Sphaerodactylus townsendi (Townsend's least gecko): 125442545
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Entry
125442545 CDS
T08213
Symbol
SMG5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125442545 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stow03019
]
125442545 (SMG5)
03032 DNA replication proteins [BR:
stow03032
]
125442545 (SMG5)
Messenger RNA biogenesis [BR:
stow03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
125442545 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
125442545 (SMG5)
DNA replication proteins [BR:
stow03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
125442545 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
WHD
Motif
Other DBs
NCBI-GeneID:
125442545
NCBI-ProteinID:
XP_048369906
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All DBs
Position
LG01:24059424..24099801
Genome browser
AA seq
1050 aa
AA seq
DB search
MSQGSGSGGGEPEAKALHTKRLYRAVVEAVHRLDLILGNKAAYQEVFKPENISLRNKLRE
LCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLIAGIGF
YQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASDKEMEWAQMACHRCLVYLGDL
ARYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEATYCYLRCIQS
EVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPSKKRCKDIKRLLVSFMYLHSLLQPK
SSSVDSELTSLCQSVLEDFNLCLFYLPSSPNLSSANDDEEECENGYSFLPDLLIFRMVII
CLMSVHSLKRAGSKQYSAAIAFTLALFSHLINHVNIRLQAELEEGENPVPAFQNDGAEEP
ETREPSNPIEREAEADLANHRPSEEKRKSETKKSKKYSRLSCLRRRRHAQKVDESDLSEG
FDSDSSPDSTKGSDGSETGSEKSDEEAEAAFDMETDSDMNSQESRSDLEDIEDEPDAEGG
GQARSVRSEDGETSGSVEGEGRLADSKGPGVPKTEPSEPVANGPGSLGTSDASIASNLQA
MSTQLFQTKRCFRLAPTFSNVLLKPNCEPPIQKEVADSKPCVNGDLEKPGVAEQDDASES
EESVTSNKSCKNERSLQEKLEIITSEGLLPTVKVFLDWLRTNTDLIIMCAQSSQSLWNRL
SVLLNLLPSARDLQDSGLAFCNEVKNMLPGCELPDLNAYLLLPEDVALRNLPPLKNAHKR
FNFEQDRPVLSETEESVVRICCIRSFGHFITHLQGSILQFNSEVGIFISIAQSEQDNLLQ
QAQAQFRMAAEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQCVMSPYLVPDTQALCQ
HISTIRQLAASGRFIVIIPRTVIDGLDFLKKENAGARDSIRYLEAEFKKGNRYIRCQKEA
GKSFERHKLKRQDLDAWNLYKILDSCKQLTASQGGSEDDTTGMVTVITGLQVDDPGKLSA
PVQSAIQAAANASVEVKNVLEFYKQWKEMG
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atgagccagggcagcggaagcggtggcggggagcctgaggccaaggccctccacaccaag
cggctctaccgagctgtggtagaagcagtgcatagattggatctcattcttggaaacaag
gcagcttatcaagaagtatttaaaccggagaacatcagcctgagaaacaagttacgcgaa
ttatgtgtgaagctgatgttcttgcacccggtggattatggaaggaaagcggaggaattg
ctctggaggaaagtctactacgaggtcatccagctcattaaaacaaataagaagcacatt
catagtcgcagtaccctggagtgtgcctaccgtactcacctgattgctggtatcggattt
taccagcaccttctcctctacattcagtctcactatcaactcgaactccagtgttgcatt
gactggacacatgtaacagatcccctgataggctgcaagaaacctgtatctgcgtcggac
aaggagatggagtgggctcagatggcctgccaccggtgtctggtttatctgggagattta
