Sphaerodactylus townsendi (Townsend's least gecko): 125440960
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Entry
125440960 CDS
T08213
Symbol
COL1A2
Name
(RefSeq) collagen alpha-2(I) chain
KO
K06236
collagen type I alpha
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow04510
Focal adhesion
stow04512
ECM-receptor interaction
stow04518
Integrin signaling
stow04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125440960 (COL1A2)
04518 Integrin signaling
125440960 (COL1A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125440960 (COL1A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125440960 (COL1A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
stow00536
]
125440960 (COL1A2)
Glycosaminoglycan binding proteins [BR:
stow00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125440960 (COL1A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
125440960
NCBI-ProteinID:
XP_048367114
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All DBs
Position
LG11:complement(50366104..50442361)
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AA seq
1363 aa
AA seq
DB search
MLSFVDTRILLLLAVTSCLATSQYVNEATEGRKGPRGDKGPPGERGPQGIPGRDGEDGPR
GPPGPPGPPGLGGNFAAQYDQSKSADVGQGPMGLMGPRGPPGVSGPPGPAGPVGHPGEPG
EPGQTGPQGARGPTGPPGKPGDDGNPGRPGRPGERGAGGTQGARGFPGTPGLPGFKGIRG
HNGLDGRKGEPGAPGNKGEPGAAGENGTPGQAGARGLPGERGRVGAPGSVGARGSDGSVG
PAGPAGPIGGAGPSGFPGAPGPKGEIGSAGSPGPSGPAGPRGEIGLPGASGPVGPPGNPG
NPGINGAKGAAGLPGVAGAPGLPGGRGIPGPAGASGPSGARGLAGEPGPSGPKGETGNKG
EPGAAGPAGPAGPSGEEGKRGNNGESGSSGPPGPAGLRGVPGSRGLPGPDGRAGVMGAAG
NRGAAGPGGARGPSGDTGRPGEPGLMGARGLPGQSGSPGPAGKEGPLGLPGPDGRPGPVG
PAGPRGEPGIIGFPGPKGPNGEPGKPGDRGHVGLAGPRGAPGPDGNNGAQGPSGVIGNVG
SKGETGPAGAPGFQGLPGPSGPAGEPGKPGERGLHGEFGLPGPAGVRGERGPPGESGAVG
PSGSIGNRGPAGPPGPDGNKGEPGAAGAGGAPGPSGPSGIPGERGIAGGPGGKGEKGPTG
FRGEPGATGRDGARGPPGAVGAPGPAGAAGERGEAGPAGQAGPAGPRGISGERGETGPAG
PPGFAGPPGAAGQTGAKGERGQRGPKGDVGPQGAVGAAGNAGPAGPVGPSGPAGGRGDGG
PPGVTGFPGAAGRVGPPGPSGITGPPGPPGPSGKEGIRGPRGDSGPVGRAGEPGPVGPPG
FTGEKGPSGEGGAAGPPGSPGPQGLLGSVGNLGLPGSRGERGLPGVAGAVGEPGPVGVSG
PPGARGPSGPIGSPGVSGSPGEAGRDGNPGSDGPPGRDGAPGYKGERGGPGSSGPAGALG
APGPHGAVGPAGRPGNRGESGPVGQVGSVGPAGARGPAGPQGARGEKGLPGDKGPRGLPG
LKGHNGLQGLPGIAGHHGEQGSPGLPGPAGPRGPPGPHGPSGKDGRNGISGPVGPAGVRG
SQGSPGPSGPPGPPGHPGPPGVNGGGYEVGFDAEYFRADQPSLRPKDYEVDATLKTLNNQ
IETLLTPEGSKKNPARTCRDLRLSHPEWSSGFYWIDPNQGCIMDAIRVYCDFSTGETCIH
ANPESIPTKNWYTSKKPAEKKHIWFGEIINGGTQFEYNEEGVSTKDMATQLAFMRLLANH
ASQNITYHCKNSIAYMDAETGNLKKAVMLQGSNDVELRAEGSSRFTFNVLEDGCSTKTNE
WGKTIIEYRTNKPSRLPILDIAPLDIGGADQEFGVDIGPVCFK
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatacacggattttgttgctgctcgcagtaacttcatgcctagca
acaagtcaatatgtgaatgaggcaacggaaggacggaagggccccagaggagacaaaggg
ccaccgggagaaaggggtcctcaaggcataccaggtagagatggtgaagatggtccacga
ggccccccaggtccccctggtcctcccggtcttggaggaaactttgctgctcaatatgac
cagtctaaatcagctgacgttggccaaggaccaatgggacttatgggacccaggggccct
cctggagtatctggaccccctggtcccgcaggcccagtagggcatcctggtgaacctggt
gaacccggtcaaacaggtccacaaggtgctcgtggtccaactggtcctcctggaaagccc
ggagatgatggcaatcctggcagacctggcagacctggtgagagaggtgctggtggcact
cagggtgctcgtggctttcctggaacacctggtctccctggtttcaaaggaataagggga
cataatggtttggatgggcgcaaaggagaacctggtgctcctggtaacaagggtgaacct
ggtgctgctggagaaaatggtacccccggacaagctggtgctcgtggtctccccggtgaa
aggggaagagttggtgctcctggatcagttggtgctcgtggcagtgatggaagtgttggt
cctgctggccctgctggtcccattggtggtgctggaccttctggattccctggtgctcct
ggtcccaagggcgaaattggatctgcgggtagcccaggcccaagtggccctgctggtcca
