Sphaerodactylus townsendi (Townsend's least gecko): 125438334
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Entry
125438334 CDS
T08213
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow04510
Focal adhesion
stow04512
ECM-receptor interaction
stow04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125438334 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125438334 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125438334 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
stow04147
]
125438334 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
stow00536
]
125438334 (COL4A4)
Exosome [BR:
stow04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125438334 (COL4A4)
Glycosaminoglycan binding proteins [BR:
stow00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125438334 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125438334
NCBI-ProteinID:
XP_048362675
LinkDB
All DBs
Position
LG08:complement(81121012..81204691)
Genome browser
AA seq
1709 aa
AA seq
DB search
MWNIIVKSEHAGRPSSDVNKFNNGGLKSNELQQTTPIKWIKLTNGIAWWLVIILTSLKPV
YGGRYANVGPCDGHDCLACSCFPEKGSRGQPGQPGVQGPIGALGSVGPIGLPGEKGQRGE
MGLPGSAGERGNKGPTGVPGFPGLDGMPGLPGPEGPRGKPGFDGCHGSRGEPGFPGEVGL
VGPIGSFGISGQKGEKGHPANVSRFIKGASGERGEPGSCGLPGPRGERGLRGLPGYPGQP
GSQGALGHPGLPGKQGNPGVGVEGQKGEPGDVGPPGSPGQPLLVGPPSSQLLKGEKGAKG
MPGLMGSKGLPGPKGKLGSGKKGEKGIIGFPGIRGSPGSYGSSGFPGKKGEIGVPGFPGQ
PGIPGVKGHPGERGQPGPPGPQTTLRVGIKGLRGDPGDPGPFGDLGATGLPGPSGTDGMP
GEPGSSLPGSKGSLGIEGPQGSRGEPGLPALSENAVGRPGSPGLPGLPGPPGSQGLPGSP
GVACRGRGSPGQPGVKGQRGPSGGKGEKGGKGSPGNCSCGSGPCGLAGKRGLPGNPGRKG
EIGLPGIYGEKGDPGLPGTIGQPGSSGMPGFSGFTGEKGEKGDSVRITIKGIKGQIGAQG
DSGFPGQNGIPGKDGDPGVPGEKGPQGDDGIAVSGDKGFPGPPGLPGPRGPTGPSGLGNQ
GPQGVCGLPGDPGSPGVKGLPGPKGQKGATLRRATGYPGNPGPPGSPGKQGQKGLRGQPG
RPGPNGFDGPKGQQGKAGTLGNPGPEGIRGETGDLGEEGKSGSRVDGAPGLPGPPGQKGQ
KGIPGDISYGTPGIPGNRGLPGLPGLPGRRGDTGLPGLQGQPGIPGFPGAKGLRGRKGSP
GALGYTGSPGLACDKGLQGPPGPPGYVGPPGTPGLKGSKGLQGDMGPPGPDGMKGMPGLP
GIRGPPGIPGLAGNKGLPGDHGLQGLPGQKGSKGFQGMQGFPGLPGYEGEKGVPGVKGEQ
GLMGQHGPPGECGSEGSKGERGLPGEDGCVILMVEKGQNGDPGLPGEEGLLGTQGDKGSP
GSRGIPGQPGRSGPVRKGEPGDAGQIGFQGVPGPPGLPGLRGIVGFQGQQGEQGAEGLPG
IPGRPGLDGAKGPKGSRGDPADVDPLVKRGPPGNRGLPGLAGFPGVQGVSGAQGETGRPG
PKGLLGYPGTPGFPGAQGAAGLVGMPGEQGNPGFLGPPGFPGLLGPPGRKGPPGLLGIHG
LDGLQGQKGLPGPPGLSKMGPPGCVGEPGSKGNGGELGPSGISLPGPPGDKGSLGPSGKP
GAPGPAGPIGQLCRNAPPGPPGDQGPAGLDGIRGLPGEPGPQGKTIFVNGDPGDSGIPGL
PGVPGPPGNPGNKGVQGKQGRVGLKGPVGNPGPQGPPGSNGEPGDQGFQGSTGPLGPKGD
PGEPGKIDYSSYPKRPGPPGVLGQRGAPGSLGVPGPPGCPGPQGRKGEEGLLGQPGESGL
PGQPGTTGTQGDKGEKGYPGLQGPPGQTGMPGPPGTETRAAASGFLLVLHSQSDQEPLCP
EGMPKLWTGYSLLYLEGQEKAHNQDLGLAGSCLPVFSTMPFAYCNIDQVCYYASRNDKSY
WLSSAAPLPMMPISDEEIQPYISRCAVCEAPAQAVAIHSQDQSIPPCPLNWRSLWIGYSF
