Sphaerodactylus townsendi (Townsend's least gecko): 125443419
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Entry
125443419 CDS
T08213
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
125443419 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
stow01009
]
125443419 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
stow04515
]
125443419 (PCDH1)
Protein phosphatases and associated proteins [BR:
stow01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125443419 (PCDH1)
Cell adhesion molecules [BR:
stow04515
]
Cadherins
Protocadherins
125443419 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
Mid2
Syndecan
Motif
Other DBs
NCBI-GeneID:
125443419
NCBI-ProteinID:
XP_048371481
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All DBs
Position
LG14:complement(34430129..34569505)
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AA seq
1227 aa
AA seq
DB search
MPARQRRAGSSGRQPPAPPDGPPGTRPRFGMQRLASCLGLWLFLQLPCLGSGTRVVYKVQ
EEQPPNTLIGSLAADYGFPDMGHLYKLEVGAPYLRVDGKTGDIYTTETSIDRESLRECQQ
FFPGEPCFLEFEVSITDLLNNSPRLLEGQIEVLDINDNTPNFASPVITLAIPENTNIGAL
FPIPLAMDRDTGANGVASYELMPSPDAQKLFGLQVAEDQDEKQPQLIVMGNLDREQSESY
DLTIKVQDGGSPPRASSALLRITILDMNDNAPKFEKPLYEAELSENSPIGHSVLQVKAND
SDQGANAEIDYSFHQASDVVRRLLRLDRASGLITVQGPVDREDINVLRFSVMAKDKGANP
KTARAQVVISIRDMNDNAPSIEIRGIGLVTHQDGMANISEDVPVETPVALVQVSDRDEGE
NAVVTCVVAGDVPFQLRQASDTGSDSKKKYFLQTTTPLDYEAVKEYTIEIVAVDSGNPPL
SSTNSLKVQVVDVNDNDPVFSQSYTEVAFPENNAPDDLVVEVSATDADSGSNANLVYSLD
KETSPQGIFSIDPESGEIRVKTVLDRELQERYEFLVVAADKGSPVRKGTASVAINVMDRN
DNEPKFMLSGYNFSVMENMPPLSPVGMVTVIDADKGENARIHLSVEQDNGDFVIQNGSGT
ILSSISFDRERQSTYTFRLKAVDGGDPPRSAYVGVTINVLDENDNAPVIISPSNASYKHI
LPHTSPGQQVMSIGAEDIDTGVNAELQYSITGGNPFELFKISPHSGNITLEKEILRKHHG
LHRLVVRVNDKGKPSRHGTALVHFYVNETLANRTLLETLVGHSLDTPLDIDIAGDPEYER
SKQRSNILFGVVAGIVTVTLVIVLVVLVQYCRQKEAKSGYQAGKKETKDLYAPKQGSKGN
KAKGKVKKSKSPKPPKPAEDEEETGLQKSLKFNLMNDSVSDSPRIHLPLNYPPGSPDLGR
HYRSNSPLPSIQLQPQSPSASKKHQVVQDLPAANTFVGTGDTNSTGSEQYSDYSYRTNPQ
KYSNKQLPHRRVTFSAANQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPED
HYERTTPDGSIGEMEHPENDLRSLPDVAMTGTCTRECTEFGHSDTCWMPGQSSPSRRPKN
ALKLSTFVPYQDRGSQEQVGNGSPRLSEERSTKMANLRLLSTYSAFSNSSHEPCKDSPLE
EIPLTQTSDFQAATTPSSQTAKREIYL
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcccggcagcggcgcgcggggagcagcggcagacagcccccggcgcctccggac
gggcccccaggcacccgtccacggttcggcatgcagcggctggcttcctgcctgggcctg
tggctcttcctgcaactcccctgcctgggttccgggacgcgggtggtctacaaggtgcag
gaggagcagccgcccaacaccctcatcggcagcttggcagcagactacggcttcccagac
atggggcacctctacaagctagaggtgggggccccctacctgcgtgtggacggcaagact
ggcgacatctacaccaccgagacctccatcgaccgggagagcctgcgggagtgtcagcag
ttcttcccgggagagccctgttttctagagttcgaggtttccatcacggacctgttgaac
aacagcccgcgcctgctggaggggcagatagaggtgctggacatcaatgacaacaccccc
aactttgcctcccccgtcatcaccttggccatcccggaaaacaccaacatcggggcgctc
ttccccatcccgctggccatggaccgggacaccggtgccaacggagtggcttcctacgag
ctcatgcccagcccggacgcccagaagctgttcggcttgcaggtggccgaggaccaagac
gagaagcagccgcagctgatcgtcatggggaacctggaccgggagcagtccgagtcctac
gacctcaccatcaaagtgcaggacgggggcagccccccgcgggccagcagcgccctgctg
