Sphaerodactylus townsendi (Townsend's least gecko): 125441646
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Entry
125441646 CDS
T08213
Symbol
DDX6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125441646 (DDX6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stow03019
]
125441646 (DDX6)
03036 Chromosome and associated proteins [BR:
stow03036
]
125441646 (DDX6)
Enzymes [BR:
stow01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125441646 (DDX6)
Messenger RNA biogenesis [BR:
stow03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
125441646 (DDX6)
mRNA degradation factors
5'-3' decay
Decapping complex
125441646 (DDX6)
Chromosome and associated proteins [BR:
stow03036
]
Eukaryotic type
Gene silencing
piRNA pathway
125441646 (DDX6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
125441646
NCBI-ProteinID:
XP_048368311
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All DBs
Position
LG12:25607102..25627032
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AA seq
483 aa
AA seq
DB search
MSTARTENPVIMGLSSQNGQLRGPVKPSSGPGGGGTQAQQQINQLKHPNTINNGTQQQAQ
GIPSTLKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHV
QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEE
EKP
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagtacggccagaacagagaaccctgttataatgggtctctccagtcaaaatggacag
ttgaggggccctgtaaaacccagcagtggtccaggaggtggaggaacacaggcacagcag
cagataaaccagctgaaacatcccaacacaatcaacaatggcactcagcagcaagcccag
ggtataccctctactctcaaacctggcgatgactggaagaagactttgaaactccctcca
aaagatctgcggatcaaaacttcggatgtgacttccactaaaggaaatgagtttgaagat
tactgtctgaaacgggagctgctgatgggaatttttgaaatgggctgggaaaagccatct
cctattcaggaggagagcattcctattgctctgtctgggagggacatcttggcaagagca
aagaatggaaccggcaagagtggtgcctacctcattcccttacttgaacgacttgactta
aagaaggacaacatacaggcgatggtgatagttcccacgcgagaactggcccttcaggtc
agtcagatttgcatccaggtcagcaaacacatgggaggggccaaagtgatggcaaccact
ggaggaaccaacctgcgtgacgacatcatgaggcttgatgatacagtgcatgtggtgata
gcaacaccagggaggattctggaccttatcaagaaaggagtagccaaagtggatcatgtc
cagatgattgttctcgatgaggcagacaagttgttgtcccaagattttgttcaaataatg
gaggacatcattctcacgttacctaagaacaggcagatcttgctctactcggccactttc
cctctaagtgtgcagaagtttatgaattcccacttgcagaaaccctatgagattaacttg
atggaggaactgacgttgaagggagttacccagtactatgcctacgtgactgagcgccag
aaggttcattgcctcaacacattattctccaggctccaaattaaccaatcgatcattttc
tgcaactcctcccaacgggttgaactgctagccaagaaaatctcccagctggggtattcg
tgtttctacattcatgcaaagatgaggcaggagcaccgcaatcgagtgttccacgatttt
cggaatggcttatgccgcaatctcgtttgcactgatctgtttacccgaggtattgatatc
caagctgtgaatgtggtgataaactttgatttcccaaaactggcagagacgtatctccac
cgtattggcaggtcaggtcggtttggccaccttggcttggccatcaacttgattacctat
gatgatcgattcaacctgaaaagtattgaagagcagctggggacggaaatcaagcccatc
cccagtaacattgacaagagcctgtatgtggcagaataccacagtgagcccgtagaagag
gagaaaccttaa
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