Sphaerodactylus townsendi (Townsend's least gecko): 125441550
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Entry
125441550 CDS
T08213
Symbol
SETX
Name
(RefSeq) LOW QUALITY PROTEIN: probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stow03021
]
125441550 (SETX)
Enzymes [BR:
stow01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125441550 (SETX)
5.6.2.5 RNA 5'-3' helicase
125441550 (SETX)
Transcription machinery [BR:
stow03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125441550 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
AAA_30
AAA_22
AAA_16
UvrD-helicase
nSTAND3
DUF4164
AAA_25
Motif
Other DBs
NCBI-GeneID:
125441550
NCBI-ProteinID:
XP_048368114
LinkDB
All DBs
Position
LG12:complement(48652441..48735694)
Genome browser
AA seq
2376 aa
AA seq
DB search
MSTCYWCTPGGPNAVSFLQSYASKALSPEELAAANDDLRYCVECVDEYHKARDKVPSLQK
VLWYLETTRLIDHLEKTMRKRNEPPDLYIVEGDKETPCCGYTSSDLERDLSIPLLEILKY
PYLLLNERLSDLCVEALFEVEKINYSYEVTGKHPGIYLLVVHPNEHIRRWAIQTATNLGQ
VDRDDYYDIQEVFTCLLKVIELGLFENPSIYNSAVLEEGKLILLPPHLYDTSDYKSYWLG
ICMLLSVLEEQAMDSLLLGPEKQNDFMHSILSTMEKHTEDEKQDPFWPALQCFMVILNRL
GAKVWGQLMDPIQAFQTIINSPSYKNKIKRIRQSCRRTKTEPFSDYGDDMITSSQIVYNY
CTEKPQKEAGWKAAAVWTDYLRNLHEDMHALASMLQSDSDQEEQWHSSTFLWFIPFVHSL
MDLSEGIPYIMKVICHLCFEINRVFGEAVQYCDKASERFILILVSVVQLHLSKGCLHLLW
VSSQFWVEAVVKCAKLPSTALTPGGEGALRSFPRTGGAISSQGPCSVQLICMRLIRSLLK
EAYQQGQQGSSKVFLDKLNLLLRNDNVSQGWQLSADDTNELQACLLRFIQSIDGKRLTAA
SHGENAAACISPPLFSVKQEKDVWGDRHPVNASSEQTAHLPLRANEVCQQGLSPRRASSL
REERREVSCGDQTLRKISECPVPLIKKEPEERSVQEGDNLGCSKLANGPKNVLNKEYSPQ
DPGKERESNSTYKSNFEQGLQNPGTLDSNGKEIRSRTSKCLPAPEKVCDGRNGHSGSEVS
VALHNLANVKILLEKSSFTSKLKQFINNNKRGAPMFDSITEKQQSVKDESRGQEERTGEM
SGSSSMRKPELSSGDASEDKPLCPPKKSINSVAECSSVSKAEFDLEDSSSEDENIPYSVI
RKELIKTKLAAVTTPLSDSQVDRDLSRLSLAAYAKGINFPSDSSQESPVHEQSCIRRKVG
GAVRSCSDRQSNQSSSGGDEPGDPIIVISDSSSDEDKKKGIGASGQERENIDTSLQKQSG
GAVEESGGQDFPPASNSPLLVEECESQCFEFETEDEIYSAWQDSQWDEEAADLPEEQGLP
GKPGNSGIQCDLETGKQTNDQDYDTDYLGEEVTEKAAEAFELQVNSRKHGGAEKLDKEAA
VSKENRESFPDSDGECSRHENQRLLSPSTSACSSVSRSADEKSKTRANKHPAKPQLLNMT
KKRAEKGNLKPNTHHKKSPQIKTFRSAPAVVPPKKVHEYPRPTLTVEKLGLKKAPRRAAE
LSQRSLDCLAELRSYGKAAGELGLAHQRKSKLIPARSLAVKNRKMLACQDLQFYRQSRPN
VTERGQRTHGRSPENQPPKTTKKAGSKQTVPRVASGAADEIQKERAERFSNSADGGSKQF
RQHSLERAEVQATSVSPGNKEFSLTGRSANIDTNVEENAAVVTPFLGSAETEGAKTDPVS
PSSPFATPWDKAVSKETESKLNEDGGEDDDLFLTQRVPEDMEICSQVENGIVVAENVPET
PLQGRFVNTDICRHAGCAEKVNKAGTYCLQHAALDHVFVKPLPPKAPTAKIFSLSSSRSA
SLTKDLENTHKPSLPLKSKPTLKMDGIKHLSFMNVLGPRNSNNHPQLQHVPSNHAVEIAK
PWPTYGICAGQEKRLRFPQGNHVNTQKRDYSVFNKEVLKWTYEMFARFSQFGVPESLLQS
IVAAVPARFRDYDDYFDTFFPLMMLNAFETVAQEWLDNQKLKPAKEFLLKLSNLSADSSV
ADFTAEIQESDLESQLQPKESDLVFLMVSKKQNPYSEESGDRNFELASAAGKLSADFTYL
