Sphaerodactylus townsendi (Townsend's least gecko): 125440988
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Entry
125440988 CDS
T08213
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125440988 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stow03032
]
125440988 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
stow03400
]
125440988 (TOPBP1)
DNA replication proteins [BR:
stow03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
125440988 (TOPBP1)
DNA repair and recombination proteins [BR:
stow03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
125440988 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
125440988
NCBI-ProteinID:
XP_048367183
LinkDB
All DBs
Position
LG11:28205801..28237015
Genome browser
AA seq
1502 aa
AA seq
DB search
MMNSSKEYFVKFLKSEKNSEFFLQALELLKEFKSDECLQILEKDAALKIQENDKSLYICD
QFSGIVFNHLQKLGCRIVGPQVVIYCMQNQLCVPRADYPVYNMTMADVTVSCTNLQKEAR
EEVHKYVQMMGGRIYRELNVSVTHLIAGEVGSKKYFVAANLKKPILLPSWVTALWEKSQD
CMIRYTDINMGNFLCPLFRGCTVCVTGLSSQDRKEIQRLTVENGGQYSGELKMNECTHLI
VQDPKGPKYECARRWNVYCISIQWFFDSLEKGFCQDQSNYTVESASKQENAPSTSTPTSE
SSQPHSRTLSDVSHISNINFSSVNETGCSSAVNIKLDVPLDDLINLDISSLQAPEDLLDG
CRIYLSGFSGRKLDKMRRLINSGGGVRFNHLNEDVTHVIVGDSDDELKQFLKKTSQRPYI
VTAKWLLECFRKGYLVTEEQYIPATYQPVDSSILEHDLMKSVLPKQNNFSKKEAVNITAT
HKADEDLLSQYVPNNSTAVDVGDYSDTNHPTMQRKEFPASISSLAETSTVVEGTLFCGKK
FALLGFDKEDESCIRSLVEEYAGRVLPQQSKAIADYAVVPLLGCNVKSTVGEVVTNTWLV
MCVEQQVLLDPQSSPLFTPVFVKEGHNPLEKCVLSFSQFSGTERDSLIYLANLLGARVQE
FFVRKANPRKGMFVSTHLVLKEPDGSKYEAAKKWNLPAVTLAWLLESARTGKKAEENKFL
IDNAVAEVIEQTFKNDPALAEIGAAPSNTPDRPHNIFESGKGTAVTPLDMNRFQSKAFQT
VISHHIGKKASPPLEGKPVQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALAALETPEGSN
QRNRKLSTPLSEVIGRNLKLALANSTRQTAVLSASPQLKAAPQPVEEDSTDPLTPLTGVV
VCVSKKLSKGQSELNAITASLGGDYRWRFDETVTHFIYQGKQNDSNREYKSVKERGIHIV
SDLWLLECAKACKRIPESLYPHTYNPKMSLDISGVQDDRVSTRLGSARKSGKEDESISLD
EINLEDATTDQVNEAVAIGKEEKASKGVLTQTLEMRENFQKQLQEIMTATSLEKLQGQRT
SLSRNGFDNSPTTPNGPRSLRNGRSRVLEALRQSHQVATDVNTEPSQNEQIIWDDPTARE
ERARLASNLQWPGNPSQHFEQTGDPALRKSVTDSEIAEMDVNNPGVTTIAEVPEPAVFRD
PETPVKEDNPILTPLAPAIAFPLANPPVAPQPKEKVIKTDRKSNGEPEYKFQLSSLTPQE
RIDYCYLIEELGGVVLEKQCFDPRCTHTVVGNPLRNEKFLASMAAGKWVLHRSYLEACRT
AQRFVEEEDYEWGSNTVLSVIPRMSVIQKKLAVAAMRWRKAIQRRRKESGITEGAFSGWK
IILNVDPVKEAGFKRLLESGGAKVLPGYSSALFREATHIFADFNKLKPEDIRVNVRGAAA
QGVNCLKPEYIADYLIEEPPPPMQCYYLPEAIACLQNGRERGLSQKRKAPEEANTVKKSR
MY
NT seq