LMHTGSGDQGGGQSLMSTGSCLEDFRSAPFIECQGQRGTCHFFANEYSFWLLTIKPELQF
ASAPLSGTLKDGQEQRRHIGRCQVCMKYG
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacatcatcgtcaagtcagaacatgcaggcagaccaagctctgatgttaacaaa
ttcaacaacggaggcttgaaatcaaatgaattacaacaaacaacacctattaaatggatt
aaacttacaaatggaattgcatggtggctagtaataatacttacttcactgaaaccagtt
tatgggggtagatatgcaaatgttggaccttgtgatggacacgattgtttggcctgttca
tgctttcctgaaaaaggttcaagaggtcagcctggacagccgggagtccagggtccaatt
ggtgctttgggttccgtaggacccattggcttgccaggagaaaaaggtcaaagaggtgaa
atgggtcttcctgggtcagctggagaaagaggcaataagggtcctactggcgttccagga
tttccaggtttagacggtatgcctggattacctggacctgaaggacccaggggcaaacct
ggctttgatggatgtcatggttcaaggggggaaccaggatttcctggagaggttggcctt
gttggaccaataggctcatttggtatttctggacaaaaaggagaaaaaggacaccctgca
aatgtttccaggttcattaaaggggcttctggagaaagaggggaaccaggatcatgtgga
ctgcctggtcctagaggagaaaggggactaagaggcctacctggatatccaggccaacca
ggatcacagggtgctttgggtcatcctggtttaccaggcaaacagggaaatccaggtgtt
ggagtggaaggacaaaaaggagagccgggtgatgtgggacctcctggatctccaggtcag
ccattattagttggacctccaagttctcaactactgaagggagaaaagggtgcaaaagga
atgcctggattgatgggttccaaaggattgcctggccccaaaggtaaacttggaagtgga
aagaaaggcgagaaggggattattggctttcctggaatacgggggagtcctggttcatat
ggatcttcaggttttccaggaaaaaagggtgaaataggagttcctggttttcctggacaa
cctggcattccaggcgtcaaggggcaccctggcgagcgcgggcagccaggtccaccagga
cctcagacaacgttacgtgttggaatcaaaggtcttcgaggagatcctggagatcctgga
ccttttggagatcttggagccactggattgccaggtccttcgggcacggatggaatgcca
ggcgaacctggatctagtcttccaggttccaaaggtagcttgggaatagaaggtcctcaa
ggctctcgaggtgagcctggcctccctgctttatctgaaaatgctgtaggaagaccagga
tctccaggattaccaggtttaccaggaccaccaggaagccagggcttgcctgggtcacca
ggcgtagcttgcagagggagagggtcccctggacaaccaggagttaaaggccagaggggc
ccatcagggggaaaaggtgaaaaaggaggaaaaggaagtccaggcaactgttcctgtggc
tctggtccctgtggcttggcaggaaaacgaggcctacctggtaatcctggaagaaaagga
gaaattgggttacctggaatatatggagaaaaaggtgacccaggtttacctggcacaatt
ggtcaaccaggttcctctggaatgccagggttctctggattcactggagaaaaaggagag
aaaggtgactcagttagaataacaataaaagggataaagggacaaataggcgctcagggg
gactctggatttccaggacagaatggcattcctggcaaggatggagatccgggagttcct
ggtgaaaaaggacctcagggtgatgatggaattgctgtatcaggtgataaggggtttcct
ggccctccaggacttcctggtcccagagggcccacaggaccatcaggacttggaaaccaa
ggtccacaaggtgtctgtggtctaccaggagatccaggaagccctggtgtaaaaggattg
cctggccccaaggggcaaaaaggggccactcttcgacgtgcaacaggatatcctgggaat
ccaggcccacctggttctccaggtaaacaaggtcaaaaaggattaagaggacaacctggt
cgacctggtcccaatggttttgatggtccaaaaggccaacagggcaaagcaggaacatta
ggcaatcctggtccagaaggtattagaggtgagactggtgaccttggtgaagaaggtaaa
agcggctccagagtggatggtgctccaggattgccaggtcctcctgggcagaaaggtcaa
aaaggtattccaggtgacatcagttatggcaccccaggaattccaggcaaccgaggcctt
ccaggactaccaggtttgcctggtagaagaggggacactggtcttcctgggcttcaagga
cagcctggcataccaggattcccaggagctaaaggtcttagaggaagaaagggttctcct