FPGTISPLEATERKEQRVVCRLSIQTQGNSSFIGKEFRCVVVSSLVTTQRRFKALLLLSR
SPLAVPIYRASYASFCPQGIHTESGNAVSDIADYNEDQKRAIEAAYAMVMKPSVPQICLI
YGPPGTGKSKTITGLLYRILTEKPGKGIPVHSLNAKIKHNRVLVCAPSNAAVDDLMKKII
LFFKEKCQDRANPLGNCGDISLVRLGQEKSISKEVRKFSLNDQIRNRMNRGKFGNDQDLH
RRKEELDQQLDMLSRQRATERKTQEKRQQLDDEICRLSKERERLAHQLKEVRGWSQGWRI
ILSLRHLLCGSAVASCLESAFERSCSSAASLWGRSGGQGQLVMSTLCAEAETTSLDPRAG
QACEVETLIPLIHGCRKLVLVGDPKQLPPTVISIKAQDYGYDQSLMGRLYTHLTEQVQQN
VIKDLPVLQLTMQYRMHPDICLFPSNYIYGRALKTDKETEANRCSSKWPFQSYLLFDVRD
GQEERESDSFANIQEVKLVIELMKLIKQKKKQMDFHHIGIITPYNAQKRRILRELNKTFG
ENRASEVDTVDGFQGREKDCIIVTCVRANSTHGSIG
NT seq
7131 nt
NT seq
+upstream
nt +downstream
nt
atgagtacgtgttattggtgtacccctggtggtcccaatgctgtcagttttctacaaagc
tatgcttccaaggcgttgtcccccgaggaacttgctgcagccaacgatgacctccgctac
tgtgtggagtgcgtggatgagtaccacaaagcaagggataaggtaccatcactgcaaaag
gtcctgtggtatttggaaacgactcgccttattgaccacttggagaaaaccatgcgcaag
agaaacgaaccccctgatttatacattgtggagggagacaaggaaacaccgtgctgcggt
tacaccagctctgacctggagagagacctcagtatccctttgcttgaaatactgaagtac
ccctacctgctgcttaacgagcgtctcagcgacttgtgtgttgaggctcttttcgaagtg
gagaaaatcaactacagctatgaggttactggcaaacatccagggatttatctgcttgtg
gttcaccctaacgagcacatccggcgatgggccatccaaacagccacgaatctggggcag
gtggacagggacgactactacgacatacaggaagtgttcacttgcctgctcaaagtgatt
gagttgggcttgtttgaaaatcccagtatttataattctgcggtattagaggagggaaaa
cttattctgttgcccccccatctctatgataccagcgactacaaaagctactggctgggc
atctgcatgttgctttcggtattggaagaacaggcgatggattccctgttacttggccca
gaaaagcagaatgacttcatgcattccatactgtccacaatggagaaacacacggaggat
gagaagcaggaccctttctggccagcactgcagtgtttcatggtgattttgaatcggctc
ggggccaaagtgtggggtcagctgatggacccaatccaggcatttcaaaccattatcaac
agtccaagttacaagaacaaaatcaagcgcattcgtcagagttgcaggaggactaaaact
gagccattctcggactatggagatgatatgattacctccagccagattgtgtataactat
tgcacagaaaaaccccaaaaggaagctgggtggaaggctgcagctgtttggaccgactac
ttgcgcaacttgcacgaggacatgcacgctctggccagcatgcttcagtccgactccgat
caagaggagcagtggcacagcagcacgttcctgtggttcatccctttcgtccattccctc
atggacctgagcgaaggaatcccctacatcatgaaggtcatctgccacctgtgtttcgaa
atcaaccgggtcttcggtgaagccgtccagtattgcgacaaggcgtccgaacgcttcatc
ctgatcctggtttctgtggtgcagctccacttgtcaaaagggtgcctgcacttgttgtgg
gtcagctcgcagttctgggtggaggccgtggtgaaatgtgctaaacttcccagtacagcc
cttacacccggtggcgagggggctctccgaagcttcccgaggaccggaggggcgatctcg
tcgcagggaccgtgctccgtccagctcatctgcatgaggctgatcaggagccttctgaaa
gaggcctaccagcaggggcaacagggcagcagcaaagtcttcctcgacaagctcaattta
cttttgcgcaacgacaacgtctctcagggctggcagctgagcgccgacgacaccaatgaa
ttgcaagcgtgcctcctgaggttcattcagagtatcgatggcaaacggttgactgccgcc
tcccacggggagaatgctgcagcctgtatctccccgcctcttttttcagtaaagcaagaa
aaagatgtgtggggcgacaggcatccagtgaacgcatcctccgagcagaccgctcatctg
ccgttaagggcgaatgaagtctgccagcaaggcctgtcccccaggagagcctctagtctg
