtcccaaac
aatctggctcccaactccccaactctgaatgcaggcctcagcacctcttcaacagtattt
ggtgtccaaaacaacctggctccaagcacatttgctacaaccaatagtggaaccacaacc
tcatcagcaacatacggagtaaagaaaaatactactcagagctctggtgtgactagtact
ggtgtttccacctcatctacaacagccacgggtacggtttcccagaatgatgacatccta
cgcaaggactgtaaatttgtgctccttgagaaagagaatgtggttcctaagaaagaagtg
gagctgctgatcatgtcaaaagacagtgggaaagtgtttagtgcatccagcactggtctc
aacggaggttattgtactgaggacaccctgaagaaagaaaagcaggctatttcttcctct
tatgctggagattccttcctcaaatcagacacaaatggaggactacagtctgtttcaaca
aaggacaaagccacttatgcagaaatccagcgggacaatgggtgtggaggggcaggtgct
gctccagcctggtgcccttgtgcctcctgttgcagctggtggaagtggctccttggcttg
cttctggcctggctctttctacttggactgctttttgggcttattgccctagcggatgaa
gtgaggaagctgagatcccgtgtggagagccttgagtcccgggctggcaattggcaggtt
aattctgatactgtggaaagtgtgcatgtcagcaaggttggacattttgccaagcattca
tcaactctggaagatatgaatgaagaccagctatggctattaatgaagaggaggctggat
gccgagagaaatcaaggttatttccgaggcgagcctggaccaaaaggtgatatgggcatc
gaagggccaaaaggagaccgaggacttcctggctcagcaggtgttccaggtgtgataggt
catcctgggccggaaggacctaaaggacagaaaggcaacataggtgacactggtatagaa
ggacccatgggacaaagaggaagagagggaccttcaggtcctcgtggagaacctggtcca
cctgggtttggagaaaaaggtgacaaaggctctgctggagatccaggacctcaaggtcca
actggtcctgcaggtccatttggtcccaaaggtatgataggtgcacctggcctccatggt
ccccctggcccacctgggagtcaaggattcagaggtgaactaggtgctccaggtattaaa
ggtgagaaaggtgccatgggagcatctgggtccaaaggtgatcaaggcgagaaaggacct
cgtggtcttacaggtgaacctggttccagagggcccgctggacctatgggtgaacctgga
gctaaaggatcagcaggtccacctgggccagatggacaccaaggttctagaggagagcaa
ggtctcatgggaattccaggccaacgaggtccagctgggcctcctggagatgcaggacaa
ccaggtctcacaggacctcagggatcaccagggctcccaggcagtccaggccgtccaggg
tctaaaggtgaacctggagctccaggccgggttactagcacagatggagcgtcaactgtt
gctcttccaggacctccaggcccatcagggggtgttgggcctccaggtccacctggtgtc
ccaggtcctgtaggtccagctggtcttcctggagctcaaggccctcgtggtgagagagga
ccaccaggtgaaagcactgttgtggaaatgagacgtgaagctgtttcttcagctgctcaa
gagatgccacaaagacctggaccacctggacctcctggacccccaggcccaccaggaatt
tctattccgggaccccctggtccatcaggagaaccaggacctcgaggcccaccaggatcc
tttgtgcccacaaatgaaaatttctttgctggcccaccaggtccacctggccccccaggg
ccaaaaggagaacaagggttgccaggcctacaaggatttacaggtgaaccagggcagcct
ggtcttccaggagcttcttcatatgcaggtgctggagttgccatccaaggacctcctggc
ccacctggccccaaaggtgatgcaggagttccaggagcccctggcatccctggaggagct
ggatcaagagtttctcagggtcctccaggtccaccaggccctcctggacaacctggccta
ggagttggttcagtgcgtgaaatccaacagtacgttgctgagtacttacaaagtgatgga
cgttatctggttgcacctcaaggtccaccaggttctccaggtcttccaggagttgttacc
attgatgaagaatctttggactatgggaagttggcccgtcatgttatgaaccacatgtcc
gctttaggcgtctcttggtcatcttcccattcatcctcatcaacaacagtttatgatgat
cttcttgccctgctacagagacaggatgttcgtcagctattaattggacctccaggtcca
cctgggccacctggaatgggaggaaatggcgtatctgtgtcactggactatgatgaacta
accagacgggtagtcagctacatgactagttcaggaattggtattgggcttcctggccct
gcagggcctcctggtctgcctggaacatcatatggagacatcttagctttgctccaagcc
tcagagttcaatggcattgtaggaccaccaggtcccccaggcccaccgggactttccacc
ctcactgcatcggatatcttcgcatacttgcaaagtggaggatactctacaattcctgga
ccccctgggccaccaggacccccaggacccccaggcttttcaggaactggccttgggacc
tatgataacaagatctggactgacgagttcaggagtgaattgatccagtacctcactagt
gatgacatacgtggttttatcagaggtcctcctgggccaccagggccacctggaccacat
ggagatggaagcattatgtctggatattacagagggtctctaaattcagaaggatcatat
ggcagatccgtgagttcagatgtatcctatgatgccacagggacatacggtggttcagtg
ggaagtaatggagcaatcagtggtgcacttggagcaggtggatcttatggtgaatcactg
aatggagatgaatcacagatgagatcaacagggacaggaagatcgtatggtggatcattg
gactacaatgagttggcagttcgagtttatgaaaacattcagaacagagggctcttccag
gatatgatgacttatgctacgcaaggaccacctgggcctccagggcctcctggcatcagc
agggtgtttgcatcctatggaaatgtcactgaagatctcatgagtttcttcagaacttat
ggaactattcctggacagaaaggagagatgggattcccaggacccaaaggtgatattgga
cgagttgggccaccaggtcgtcaaggcccaagaggtccaaaaggtgaaaaaggcgagaaa
ggtgatcatgcatatggacgaagaaaaagaagaagcattggggtctaa
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