Sphaerodactylus townsendi (Townsend's least gecko): 125442123
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Entry
125442123 CDS
T08213
Symbol
COPA
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
stow04131
]
125442123 (COPA)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
stow04147
]
125442123 (COPA)
Membrane trafficking [BR:
stow04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
125442123 (COPA)
Exosome [BR:
stow04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125442123 (COPA)
Exosomal proteins of bladder cancer cells
125442123 (COPA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR75_1st
WD40_RFWD3
WD40_MABP1-WDR62_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
125442123
NCBI-ProteinID:
XP_048369235
LinkDB
All DBs
Position
LG01:22305568..22352978
Genome browser
AA seq
1224 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESD
VRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAH
PNLNLFAAGHDGGMIVYKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDVAVMQLRSG
SKFPVFNMSYNPAENTVLLCTRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSILIKNLKNEITKKVQVPNCDEIFYAGTGNLLLRDADSITLFDVQQK
RTLSSVKISKVKYVIWSADMSHVALLAKHAIMICNRKLDSLCNIHENIRVKSGAWDESGV
FIYTTSNHIKYAVTTGDHGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLTIDPTEFKFK
LALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEI
ALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMM
KIAEIRKDMSGHYQNALYLGDVAERVRILKNCGQKSLAYLTAATHGLEEEAESLKETFDP
EKETIPDIDPHAKLLQPPAPIMPLDTNWPLLTVSKGFFEGTIASKGKGGALAADIDIDTV
GTEGWGEDAELQLDEDGFVDAGEGFGDEATAKGQEEGGGWEVEEDLDLPPELDVPAGPAG
GSENGFFVPPTKGTSPAQVWCNNSQLPVDHILAGSFETAMRLLHDQVGVTTFAPYKQLFL
QTYARGRTTYQALPSLPSMYGYPHRNWKDAGLKNALPAVGLKLNDLIQRLQLCYQLTTAG
KFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLIAICREYIVGLSMEIERKKLPKETLEQ
QKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARRLLELGPKPEVAQQ
TRKILTACEKNPTDAYQLNYDMHNPFDICAISYRPIYRGKPVEKCPLSGACYCPEFRGQI
CRVTTVTEIGKDVIGLRISPLQFR
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgctcaccaaattcgagaccaaatcggctcgcgtgaaagggcttagctttcaccccaag
cggccctggatcctaacaagcctgcacaatggagtgatccagctttgggactatcggatg
tgtacgctcattgacaaatttgatgaacacgatggtcccgttagaggtattgatttccac
aaacagcagccgctctttgtgtctggaggagatgactacaaaattaaggtctggaattac
aaactgcgacgctgtctcttcactctgttggggcacctggattacatccgcaccaccttc
ttccaccatgaatatccctggatcttgagtgcatctgatgatcagacgattcgggtttgg
aactggcagtccagaacttgtgtttgtgtactgaccggacacaaccattacgtcatgtgc
gcccagttccacccttctgaagatctggtggtatcggccagcttggatcaaactgtgcgc
gtttgggatatttctggcctaaggaagaagaatctttctcctggagctgtggagtccgat
gtccgcgggatcacgggcgtagacctttttggcacaactgatgcagtagtgaagcacgtc
ctggagggacatgaccgcggagtgaactgggctgctttccaccccaccatgccccttata
gtgtcgggagctgacgaccggcaagtcaaaatctggaggatgaacgaatcaaaagcttgg
gaagtggacacgtgccgcgggcactacaacaacgtctcctgcgcagtgttccatcctcgc
caggaactcatcctcagtaactccgaggacaagagcatccgtgtctgggacatgtccaaa
cgcacgggcgtccagactttccgcagggatcacgatcgcttctgggtgttggcagctcac