cgggaggaacgcagggaagtctcttgcggagaccagactctgcggaagatttcagaatgc
cctgtgcccctcatcaagaaagagccagaagagagatctgtacaggaaggggataacttg
ggctgctccaagttagcaaatggacccaagaatgtcctgaataaagaatacagtccccaa
gacccggggaaggagagggagagcaattccacatacaaaagtaactttgagcaaggcctc
cagaatccagggacccttgatagtaacggaaaggagataaggtctagaacttccaaatgt
ttgcctgctcctgaaaaggtttgcgatggcaggaatggccacagtggctcagaggtcagc
gtggccctgcataatcttgcaaacgtcaaaatcctattggagaagtccagctttacctct
aaattaaagcagttcatcaacaataataagagaggagctcccatgtttgactcaatcaca
gaaaagcagcagtccgtcaaagacgagagtagaggtcaggaggagcggacaggtgaaatg
agtggctcgtcaagcatgcgcaagccggagttgagctcaggtgatgcttctgaagacaag
ccgctctgcccccccaagaaatccataaacagtgtggcagaatgtagcagtgtttcaaaa
gcagagtttgatttggaagacagtagcagcgaagatgaaaacattccatattcagtgatc
aggaaggagctgataaaaactaaattggctgctgtgaccaccccgctctcggactctcag
gttgatagagacctcagtagactgtccctagcagcctatgccaaaggaatcaattttccc
agtgattcgagccaagaaagccccgtgcatgagcagagctgcattcggaggaaagttgga
ggtgctgttagatcgtgttccgacaggcagagcaaccagtcgtcatccggaggtgatgaa
ccgggcgatccaatcattgttatttctgattcttcttcagatgaggataaaaagaaaggg
attggggcaagtgggcaagagagagagaacatagacacaagtcttcagaagcagtctggt
ggtgcggtggaagaatctggaggtcaggatttcccccctgcctctaattcacctctcctg
gttgaagaatgtgaatcgcagtgttttgagtttgaaacggaggatgagatctactcagcc
tggcaagacagccagtgggatgaggaggcggcagacctcccagaggaacagggcctacca
ggaaaaccaggaaacagcggtatacagtgtgacttggagactggaaagcaaacaaacgac
caagattatgacaccgactatcttggggaagaggtcactgaaaaagcggcagaggctttt
gagctgcaggtaaactcgaggaaacacggcggagctgaaaagctcgataaggaagcagct
gtcagcaaagagaacagagagtcttttccagattctgatggagaatgttccaggcacgaa
aatcaacgtttgctcagcccatcaacctccgcttgttcctcagtatcaagatccgctgat
gaaaaatcaaaaacaagggcaaataaacatccagcaaaaccccaactgcttaatatgact
aagaagagagctgagaaaggaaatctcaaaccaaatactcaccacaaaaaatcgccacag
atcaaaactttcaggtctgcccccgctgtggtcccgccgaagaaagttcatgagtatcct
cggccgacgttgactgtggaaaaactcgggttgaaaaaagcaccgcgtagggctgctgag
ctctctcagcgttctctagactgtctcgccgaattgcgcagctacggcaaagccgctggg
gagctgggtctcgcgcatcaacgcaagtccaagctaattccagctcgcagtctggccgtt
aaaaatagaaaaatgttagcttgccaagatctgcagttctaccgacaatcaagaccaaac
gtcacagagagaggtcagcggactcatggaagaagtcctgagaatcagccgcccaaaaca
accaaaaaggcaggttccaagcagactgttccacgggttgcaagcggggctgcagatgaa
attcagaaggagagagctgagcgcttcagtaactccgcagacggcggaagcaagcagttt
cgtcagcattcgctggagagagcggaagttcaggccacctctgtctctccagggaacaag
gagttctcattgactggtcggtccgccaatattgatacgaacgttgaagaaaacgcagca
gttgtcacgccttttctaggctccgctgaaacggaaggtgctaaaacggaccccgtgagc
ccttcgtctcccttcgctaccccttgggataaagcggtttcaaaagagacggaatctaaa
ttaaacgaggacggcggagaagatgatgacctgtttttaacacagagagtcccagaggat
atggagatctgttcgcaagtggaaaatggcatagtcgtggcggaaaatgttcctgagacc
cccttgcagggccgctttgtaaataccgacatatgcaggcatgctgggtgtgctgagaaa