cgcatcaccattctggacatgaacgacaacgcgcccaagttcgagaagcccttgtacgag
gcggagctgtcggagaacagccccattggccactctgtgctgcaggtcaaggccaacgat
tctgaccagggggccaacgctgagatcgattattccttccaccaggcctcagatgtggtt
cgtcggctactacggctagacagagcctcaggactgatcaccgtgcagggtccagttgat
cgcgaggacatcaatgtgctcaggttctcagtgatggcaaaggataagggggccaacccc
aaaacagcccgtgctcaggtcgtgatcagcatcagggacatgaacgacaacgccccgtcc
attgaaatccgtggcataggcttggtcacccaccaggatgggatggccaatatatcagaa
gacgttccggtggagaccccagtggctctcgtacaagtgtccgaccgggacgagggggaa
aacgccgtggtgacttgcgtggtggctggcgacgtccccttccagttgcggcaggccagc
gacacaggcagtgacagcaaaaagaagtatttcttgcagaccaccacaccgctcgactac
gaggccgtgaaggagtacaccattgagattgtggctgtagactcaggcaacccccccttg
tccagcaccaactccctcaaggttcaggtagtagatgtcaatgacaatgaccccgtcttc
agtcaaagctacaccgaggtggcatttcctgaaaacaacgccccggacgatttggtcgtg
gaagtgagcgccacggatgcagacagcggctccaatgctaacttagtgtactccctagat
aaggagacttcaccccaaggcattttctccattgatcccgagtccggtgagatccgggta
aagactgttctggaccgggaactgcaagaacgctacgaattcttggtggttgccgctgac
aagggcagtcccgtccgcaaaggcaccgcctcggtcgccatcaacgttatggaccgcaac
gacaacgagcccaaatttatgctcagtggctacaatttctctgtcatggaaaacatgccc
cccttgagccccgtgggcatggtgactgtcattgatgcagataaaggggagaatgcccgc
attcatctctccgtagaacaggacaatggcgactttgttatccagaacggttccggcacc
atcctctccagcatatcctttgatcgggagcggcagagtacttacaccttcaggctcaaa
gcggtggatggtggtgacccacccagatctgcctatgtcggtgtgaccatcaatgtatta
gatgagaacgataacgccccggttatcatttctccatccaacgcctcctacaagcacatt
ctgccccacacgagtcccgggcagcaggtcatgagcatcggggccgaagacattgacact
ggggtcaacgcggagttgcaatacagcatcaccggtggaaacccctttgagctgttcaag
atttcgccccacagcggaaacatcaccctggagaaggagattctccgcaagcaccacgga
cttcaccgcttagtggttcgagtcaacgacaagggcaaaccctctcgccacggcacggct
ctggtccacttctacgtcaatgagacgttggccaaccgtaccttgctggagaccctagtg
gggcacagcctggacacgcccctggacattgacatcgccggagacccggagtacgagcgc
agcaagcagcgcagcaacatcctttttggcgtggtcgccggcatcgtcacggtcacgctg
gtgatcgtgctcgtcgtgctggtgcagtattgccgccagaaggaggcgaagagcggctac
caagccggcaagaaggagacgaaggatctgtacgctcccaagcaaggcagcaaaggcaac
aaagccaagggcaaggtgaagaagagcaaatcccccaagccgcccaaacctgccgaggac
gaggaagagacgggcctgcagaagtccctgaagttcaacctgatgaacgactcggtcagc
gacagcccccgcatccacctgcccctgaactaccctcctggcagcccggacctgggccgg
cactaccgctccaactcgcccctgccttccatccagctccagccccagtcgccctccgcc
tccaaaaagcaccaagtggtgcaggacttgccggccgccaacacctttgtgggcaccggg
gacaccaactccacgggctctgagcagtattcagactacagctaccgcaccaacccccag
aaatactccaataagcagttacctcatcgtcgagtgacgttttccgcagccaatcaggct
caggacctgcaggatccatcccaacacagttactatgacagcggcctcgaggagtcagaa
acaccaagcagcaaatcctcatcagggccccgtattggacctctggctctgcctgaggat
cactatgagcgcaccacgcccgatggcagcattggggagatggagcaccccgagaacgat
ctccggtctctgcccgatgtagccatgacaggaacttgcacccgggaatgcacagagttt
ggccactctgacacctgctggatgccgggccagtcctctccgagccggaggccgaagaac
gccctcaaactctctacgtttgtgccttatcaagacagagggagtcaagagcaagttggg
aatggcagccccagactctcagaagagcgcagcaccaaaatggctaacctccgcctgctc
tccacgtacagtgccttctccaacagtagccatgagccctgcaaggactccccgctggag
gaaatccctctcacccagacctcagatttccaggcagccaccacaccgtcctcccaaacc
gccaagcgggagatctacctgtga
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