cgtggtgaaattggtctgcctggcgcttctggtcctgttggccccccaggtaaccctggt
aaccctggcattaatggtgctaaaggtgcagctggtcttcccggtgtagctggtgctcct
ggcctgccaggtggccgtggtatccctggcccagctggcgcatctggaccttctggtgct
agaggacttgctggtgaacctggaccttctggacccaagggagaaaccggtaacaagggt
gaacctggtgctgctggcccagctggcccagctggtccaagtggtgaggaaggcaagaga
ggtaacaatggtgaatctggatcttctggtccacctggtccagcgggtttaagaggtgtc
cctggatctcgtggtctccctggacctgatggcagagctggtgttatgggtgctgctggt
aatcgtggtgctgctggccctggtggtgctcgaggccccagtggtgatacaggtcgccct
ggtgaacctggtctcatgggtgcaagaggtcttcctggtcagtctggaagcccaggtcct
gctggcaaagaaggtcctcttggtttacctggtcctgatggtcgacctggaccagttggt
ccagctggcccaagaggtgaacccggcatcataggattcccaggtccaaaaggtccaaat
ggtgaacctggcaagcctggtgacagaggccacgttggtcttgctggccctcggggtgct
cctggtcctgatggaaacaatggagcccaaggaccatctggtgtaattggtaatgttggc
tccaaaggtgaaactggtccagctggtgcccctggcttccaaggtctcccaggtccttca
ggtccagccggtgagcctggcaaaccaggagagagaggtcttcacggagaatttgggctc
cctggtcctgctggtgtgagaggggaacgaggccctccaggtgaaagtggtgctgttggt
ccatcaggttccattggaaaccgtggcccagctggtccaccaggccctgatggtaacaag
ggtgaacctggtgctgcaggtgctgggggtgccccaggcccatccggtcctagtggaatc
ccaggagaaagaggcattgctggtggtccaggaggcaaaggtgaaaagggcccaacggga
ttcagaggtgaacctggagcaacaggaagagatggtgcacgtggtcctcctggtgcagtc
ggtgccccaggtcctgctggagctgctggtgaaaggggtgaagctggtcccgctggtcaa
gccggccctgctggtcctcgtggaatatctggtgaacgtggtgagactggccctgctggt
cctcctggatttgctggccctcctggtgcagctggtcagactggtgctaaaggcgaaaga
ggccagagaggtcccaaaggtgatgtaggccctcagggtgccgtcggtgctgctggtaat
gctggccctgctggtccagtcggtccttcaggtcctgctggaggtcgtggagatggtggt
ccacctggtgttactggttttcctggtgccgctggtagagttggacctccaggcccttca
ggtatcactggcccacctggtcctcctggtccatctggcaaggaaggtataagaggccca
cgtggtgactctggaccagttggccgtgctggagaacctggccctgttggacctcctggt
ttcactggagagaaaggcccaagtggagaaggtggcgctgctggtcctcctggttctcca
ggtcctcagggtcttctcggatctgttggtaatcttggtttgcccggctctagaggagaa
cgtggtctcccaggtgtcgctggagcagtgggtgaacctggacctgttggagtttctggt
ccccctggtgcccgtggcccctctggtcccattggttccccaggtgtgagtggtagtcct
ggtgaagctggacgtgatggaaatcctggtagcgatggacctccaggtcgtgacggagct
cctggttacaagggtgaacgtggtggtcctggaagcagcgggcctgctggagctcttggc
gctcctgggccccatggtgctgtcggtcctgctggcagacctggaaaccgtggtgaaagc
ggccctgtcggtcaggttggttctgttggcccagctggagcaagaggacctgctggccca
caaggtgcacggggtgagaaaggccttcctggtgacaagggacccaggggcttgcctgga
cttaaaggacacaacggactccaggggctgcccggcattgctggtcatcatggagaacaa
ggttcccctggtcttcctggtcctgctggcccaaggggtcctcctggtcctcacggacct
tctggaaaagatggtcgcaatggaatttccggacctgttggacctgctggtgtgcgtggt
tctcaaggtagccctggaccttctggtccaccaggtcctcctggtcatcctggcccacct
ggtgtcaatggtggtggatatgaagttggctttgatgcagagtatttccgggctgatcaa
ccttccctcagacctaaggactatgaagttgatgcaactctgaaaacactgaacaaccaa
attgagactctccttacccctgaaggctcaaaaaaaaatccagctcgcacctgccgcgac
ttaagactcagccatccagaatggtccagtggcttctactggattgatcctaatcaaggc
tgcatcatggatgccattagagtgtactgtgatttctctactggtgagacctgtatccat
gctaatccagaaagcatcccaactaagaactggtacacaagcaaaaaacctgcagaaaag
aagcacatatggtttggagaaattatcaatggcggtactcagtttgaatacaatgaggaa
ggtgtgagtaccaaggacatggccacccaacttgctttcatgcggctgctggctaatcac
gcctcccagaatatcacttaccactgcaagaacagcattgcctacatggatgcagaaaca
ggaaaccttaagaaggcagtgatgttgcagggatccaacgatgtcgaactacgagctgaa
ggcagcagcagattcactttcaacgttcttgaggacggctgctctacaaagaccaacgaa
tggggcaaaacaattattgaatacagaacaaataagccatctcgcttgcccatcctggac
attgcacctttggacattggtggtgctgaccaagaattcggtgtggacattggcccagtc
tgtttcaaatga
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