gttaataaagcagggacgtactgcttacagcatgccgctctggaccacgtcttcgtcaag
cctcttccgcccaaagctccgacggcaaaaattttcagcctcagttcttcgaggagtgcc
agcctcaccaaggacctggagaacactcataagccctctctgcctttgaagagtaaaccg
actttaaagatggacgggatcaagcacttgtcgttcatgaacgttctggggcctcggaat
tcaaacaaccatcctcaattacagcacgtcccaagtaaccatgctgtggaaattgcgaag
ccgtggccaacctatgggatttgcgctgggcaagagaagcgcctgcgcttcccgcaagga
aaccatgttaacacccagaagagagattatagcgttttcaacaaagaggtcctaaagtgg
acctatgagatgtttgcaagattcagccagtttggggtgccggaaagcctccttcagtca
attgtggccgcagttccagccagatttcgggactacgacgactattttgatacgtttttt
cccttaatgatgctcaatgcttttgaaacggtagcacaagagtggctagacaatcagaaa
ctgaagccggcaaaggaattcctcttgaaattatcgaacctcagtgctgactcaagcgta
gcagattttacagctgagattcaggaaagcgacctggagagccagctgcaacccaaggag
agcgacttggtcttcttaatggtctccaaaaaacaaaacccttacagtgaagaaagtgga
gaccggaattttgaattagcatctgcggccgggaagcttagtgcggattttacatatctt
ttcccaggtaccatcagtccacttgaagctacagagaggaaagagcagcgggtcgtctgc
cgcttgtccatccagacacaaggcaactcatccttcatcggtaaggaattcagatgcgtg
gtggtcagctctctggtgacaacgcagcgcagattcaaggcgctacttctgctgagccgg
agccctctggccgtgcccatctacagggcgagttatgccagcttctgcccccagggcata
cacacggagtctgggaatgcggtttccgacatcgcggattacaacgaagatcagaagagg
gccattgaggcagcttatgccatggtgatgaagccgtcggtcccccagatttgcctgatc
tatggtccgcctgggacagggaagtcgaaaacgatcaccggccttctgtatcgcatcctg
actgagaaacctggaaagggaattcctgtgcacagcctgaatgccaaaattaaacacaat
cgagtgctggtttgtgcgccgtccaacgctgctgtggatgatctgatgaaaaaaataata
cttttcttcaaggagaagtgccaagacagagcaaatcctttaggaaactgtggtgatatc
agtttggtgagactgggacaagagaagtccatcagcaaagaggtccgaaagttcagtctg
aatgaccaaatcagaaaccgaatgaatagagggaagtttggcaatgaccaagatctgcac
cggaggaaggaagaattggaccaacagctggacatgctttctcgtcagcgagcgacggag
aggaagactcaggagaagaggcaacaactagacgatgagatctgcagactttcaaaggag
agggagcggctggctcatcaactgaaggaggtccggggatggtctcagggctggcgaatc
atcctgagtctccgtcatctgctatgcggctcagcagtggcgagttgcctggaatcggca
ttcgaacggtcctgcagctcagctgcgtcattgtggggcagaagtggcgggcagggacag
ttggtgatgtctacgttatgtgcagaagcagagacaacttccttggatccaagagcgggg
caggcctgtgaggttgaaactctcattccgcttattcatggctgccggaagctcgtcctg
gttggtgatcccaagcagctccctccgactgtaatctccattaaagctcaggattacggc
tacgatcagtctctgatgggccgcctgtacacacacctgacggagcaagtgcagcagaac
gtgatcaaggacctcccagtgctgcagctgaccatgcagtatcggatgcacccggacatc
tgcctctttccctccaactacatctacggccgggccctgaaaaccgacaaggaaaccgaa
gcgaatcgatgctcttcgaaatggcccttccagtcgtatttgttgtttgatgtgcgagac
ggccaggaggaacgggagagtgactcctttgcaaatatccaagaagtgaagctggtgatt
gaattaatgaagttgattaagcagaagaagaagcaaatggacttccaccacattggaatc
atcaccccgtacaacgcacagaaaaggagaatcctgagagagctgaataaaacctttgga
gaaaacagagccagcgaagtggacacagtggatgggttccagggccgtgagaaggactgc
atcatcgtgacctgcgtccgagcaaacagcacccacggctccattgggtaa
DBGET
integrated database retrieval system
