KEGG   Sphaerodactylus townsendi (Townsend's least gecko): 125438371
Entry
125438371         CDS       T08213                                 
Name
(RefSeq) collagen alpha-3(IV) chain-like
  KO
K06237  collagen type IV alpha
Organism
stow  Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow04382  Cornified envelope formation
stow04510  Focal adhesion
stow04512  ECM-receptor interaction
stow04518  Integrin signaling
stow04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:stow00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    125438371
   04518 Integrin signaling
    125438371
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    125438371
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    125438371
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    125438371
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:stow04147]
    125438371
   00536 Glycosaminoglycan binding proteins [BR:stow00536]
    125438371
Exosome [BR:stow04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   125438371
Glycosaminoglycan binding proteins [BR:stow00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   125438371
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 125438371
NCBI-ProteinID: XP_048362756
LinkDB
Position
LG08:81243166..81313160
AA seq 1550 aa
MPGIPGYSGPPGLSGEPGNAGLPGWPGLPGYNGTKGDRGFPGIPGPGGFPGLPGPKGIKG
ERGCPANGYDEGNRARGDPGPPGMPGSQGEPGPQGLPGEVGMEGPPGFPGEQGKSGLPGP
KGLMGVKVIGAKGREGDSGLMGPPGPPGTVIVTLTGAENTTELTGDKGERGSPGPSGPSG
ESGLPGDFQSKRGDTGEPGSEGKPGKDGIPGPPGLRGAKGDQGLQGLPGKAGLKGNKGEV
GQQGIQGPTEYYNEMPGEKGSKGYPGPPGPKGQPGRPGLQGSPGAPGRPGVSRASPRGPQ
GAPGPKGSKGERGKHGTNAIGPRGFPGSPGRPGSPGSPGSPGKLGTVTFKEGPPGPDGSS
GCMGSPGLTGGSGAKGEEAGPCNQCTYVIGAPGPTGIPGPEGQQGVKGGEGKVGPKGSGG
TPGPQGLPGIQGLPGLPGKQGLKGLKGLPAYAQSEGPEGDKGEPGHRGCSGEKGADGLPG
QPGLKGSRGSVGEQGTDSPKGDRGPPGRTGEPGLLGEVGLHGPPGYGLQGMEGPKGSQGV
PGLPGLHGVAGPQGEPGKVNTIPGPPGLQGPDGRPGLQGGRGSVGSRGPRGNPGLPGPEG
NPGLAVIGLPGQPGPKGDKGPQGSKGLPGCPGKLGEPGLPGKPGIPGEKGEPGPVFPGQQ
GRLGSPGEEGSSGEKGERGVPGLPGQQGRPGYDGADGPRGEPGAPGIPGENGIPGKMGDC
LTGLPGPSGPCGIMGPQGVKGVPGPQGDPGIPGLDIPGPQGQFGLPGSPGSQGSKGLPGL
KGQAGRPGILGTTGPRGDRGLMGPVGMPGLRGVSGNPGIPGSRGFPGLPGPKGRKGSSGE
QGLPGRVGHKGEKGEQGAQGCMGLHGPPGTPGPSGSKGDKGLSGIPGIQGLPGTPGDRGD
MGVPGPKGEQGSPGLPGPVGISGQPGLAGVPGDKGEPACATPGNPGPKGDSGPPGEKGRK
GESGSPGLPGLVGEPGPPGNRGDSGLPGIPGHPGCAGDMGDKGRKGLAGQNGVRGPPGSS
GLPGDDGPVGERGNLGHDGIPGSPGEKGAQGSPGRGAPGAQGLPGPKGIKGDMGMAGFPG
LQGVKGLKGDQGPSGPPGLPGQPGLPGELGSVISGPKGNRGPTGPDGKPGVPGNPGPAGP
SSYSIKGSKGIQGTDGCPGLPGPKGDVGLPGPPGIDGIPGYQGPRGDIGLQGPPGRKGEK
GNRGPPGLRGVAGPGGPKGPPGQPGPPGHAVCFPGNPGLPGPPGIPGNLGDPGAPGPSGP
