Sphaerodactylus townsendi (Townsend's least gecko): 125439777
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Entry
125439777 CDS
T08213
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03030
DNA replication
stow03410
Base excision repair
stow03420
Nucleotide excision repair
stow03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125439777 (RFC1)
03410 Base excision repair
125439777 (RFC1)
03420 Nucleotide excision repair
125439777 (RFC1)
03430 Mismatch repair
125439777 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stow03032
]
125439777 (RFC1)
03400 DNA repair and recombination proteins [BR:
stow03400
]
125439777 (RFC1)
DNA replication proteins [BR:
stow03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
125439777 (RFC1)
DNA repair and recombination proteins [BR:
stow03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
125439777 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
BRCT_2
AAA_30
AAA_14
AAA_5
RuvB_N
AAA_16
Rad17
AAA_33
AAA_18
RNA_helicase
nSTAND3
AAA_7
AAA_17
NTPase_1
AAA_19
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
125439777
NCBI-ProteinID:
XP_048364940
LinkDB
All DBs
Position
LG10:12138774..12187623
Genome browser
AA seq
1141 aa
AA seq
DB search
MDIRKFFGVVNVGKRHENDVVKNTDKLKNKEGEKSKSKEIKVKKSSPEEDSKQRQVTKKR
RIIRDSDSEEEIQLVKKSKKSPVRKQSVKPDKILKKDPVVYVSETDEDEDFVHKKVSQKP
KENGTSAGLHLGTSAAPKADTKAKIKTKPSSPVKLTPTSVVDYFGTSSIQRSEKKLVSSK
RKEPSQNRDSTLNDEAIARHLQLQEDAEVERQLHEDEEFARTLAMLDETPKKKKPRKDPE
GKQEVSKAKTSPEEIEKNKRTHKVKSANLTLDSRNYTAKNQTGTESSGILRDAYPESSVS
KERKDVGDKMQSSKVSSKLAALKQKEESIRKENGTPKIKSVSPKEEKTPKKEKVSPQKSE
SVSPEDSEKKRANYQAYRSFLNREGPKALGSKEIPQGGENCLEGLTFVITGVLESIERDE
AKSLIERYGGKVTGNISKKTSYLIKGRDCGVSKCEKASAMGTKIVDEDGLFDLIRNMPGK
KSKYEVAAEAEATKAKPKWGRTPQKVETEKRKISPAKQEIEAKKKKPSLGKDGAAKSAKK
ETTEARRGLAFGQKASEKKHAPEDAESPVQETSRGGPEVLLWVDKYKPTSLRTIIGQQGD
QSCANKLLRWLRNWHRNTSEDKHVKSSKFGGKDDGASFKAALLSGPPGVGKTTTASLVCE
ELGLSYVELNASDTRSKNSLKEVIAESLNNTSIQGFCSGASTSVSSKHVLIMDEVDGMAG
NEDRGGIQELIDLIKRTKVPIICMCNDRNHQKIRSLVHYCLDLRFQRPRVEQIKGAMMSI
AFKEGLKVPPPAMNEIILAANQDIRQVLHNLSMWCAKSKVLTYDSVKEDASKAKKDIKLG
PFDVVRKVFAAGEETSHMSLIDKSDLFFHDYSLAPLFVQENYIHVKPAAAGGNMKKHLML
LSKAADSISDGDLVDRQIRSRQNWNLLPIQAIYSSVLPGELMRGYMNQFPNFPSWLGKFS
STGKHDRILQELSMHMSLRTHASKRAVNLDYLSYLQNAIVSPLACLGTEGVQDAVAVMDS
YYLMKEDVQNLTEVTSWGGKPSAFSKLDSKVKSAFTRSYNKEVHLTPYSLQIVKKSKRQA
GSSVDTELNEEVEADEVQSEEEQETIEHDAMIKKKTSSSKQPKVERTDDTKKGKKAKKKS
K
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atggatattcggaaattctttggcgttgtaaatgttggaaagagacatgaaaatgacgtc
gtcaaaaacacagataaactcaaaaataaggaaggcgagaagtcaaaatcgaaggaaatc
aaggtgaagaagtcatctcctgaagaggactccaaacaaaggcaggttaccaaaaagagg
cggatcatccgtgattcagattctgaagaggagatacagttggtgaaaaaatcaaagaag
tctcctgttagaaaacagtcagtaaaacctgataagattctgaagaaagacccggttgtt
tatgtttcagagacagatgaagatgaagacttcgttcataagaaggtctcccagaaaccc
aaggagaatgggacttcggcaggccttcatctcggaacgtctgcagcaccaaaggcagac
acaaaggcgaaaattaaaactaagccctcatctccagtgaaactgacaccaacttctgtg
gtggattactttggaaccagtagcatccagcgatcggagaaaaagctggtgtcgagcaaa