4509 nt
NT seq
+upstream
nt +downstream
nt
atgatgaatagcagcaaggaatattttgtgaaatttttaaagtctgaaaaaaattcagaa
tttttccttcaggccctcgagttgctaaaagaatttaaatctgatgaatgtctgcagatt
cttgaaaaggatgctgcgctgaaaatacaagagaatgacaaatccctttatatatgtgat
cagttcagtggcattgtttttaaccaccttcaaaagcttggttgtaggattgttggacca
caggtagtaatttactgtatgcaaaaccaactatgtgttccgagagcggattacccagtt
tataacatgacaatggctgatgtgacggtgtcctgtacaaatcttcaaaaagaagcacga
gaggaggtccacaaatatgtacagatgatgggtggccgtatttacagagaacttaatgtt
tcagtaacacatcttatagctggagaagtcggaagcaaaaaatacttcgttgctgctaat
ttaaagaaacccattttacttccctcttgggtgacagcattgtgggagaaatcacaagac
tgcatgattaggtacacagacataaacatgggaaacttcttatgtcctttgtttcgtggt
tgcacagtctgtgtaacaggcttgagcagtcaggaccgaaaagagatccagcgtctgact
gttgagaatggtggccagtactcaggggagctcaagatgaatgaatgtacccatcttatt
gttcaagaccccaaaggcccaaaatatgagtgtgcaagaaggtggaatgtctactgtatt
tctatccagtggttctttgacagtcttgagaagggattttgccaggatcaatcaaactat
acagtagaatctgcttcaaagcaagagaatgcccccagcacatcaactcctaccagtgaa
tccagccagcctcatagtcggaccctctcagacgtcagccatatttcaaatataaatttc
agttcagttaatgaaactggatgtagctcggctgtaaatatcaaactggatgtgcctctt
gacgatctgatcaacttggacattagttctttgcaggctcccgaagatttactagacggc
tgtcgcatttacctctctggtttcagtggccggaagttagataagatgagaaggctgatt
aattctggaggtggggttcgttttaatcatctaaatgaggatgtgacgcacgttattgtt
ggcgattctgatgatgaactgaaacaatttttgaagaagacgtcacagagaccatatatt
gtgacagcaaaatggcttctggaatgctttagaaaaggttatttagtaactgaggaacag
tatatccctgcaacctaccagccagtggacagttccattttggaacacgacttaatgaag
tcagtccttcctaaacaaaataacttttcaaagaaagaagctgtgaacattacagccact
cacaaagcagatgaagaccttctgtctcaatatgtccctaataattctactgcagttgat
gttggggactacagtgataccaatcaccccaccatgcaacgaaaagagttccctgccagt
atcagttccttggcagagacttctacggttgttgaaggaaccttgttctgtggcaagaag
tttgcgcttctgggctttgacaaagaagatgaatcctgcataagaagtctggttgaagag
tatgcagggcgtgttctacctcaacaaagtaaagcaattgctgactatgctgtggttcca
ctattggggtgcaacgtgaagtcaactgttggagaggtggttacaaatacatggctggtg
atgtgtgtcgaacagcaagtccttctagatccacagtcaagtccacttttcacaccagtg
tttgtgaaggaaggacacaaccccttggaaaaatgtgttttatcattcagccaattcagt
gggacagagagagactctttaatatacctggcaaatctgcttggggcaagagttcaggaa
ttctttgtgagaaaggccaaccccaggaaaggaatgtttgtcagcacccatctggtgctg
aaagaaccagatggttctaagtatgaggctgcaaaaaaatggaatctcccagctgttact
ctggcttggctgctggagtctgcgaggacggggaaaaaggcagaggaaaacaagttcttg
attgacaatgcagtcgctgaagtcatagaacagaccttcaaaaatgatccagccctggcg
gaaataggtgcagcaccttcaaatacacctgaccgaccccacaatatctttgaaagtggg