PGPPGMKGQPGRLGISGRPGPPGLKGAKGFKGQRGLPGFLGLPGIKGSPGYPGTYLPGTA
KRGFVFSRHSQSTKIPLCPPGTTQIYSGYSLLFVQGNEQAHGQDLGTTGSCLQRFTTMPF
LFCNPSNVCSFASRNDYSYWLSTAEPMPADMAPISGKALEPYISRCITCEGSAMVITVHS
QTTSVPPCPEDWQSLWKGFSFVMYTGAGSEASGQALASPGSCLENFYAIPFIECHGRGTC
NYYSNSYSFWLASLNSRRMFRKPLPQTVKAGELEKIISRCQVCMKRSLEN
NT seq 4653 nt   +upstreamnt  +downstreamnt
atgccaggaatacctggttattcaggtcctccaggtctttcaggtgaaccaggaaacgct
ggtctgccaggatggcccggattaccaggatataatggaaccaagggtgatcggggattc
ccagggattccaggaccaggaggatttccaggattaccaggtcctaaaggcatcaaagga
gaaagggggtgtcctgcaaatggatatgatgagggtaacagagcaagaggtgatcctggg
cctccgggaatgcctggctctcagggtgagccaggacctcaaggattgccaggtgaagtt
ggaatggaaggtcctccaggatttccaggagaacaaggcaaatcaggattgccagggccc
aagggtctcatgggtgttaaagtcattggagccaaaggtcgagagggtgacagtggatta
atgggcccccctggaccaccagggacagttattgtaacactaactggagctgaaaataca
acggaattaacaggagataaaggagaaaggggatcaccgggaccctctggaccatcagga
gaatcaggtttacctggtgattttcaaagtaaaagaggagacacaggagagccaggctct
gagggtaagcctggaaaggatggcatccctggtcctcctggcttacggggagcaaaaggt
gatcaaggtttgcaaggattgcctggaaaagctggattaaaggggaataaaggtgaagtt
ggccagcaaggaattcaaggtccaacagagtattacaatgagatgcctggtgaaaaagga
agtaaaggctacccagggcccccaggacctaaagggcagccgggaagacctgggctacaa
ggttctcctggggcacctgggaggccaggtgtttccagagctagtcccagaggtccacaa
ggtgctccaggccccaaaggaagtaaaggagagagggggaaacatggcacaaatgctatt
ggaccacgaggatttcctgggtctccaggtagacctggctcaccaggatcaccaggttca
ccaggaaaactaggtacagtaacttttaaagaaggaccaccaggaccagatgggagttca
ggatgtatgggttctccaggacttacaggaggaagtggagctaaaggtgaagaagcaggc
ccatgtaaccagtgtacttatgttattggagcacctggccctactggtattcctggacct
gagggccaacaaggagtcaaaggtggggaaggaaaagttggccctaagggatctggagga
acccctgggcctcaggggcttcctggaattcaaggtcttcctgggcttccaggaaaacaa
ggccttaaaggtttgaaaggtttgccagcatatgcacaatcagaaggtcccgaaggagac
aaaggagaaccaggtcacagaggatgctcaggtgaaaaaggtgcagatgggttgcctgga
caacctgggttgaaaggttcgagaggttctgtgggagaacagggaactgatagtccaaaa
ggggacagaggccctccagggagaactggtgagccaggtcttcttggagaggtagggttg
catggaccaccaggatatggactacaaggaatggaaggacctaaaggatctcaaggagtt
cctggtttgcctgggttacatggagttgctggcccccaaggtgaacctggtaaagtaaat
acaattcctggacctccaggacttcaggggccagatggtagacctggattacaaggagga
agaggcagtgttggatccagaggtccgcgtggcaacccaggcctcccgggaccagaaggc
aatcctggtttagcagtgattgggcttcctgggcaacctggtccaaaaggagacaaagga
cctcagggatctaaaggactaccaggatgcccaggaaaattaggagaaccaggattacct
ggaaaacctggaatcccaggagaaaagggggaaccaggtccagtttttcctggacagcaa
ggtagactaggctcaccaggagaagaaggctcatcaggtgaaaagggtgaaagaggagtc
ccaggacttccaggtcaacaaggtcgaccaggttatgatggtgctgatgggccaagagga
gagcctggagcccctggcattccaggagaaaatggtattccaggaaaaatgggtgactgt