cccaacctcaacctctttgctgcaggacatgacggcggcatgatcgtgtacaagctggaa
cgcgaacggcctgcctacgccgtgcacggcaacatgctctactacgtgaaggaccgcttc
ctccgtcagctggatttcaacagctccaaagacgtggccgtgatgcagttgaggagtggg
tccaagttccccgtgttcaacatgtcgtacaacccagctgagaataccgtcctcctctgc
actagagccagtaatctggagaacagcacctacgacctgtacaccatcccgaaggatgca
gattcccagaatcctgatgctcccgaaggaaaacgttcttctgggctgacagctgtgtgg
gtggctcggaatcgcttcgcagtcttggatcggatgcactcgattctgatcaagaacctg
aaaaatgagatcaccaagaaggtccaggtccccaactgtgatgagattttctacgccggc
accgggaacctactgctgagagatgcagattccatcactctctttgacgtgcagcagaaa
cggactctgtcctcagtgaagatctccaaggtgaagtacgtcatctggtcagctgacatg
tcgcacgtggcactcctggccaagcatgccatcatgatttgcaaccggaagctggactcc
ctgtgcaacatccacgagaacatccgggtcaagagcggtgcctgggacgagagcggggtc
ttcatctacacaaccagcaaccacatcaaatatgctgtcaccaccggcgatcacgggatc
atccgcaccctggacttgccgatctacgtgacccgggtgaaggggaacaacgtctactgc
ctggaccgggaatgccggcctcgcgtcctgaccatcgacccgaccgagttcaagttcaag
ctggcgctcatcaaccggaaatatgacgaggtccttcacatggtgcgcaacgccaagctt
gtgggccagtctatcatcgcttacctccagaagaagggctaccccgaagttgctctgcat
tttgtgaaagacgagaagactcgcttcagcttggccctggaatgtggcaacatcgagata
gcgctggaggccgccaaagccctggatgataagaactgctgggagaagctgggggaagtg
gccttgctgcagggcaaccaccagatcgtggagatgtgctaccagcgcaccaagaacttt
gacaagctctccttcctgtacctgatcactggcaacctggagaagctgcgcaagatgatg
aagatagctgagatcaggaaagacatgagcggccattaccagaatgctctgtaccttggg
gatgtcgcggagagggtgaggatcctgaagaactgtggacagaaatccttggcctatctc
acagctgcaacccacggcttggaagaggaagcagagagcctgaaggagacctttgacccg
gaaaaggaaacgattccagacatcgacccccatgccaagttgctccagccaccagctccc
atcatgcctctggacaccaactggcccctgctcactgtctccaagggtttcttcgaaggc
acaattgccagcaaaggtaaaggaggtgctttggcggctgatatagatattgacactgtg
ggcaccgaaggctggggagaagatgccgagctgcagctggacgaagatggctttgtggat
gctggggaaggctttggagatgaggccacggctaaaggtcaagaagaaggcggcggatgg
gaagtcgaagaggacctggatctgccacctgagctggatgttcctgctggtcctgcagga
ggatcagagaatggcttctttgtaccccccaccaaaggcaccagccctgcccaggtttgg
tgtaacaattcccagctgcccgtcgaccacatcctcgctggctcttttgagacggccatg
aggcttctccacgaccaggtgggagtgaccacctttgccccttacaagcagcttttcctg
cagacctacgctcggggccgcaccacgtaccaggccttgcccagcctcccttccatgtac
ggataccctcaccgcaactggaaggatgccgggttgaagaacgccctcccagccgtcggg
ctgaagctgaacgacttgatccagcgcctgcagctgtgctaccagctcaccacggccggc
aagtttgaggaggcggttgagaagttccgctccattctcttgagcgtgccattgctcgtg
gtggacaacaagcaagagattgccgaggcccagcagctgatagccatctgccgagaatac
attgtggggctgtcgatggaaatcgagaggaagaaactgcccaaggagacgctggagcag
cagaagcgcatctgtgagatggccgcctattttacgcactccaacctgcaacccgtccac
atgatcctggtcctgcggaccgccctgaacctcttcttcaagctcaagaacttcaagaca
gcagccaccttcgcccgccgacttctggagcttggtcccaagcctgaggtagcacagcag
acccgcaaaatcctaaccgcttgcgagaagaaccccacggatgcctaccagctcaactac
gacatgcacaacccctttgatatatgtgccatctcctaccggcccatctaccggggcaaa
ccagtggagaagtgcccactgagcggggcttgctactgtcccgagttccgtggtcaaatt
tgcagagtcacaaccgtaacggagattggcaaagacgtcattggcttgagaatcagccct
ctgcagttccgctga
DBGET
integrated database retrieval system