agaaaagaaccttcacaaaacagggattccactctcaatgatgaagctattgccaggcat
ctacagcttcaagaagatgctgaggtggagagacagttgcatgaagatgaagaatttgct
agaacgctggccatgttggatgaaactccaaagaagaaaaagcctcgaaaagacccagaa
ggtaagcaggaggtttcaaaagcaaaaactagccctgaggaaattgaaaaaaataagcgg
actcacaaagtgaaatctgccaatttaacccttgactcaagaaattatactgcaaagaac
cagactggcacagaaagttccggaatactgcgggatgcatacccagagtcttctgttagt
aaagagaggaaggacgtgggggataagatgcagtcttcaaaagtgagctctaaactagca
gctctgaagcaaaaagaagagagtatcagaaaagaaaatgggactccaaaaataaaatcc
gtttcaccaaaggaagagaaaacacctaaaaaagagaaagtttctccccaaaaatctgag
tctgtaagtcctgaagattctgaaaagaagcgagccaactatcaggcttatagaagcttc
ctgaatcgagaaggtcccaaagcactcgggtctaaagagataccacaaggcggtgaaaat
tgcttggagggtcttacatttgtgatcacaggtgttttggaatcaattgaacgagatgag
gccaagtctctaattgagcgctatggtggaaaagtaactggtaacatcagcaagaagacc
agctatcttattaagggccgagactgtggcgtgtccaagtgtgaaaaggcatcagctatg
gggaccaaaattgttgatgaagatggtttatttgacctcattcgaaatatgccaggcaag
aagtcgaagtatgaagtggcagctgaagctgaggcaacgaaagcgaaacccaaatggggg
agaacgccacagaaggtagagacagaaaaaagaaaaattagcccggccaagcaggagatt
gaggctaaaaagaaaaagccctcccttggaaaagatggggccgcaaaatccgccaagaag
gaaaccacggaagctaggagaggtttggctttcggtcagaaagcctcggagaaaaaacat
gccccagaggatgctgagagccccgttcaagagacaagcagaggcgggccagaggtgttg
ttgtgggtggacaaatacaagcccacatccctcagaacaatcataggacagcaaggagat
cagagctgtgccaataaactcttgcggtggcttcgaaactggcacaggaacacttcagag
gacaagcatgtaaaatccagtaagtttggaggcaaagatgatggcgctagtttcaaagca
gctctgctttcggggccaccaggggttggtaaaactactactgcttccttagtttgtgag
gaactgggtttgagttatgtggaactaaatgccagcgacacacgcagtaagaacagcctg
aaggaagtgattgctgaatctctgaataacaccagcatccaaggattctgttcaggagca
tcaacttcagtcagctcaaagcatgtcctaatcatggatgaggtggatggaatggcaggc
aacgaagacagaggaggaattcaggaactaattgacctgattaagcgtacaaaggttcca
ataatttgtatgtgtaatgatcggaatcatcaaaagatccgttctctcgtccactactgt
cttgaccttcgctttcagagaccacgtgtagagcagattaagggcgccatgatgtctatt
gctttcaaagaaggccttaaggttccacccccagcaatgaatgaaattatcttggcagct
aatcaagacatcagacaagtattacataatctcagcatgtggtgtgcaaaaagcaaagtc
ttgacttacgacagtgtcaaagaagatgccagcaaagccaagaaggatataaagctgggc
ccctttgacgttgtcaggaaagtttttgctgctggggaggaaacttctcatatgtccctt
attgacaagtcagacctgttcttccatgattactctctagcgccgctctttgtccaggaa
aactacatacacgtgaagccagctgcagctgggggcaacatgaagaaacacctgatgttg
cttagcaaagcagctgacagtatatctgatggcgatttagttgaccggcagattcgcagc
agacaaaactggaatcttctgccgatacaggccatttattcaagtgtcctcccaggggag
ctgatgagaggttacatgaatcaattcccaaattttccaagttggttgggcaaattttca
tccaccggaaaacatgaccgtatccttcaagagttgtcaatgcatatgagcctcagaact
catgcaagcaagagagcagtaaacctggactatttgtcctacttacaaaatgccattgtg
agccccttggcttgcctggggacagaaggggtacaggatgctgtggctgtcatggattcc
tactatttgatgaaggaagatgttcaaaacctaacggaagtcaccagttggggaggcaag
cctagtgcattttctaaattagattccaaggttaaatcggctttcacacgctcctacaac
aaagaggttcatctcaccccctattcgctgcaaatagtgaagaagtctaaacgccaagcg
ggatcttcggtggatacggaactgaatgaagaagtggaggctgatgaagtccagtctgag
gaggagcaggagactattgaacacgacgcaatgattaagaagaagacaagttcttccaag
cagccaaaagtggaaagaactgatgatacaaaaaaagggaagaaagcaaagaagaaatct
aagtga
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