ggagctttgggctatactggctcacctggcctggcctgtgacaaaggcttgcaggggcca
ccaggacctccaggctatgttggaccaccaggcactccaggtttaaagggctccaaagga
ctccaaggtgatatgggaccaccaggcccagatggaatgaaaggcatgccaggattgcct
ggaataagagggccacctgggattccaggcttagcaggaaataaaggccttccaggagat
catggattgcaaggcctcccaggacaaaaaggaagcaaaggattccaaggtatgcaggga
ttcccagggctaccaggatatgaaggagagaagggagttcctggtgtaaaaggtgaacaa
ggattaatgggtcagcatggtccccctggagaatgtggatctgagggctccaaaggtgaa
agaggtcttccaggtgaagatggctgtgtcattctaatggttgagaaaggacaaaatgga
gatccaggccttcctggtgaagaaggtttactaggaacacagggtgacaaaggcagtcct
ggatccaggggaatcccaggacagccaggaagaagtggacctgtgcgaaagggtgaacct
ggtgatgctgggcagattggctttcaaggggtgccaggcccacctgggcttccaggattg
agaggaatcgttggctttcaaggacagcagggtgagcagggtgcagagggattaccaggc
attccgggaagaccaggacttgatggtgcaaaaggacctaaaggtagcagaggtgaccca
gctgatgttgacccgcttgttaagagaggtcctccaggaaatcgaggattgccaggactt
gctggattcccaggtgttcaaggagtatcaggtgctcaaggggaaacaggaagaccagga
cccaaagggttacttggatatccaggaactcctggattcccaggagctcagggagctgca
ggattggtgggaatgccaggtgaacaaggtaaccctggctttttgggacctccaggtttt
ccaggattacttggacctccaggtagaaaaggtcctccaggattacttggaatacatggc
ttggatggactacagggtcaaaaaggcttacctggacctccaggtttaagtaaaatgggg
cctccaggatgcgttggagaacctggatcaaaaggcaatggaggagaacttggaccatca
ggaatttccctcccaggacccccaggagacaaagggtcattagggccatctggcaagcca
ggggctcctgggcctgctggacctattgggcagctatgtagaaatgcaccacctgggcct
ccaggtgaccaaggccctgctggtttggatggcatcagaggccttcctggagaacctgga
cctcaggggaagactatttttgttaatggggatccaggtgacagtgggattcctggtcta
cccggggttcctggtccacctgggaatccaggaaataaaggtgttcaaggaaagcaagga
cgagtaggcttaaaaggtccagtgggaaacccaggaccacaggggcctcctggttctaat
ggggagcctggtgatcaaggattccaaggatccactgggcctttgggccccaaaggtgac
ccaggtgaacctggaaaaattgattattcttcatatcccaagcgtccaggaccacccgga
gtattaggccaaaggggggcaccaggttctctaggagttccagggccaccaggttgtcct
ggtccccaaggaaggaaaggagaggaagggttgttaggtcagccaggtgagagtggcttg
cctggacaacctggaaccactggtactcaaggggacaagggagaaaaaggatacccaggg
ctgcaaggtcctccagggcagactggcatgccagggccaccagggactgaaacaagagct
gctgctagtggtttcttgcttgttctgcacagtcaatcagaccaagaaccactgtgtcca
gaaggaatgccaaaattatggactggatacagtctgctgtatcttgaagggcaggagaaa
gcccataatcaagatcttggtttggctggatcttgcctccctgtatttagcaccatgcct
tttgcctattgcaatatcgatcaggtctgctactatgcaagcagaaatgataaatcttac
tggttgtcaagtgctgctcctttacccatgatgcccatctctgatgaagagatacagccc
tatattagcagatgtgctgtatgtgaagctcctgcccaagctgttgccattcatagtcaa
gatcaatccattcctccgtgcccgttgaactggagaagtctttggataggctattcattt
ttgatgcacactggatccggtgaccagggaggtggacagtctctcatgtcaactggaagc
tgccttgaagatttcagatcagcaccctttatcgagtgtcagggtcagcgaggaacatgc
catttttttgccaatgaatacagcttttggttacttactataaagccagaattgcaattt
gcatcagctcctctctcagggacacttaaagatgggcaagaacaacgcagacatataggc
agatgccaggtctgcatgaaatacggataa
DBGET
integrated database retrieval system
