Sphaerodactylus townsendi (Townsend's least gecko): 125443812
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Entry
125443812 CDS
T08213
Symbol
TDRD12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12 isoform X1
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
stow03036
]
125443812 (TDRD12)
Enzymes [BR:
stow01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
125443812 (TDRD12)
Chromosome and associated proteins [BR:
stow03036
]
Eukaryotic type
Gene silencing
piRNA pathway
125443812 (TDRD12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
Helicase_C
CS
Motif
Other DBs
NCBI-GeneID:
125443812
NCBI-ProteinID:
XP_048372099
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Position
LG14:20262575..20294943
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AA seq
1278 aa
AA seq
DB search
MIDIFVLKIENPDCFWVHVGDGNFLENETEYKKLYREINQFYNKSYKRVDEIKPSVLEEG
QVCVVYCHELKSWCRAIVKSILSCTDYCLVECFLVDHAKTVPVKTDRICVALESFMRLPY
RAKKFRLYCTKPVTLRVDYCNNNAEIVPANRWDVAAVQYFQNLLNATAKVEAKLCAVEEE
SFDVYLYATIKGQKICVNDDLVAKNFAYYGMKDNEALRIVPKQKMQPTLSPESHSEKINP
ALVLWPTLLQTKESNHLKTYAAVSDNTKEIKHKSLQETASHNEVTESNVVVAVPPLEKGI
ADSVQANRKTNCPLQQKTTQKQKEIEKGLDKKTLCLKLLQFLNPDPLKASDRHDGKEEFH
VNAIACLPIVLSNEIDPCTTLETAPLFPELKKELLRNQVLCPNHIQSYSWPPIARGCDSI
IITPENDPLVYLLPLITFLQSRSCYVSLPSRNGPVALIICPGWKKAEQVFEFLEIYTHSS
RPLHPRLLLLGLNKEEIKNVKLPRGCEVIVTTPYNALRLLECHSLMFLRLCHLVFDEAEV
LFSDANEEMLSILEYYKNHSSIEDRESAPWQIVAVGSRWNKSLQYLTKEFMNDPYVVIAS
MEEAAVYGHVQQIVRMCLECDRVSTLLQVLDCTPTNTQKTLVFTSSQEETDMVSKAVANT
SIFCLRVQPGIDFGYVAAQWNKKFTSATHAVLVLTDDCMSALGITDATCVIHFSFPTSPR
IFGARLYGMSANFQKSVEKVLSRQQGEPKAKSILLLTEKSMCHAAGVLRYLERTEAKIPP
ELYDFISGVVEAKEESKSERPLCHHLKTIGVCKFKNNCPDRHRINLQKDSPQKVMEDTLP
TAGNVTILPLFVVDATQYFGHIVGKPKDPYSTLAEDLKEYYQKASNHISVDTVEKLALYG
LQENNSFHRVQVLEVAAKEENSVFYSVHIKYIDEGRSGQFQNYQLLHLPEKFQVLPPQAV
EFIVCRVKPIDNETEWHPKVTRYIHQKIRGKPHEAKIVLTLGNTIWVDPMVRVTRLSDLK
TSINEYNVRSEILSTGMGVDNPEHTQELQKLFRNAAVTPEKKDLPPLMHLLKCGTSELPV
PAEQNVSDQVRPSLQSTQGDIKSNEPIAEDETATDDDETAQNKKAEESPQLPDKCFYPII
KWFDKGDVAVMKIKLRNVTEYTCKFSTQRIIFSAFAGDKFYYADMELQGNILKEKSTCFL
KSDEPTIILAKAKEEPWCNLLKHKNPHVTFDLDYLEDCEQNIRFPVGPKKGYQHIKEEKQ
EEDQSSIDTDTESDDSSC
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atgattgacatctttgtactgaagattgaaaatccagactgcttctgggttcatgtagga
gatggaaattttttagaaaatgaaacagaatacaaaaaactttacagagaaataaatcag
ttctataacaaatcatacaaacgtgtggatgaaatcaagccatccgtattagaagaaggg
caggtttgtgttgtttattgtcatgagctaaaatcctggtgcagagccattgttaaatca
atcttatcatgtacagattattgccttgttgaatgcttcctcgtagatcacgctaagact
gttcctgtgaaaacagacaggatttgtgttgccttagagtcatttatgaggctgccttac
agggcaaagaagtttaggctgtactgtacaaaaccagtaaccctgcgtgtcgattactgt
aacaacaatgcagagatagtccctgctaacaggtgggatgttgcagctgttcagtacttc
caaaacctcctgaatgcaactgccaaagttgaggccaagttatgtgctgttgaagaagag
agttttgatgtttatctttacgccacaataaagggtcaaaagatatgtgtaaatgatgat
ctcgttgcaaagaactttgcctactatgggatgaaagacaatgaagcactgcgtattgtg
ccaaaacaaaagatgcagcccactttgtcccctgagtctcattcagaaaagataaaccct
gcacttgttctgtggccaacattgttgcaaaccaaagaatccaatcatttaaaaacttat
gctgctgtttctgataatactaaggaaataaaacataagagtctacaggaaacggcctcc
cataatgaagtaactgagtcaaatgtagtggtggctgttccccctttggaaaaaggcatc