gcacggtatcagaatgaactggcaggcgtggacacagaattgctggccgagaggttttac
tatcaagccctttcagttgcgccgcagattgggatgccctttaatcagctggggacactg
gctgggagtaaatactacaatgtggaagctacctactgctacctgcgctgtatccagtca
gaagtgtcctttgaaggagcttacgggaacctcaaacgcctttatgacaaggccgccaaa
atgtatcaccagctgaagaaatgcgaaaccaggaaattgtcaccgagcaaaaagaggtgc
aaagatattaaaaggttactggtgagcttcatgtacctccacagcctcctgcagccgaag
agcagctccgtggactcagagctgacgtctctctgccagtcggtcctggaggatttcaac
ctctgtctgttctatttgccctcttcacccaacctgagctctgccaacgacgacgaagag
gagtgcgagaacggctactccttcctgccagacctccttatcttccgtatggtcatcatc
tgcctgatgagtgtccacagcctcaagagggcaggctccaagcagtacagcgcagctatc
gctttcacgctggccctcttctcgcacctcatcaaccacgtcaacattcgcctgcaggca
gagctggaagaaggcgagaacccagttccagcctttcagaatgatggcgcagaggagcct
gaaaccagggagccatccaaccctatcgagagagaagctgaagccgacctggccaaccac
cgacccagcgaggagaagcggaaaagcgagaccaagaagagcaagaaatactcacgcctc
tcttgtcttcgccgccgccgccatgcccagaaggtggacgagagcgacctgagcgagggc
tttgactccgattccagccccgattccaccaaggggagcgacgggtctgagacgggctca
gaaaagagcgacgaggaggccgaggcagcttttgacatggagacggactctgacatgaac
agccaggaatcccgctcagacttggaggatatagaggacgagccggacgcagaaggggga
ggccaagcaaggagcgtgaggagtgaagacggggagacctcaggctccgtggaaggcgaa
gggaggctggcggactctaaaggccctggcgtccccaagactgagccctcggagcctgtg
gctaatgggccaggctcactgggcaccagcgacgccagcatagccagcaacctccaagcc
atgtccacgcagctcttccagaccaaacgctgcttccgactagcccccactttcagcaat
gtcctcctcaagcccaactgtgagccgcccatccagaaagaggtggcagacagcaagccc
tgtgtcaatggggacctggagaagcccggcgtggctgagcaagatgatgcttcggagtcg
gaagaaagtgtcaccagtaacaaatcctgcaagaacgagcgttctctccaagagaagctg
gagataataaccagcgaggggctgctgccaactgtcaaggtgttcctagactggctgaga
acaaacacagaccttatcattatgtgcgcacagagctctcagagtttgtggaacagactt
tctgtccttctgaacctgctcccttcagctagagacttgcaagactcgggactggccttt
tgcaatgaggtgaagaacatgttgccaggatgcgaacttccagacctgaacgcctacttg
ctcctgccggaagatgtggccctccgtaaccttcccccgctgaagaacgcacacaagaga
tttaattttgagcaggacaggcctgtgctttcagaaaccgaggagtcggtggttcgtatc
tgctgcatccggagcttcggccacttcatcacccaccttcaaggcagcatcctgcagttt
aattctgaggtcgggatcttcatcagcattgctcagtctgagcaggacaatttgctgcag
caagcccaggcccagttccgtatggctgctgaggaggcacgccggaacaggctcatgaga
gacatggctcagcttcggctgcagctggaggtgtcgcaattagaagggagtctccagcaa
cccaaagcacagtgtgtcatgtccccctaccttgtccctgacacccaggcactctgccag
cacatctccaccatcaggcagttggctgccagcggaaggtttatcgtcatcatcccacgg
acagtaattgatggcttggacttcctgaagaaagagaatgcaggtgctcgtgacagtatc
cgatacttggaggcagaattcaaaaagggaaacaggtacattcgctgccagaaagaagcg
ggaaagagctttgagaggcacaagctgaagaggcaggatttagatgcttggaacctctat
aaaatactggacagctgcaaacagctgacagcatcacaaggaggcagtgaagacgacacc
acagggatggtgaccgtcatcacaggcttgcaggtggacgacccgggcaaactttcagca
cccgtgcagtctgccatccaggcggcggccaacgccagcgtcgaggtgaaaaacgttctg
gaattctacaagcagtggaaggaaatgggttga
DBGET
integrated database retrieval system