cttactggtttaccaggaccatcaggcccttgtggaattatgggcccacaaggagtcaaa
ggtgtaccaggaccccaaggagacccaggtattccaggattagacatccctgggccccaa
ggacaatttggactaccaggatcacctggctctcaaggaagtaaagggcttcctggcctc
aaaggccaggcaggcaggccaggaatattaggaacaacaggcccaagaggagacagaggc
ttaatgggtcctgtgggtatgcctggattacgtggagtctctggaaatccaggtatccct
ggaagcagaggttttcctggccttccaggaccaaaaggtagaaagggatcttccggggag
caaggactgcctggaagagtgggacacaaaggagaaaaaggagagcaaggtgcacaagga
tgcatgggtctccatgggccgccaggaacaccaggtccatcaggttccaaaggtgataaa
ggactttctggaattcctgggatacaaggactgccaggaaccccaggagacagaggggac
atgggagttccaggtcctaaaggtgagcaaggttctccaggtttgcctggacctgtaggt
atctccggtcaacctggccttgctggtgttccaggggacaaaggagaaccagcttgtgct
acaccaggaaatccaggacccaagggcgattcaggtcccccaggagaaaagggaagaaaa
ggcgaaagtggatcaccagggctaccaggtcttgttggagaacctggacctcctgggaac
agaggggattctggattaccagggattccagggcatccaggatgtgcaggtgatatgggt
gataaagggagaaaaggattagcaggacaaaatggcgtcagaggtcctccaggttcatct
ggattaccaggagatgatggaccagttggtgagaggggtaatctgggacatgatggtatt
ccaggttccccaggtgaaaagggagcacaagggtctccaggtcgaggagctccaggtgct
caaggcctacctggtcctaaaggtatcaaaggagatatgggaatggctggttttccagga
ctacaaggtgttaaaggtcttaagggggaccaaggaccaagtggacctcctggcttacct
ggacaaccaggacttccaggggaactagggtcagtgattagtggcccaaaaggaaataga
ggccccactggcccagatgggaaaccaggtgttcctggtaatccaggacctgctgggcca
tctagttatagtattaaaggaagtaaaggtattcaaggaacagatggctgtccaggactt
ccaggacctaaaggtgatgttggtctacctggtcccccaggaattgatggtatccctggg
tatcaaggtcctagaggagacatcggtctacaaggacctccaggcagaaaaggagaaaaa
ggcaatcgtggaccacctgggctaagaggagtggcagggcctggggggcccaagggacca
cctggtcaacctggaccacctgggcatgctgtctgtttcccaggaaatccaggactacct
ggacctccaggaatcccaggaaatctgggagatccaggtgccccaggaccatctggacca
ccagggcctccaggtatgaaaggtcagccaggcagacttgggatttctggtagacctgga
ccacctgggctgaaaggagccaaaggatttaaaggacaaagaggtttacctggatttctt
ggtttacctggtataaagggatcacccggatatccaggaacatacttacctgggacagca
aaaagaggcttcgtcttttcacggcacagccaatcaacaaaaattcctttatgtccacct
gggacaactcagatctatagtggttattctctcctttttgtacaagggaacgagcaagca
cacgggcaagatcttggaacaacaggcagctgtcttcaaagatttaccaccatgcccttt
ttattctgcaatcccagtaatgtatgtagctttgcttctcgcaatgactattcatactgg
ttgtcaactgcagaaccaatgccagctgatatggcaccaatttctgggaaagcattggag
ccctacattagcaggtgcattacctgtgaaggctctgcaatggtaataacagtccacagt
caaacaacttcagtcccaccatgtcctgaagactggcagtctctttggaaaggattttct
tttgttatgtatacaggtgccggctcagaagcatctggacaagcactagcatccccagga
tcgtgtttagaaaatttttatgccatcccatttatagaatgtcatggcagagggacatgt
aattattactcaaactcctacagtttttggctggcatcattaaattcaagaagaatgttc
aggaaaccattgccacaaactgtgaaagctggagaactggaaaaaatcatcagccggtgt
caagtctgcatgaaaagatcactggagaattaa

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