aagggcacagctgtgacacctcttgatatgaaccgattccagagtaaagctttccagact
gttatttcccaccatattggtaaaaaggcaagccctccactagaagggaagccagtacag
aaagaaccatctttgcatttggataccccatccaaattcttgtcaaaagacaagctcttc
aagccttcttttgatgtcaaggatgctttagcagctttggaaactccagagggttctaac
cagcgcaacagaaaactgagtactccactttctgaagtcattggcaggaacttaaaactg
gctttggccaacagcacccggcaaacggctgtgctcagtgccagtcctcagttgaaggct
gctccccaaccagtggaggaagactccacagaccctctaactcctctaactggcgttgtc
gtatgtgtgagtaagaagctcagtaaagggcagagtgagctgaatgcgattactgcctct
cttggaggggattacaggtggaggtttgatgaaactgtgactcatttcatctaccaagga
aagcaaaatgatagcaaccgtgaatacaaatctgttaaagaaagaggcatacacatagtc
tcagatctctggcttttagagtgtgcgaaagcatgtaaacggatccctgaatctctctat
ccacatacatacaatcccaaaatgagtttggatattagcggtgtacaagatgacagagtc
tcaactaggcttggctcagctagaaaatctggaaaggaagatgagagtatttcattagat
gagatcaatctcgaagatgcgacgacagatcaagtgaatgaggcagttgctattggaaaa
gaggagaaagcatcaaaaggagttttaacacagacattggaaatgagagagaatttccaa
aagcagctacaagaaatcatgactgctacttctttagaaaaactgcaaggacaacggacc
tctttgtccagaaatggttttgacaactctccgacaactccaaacggtcctcgttctttg
cgtaacggccgaagcagagtcttggaagcattaagacagtcccatcaagtagcaacggat
gtcaacacagagccatctcagaatgaacaaattatttgggatgaccctactgcaagagaa
gagagagcaagacttgccagcaaccttcagtggcctgggaacccatcccagcattttgaa
caaacaggcgatcccgcactcaggaaatctgtcactgattcagaaattgcagaaatggat
gtcaacaatcctggagtaactactatagctgaggtcccagaacctgcagtatttagagat
ccagagacccctgtcaaagaagataatcccatcctgacaccactggctcctgccattgcc
tttccacttgcaaacccccctgtggctccacagcccaaagaaaaggttattaaaactgac
cggaagtccaatggtgaaccagaatacaaattccagctgtcttcccttactcctcaagag
cgaattgattattgctatttgattgaagaactaggtggggtagtgcttgagaaacagtgc
tttgaccctcgctgtacacacacagttgtgggaaaccctcttcgcaatgagaaattcttg
gcatcaatggcagctggaaagtgggtgctccatcgatcctacctggaagcatgtaggaca
gcacagcgttttgtagaggaggaagattatgaatggggaagtaacacggtactaagtgtt
attcctagaatgagcgtaatacagaaaaaattagcagtggcagccatgagatggaggaaa
gcaatacaaaggaggagaaaggagagcggcatcactgagggagcatttagtggttggaag
attattttgaatgttgacccagttaaggaagcaggcttcaagcgtctcctggaatcagga
ggagcaaaggtgttgcctggctattcttctgctctctttagagaagccactcacattttt
gctgattttaataaactgaagccagaagatataagagtcaatgtaagaggagccgcagct
caaggagtgaactgcctgaagcctgaatatattgctgattaccttatagaggaaccaccg
cctccaatgcaatgctattatttgcccgaagccatagcctgtcttcagaatggcagagaa
cgtgggttatctcaaaaacgaaaagctcctgaagaagcaaacacagtcaagaaatccaga
atgtattaa
DBGET
integrated database retrieval system