gcagattctgtacaagccaataggaagactaactgcccattgcaacagaaaactactcaa
aagcagaaggagatagagaaaggtcttgataagaaaacgctgtgtttgaagcttctgcag
tttttaaaccctgatcctttgaaagctagtgacagacatgatgggaaagaggagtttcat
gtgaatgccattgcctgccttcctattgttctgagtaatgaaattgacccctgcaccacc
cttgaaacagcgccactctttcctgaactgaaaaaggagcttctccggaatcaggtccta
tgtcctaaccatatacagtcatattcctggccaccaatagctcgtgggtgtgattcaatt
ataatcactcctgaaaatgatccacttgtgtatcttctgccacttataacatttttgcaa
tccagaagttgctatgtgtccctgccatcaaggaatggtccagtggcattaatcatatgt
cctgggtggaagaaagctgaacaagtgtttgagtttctagaaatctacacccacagttct
agacctcttcatcccagattgcttttactgggcttgaacaaagaagaaatcaagaatgtg
aaacttccaagaggatgtgaggtcattgtaacaaccccttataatgctttgcggctgctc
gaatgccacagtttaatgttcctcaggctttgccatcttgtgtttgatgaggctgaggtg
ctgttttctgacgccaatgaagaaatgttaagtatcttggagtattacaaaaatcactcc
agcattgaagacagggaatctgcaccatggcagatagttgctgtgggaagccgttggaac
aaaagcttgcaatatttaaccaaagagttcatgaatgatccatatgttgtgatcgcctcc
atggaagaagcagccgtgtacgggcatgtacagcagattgtacggatgtgtcttgagtgt
gacagagtctctacattacttcaagtattggattgtactcctactaatacacagaagaca
ttggttttcaccagttctcaagaagaaactgatatggtttccaaggcagtggcaaacact
tccatattttgcttgagagtacagccaggaattgattttggttatgttgcagctcagtgg
aacaaaaagtttacctccgccacacatgctgtattagttttaactgatgactgcatgtca
gcgctaggaattactgatgcaacgtgtgtcatccatttcagttttccaacctccccaaga
atctttggtgcacgtttatacggcatgtctgctaacttccaaaagtcagtagaaaaggtt
ctgtctcggcaacaaggagaaccaaaggcaaaatccatcttactgttgacagaaaaaagc
atgtgccatgctgctggggttctgcgttatttagaacgcacagaagccaaaatcccacca
gaactgtatgacttcatatctggagtggtcgaagccaaagaagaaagtaagagtgagagg
ccactctgtcaccacctgaaaacaatcggggtttgcaagtttaaaaataactgtccagat
cgacatcgaattaatttgcaaaaagattcaccccaaaaggtgatggaggacactctgcct
actgcaggaaacgtaacaatactaccactttttgttgtggatgccacccagtactttggc
cacatagtgggtaaaccaaaggatccgtattcgactcttgcagaagatctgaaggagtat
tatcagaaagctagcaatcatatctcggttgacacagtggagaagctggcactatatgga
ttacaagaaaataattctttccacagggtccaagtattggaagtggctgcaaaagaagaa
aactctgtgttttacagtgttcatatcaagtacatagatgaaggcagatcaggtcaattc
cagaattatcagctgctacacttgccagagaagtttcaagtcttaccccctcaggctgtg
gaatttattgtttgtagggttaagcccattgataatgaaacagaatggcacccaaaggtt
accagatacattcatcaaaagatcagggggaaaccacatgaagcaaaaatagtacttacc
ttgggaaacactatttgggtggatccaatggttcgggtcaccaggctctcagatctgaag
acttctatcaatgaatacaatgttcgctctgagattctttctactggaatgggagttgac
aatccagagcacacacaagaactccagaagttgtttcgaaatgctgccgtaacccctgag
aaaaaggacttgcctccattaatgcatcttctgaaatgtgggacaagtgaattgcccgtg
cctgctgagcagaacgtgtcagaccaggtcaggccgagtttacagagcacccagggagac
atcaagtccaatgaaccgattgcagaagatgaaaccgctactgatgatgatgaaactgca
caaaataaaaaagcagaagaatctccacagctgcctgacaaatgcttctatccaataata
aaatggtttgacaagggggacgttgctgtaatgaagataaaattacggaatgttactgag
tacacctgcaaattttccacacagaggatcatttttagtgcttttgcaggcgacaaattc
tattatgctgacatggagctgcaggggaacatcctcaaagaaaaatctacatgcttcctt
aagagtgatgagcccacgatcatccttgcaaaagcgaaagaggagccgtggtgcaacttg
ctaaagcacaaaaaccctcatgtgacatttgatcttgattacttggaagactgtgaacaa
aacattcgctttcctgttggtccgaagaaggggtatcagcatataaaagaagaaaaacag
gaagaggatcaatcgtcaatagacactgacacagagagtgatgattcatcttgttaa
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