Sphaerodactylus townsendi (Townsend's least gecko): 125444025
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Entry
125444025 CDS
T08213
Symbol
TRIM28
Name
(RefSeq) LOW QUALITY PROTEIN: transcription intermediary factor 1-beta
KO
K08882
tripartite motif-containing protein 28 [EC:
2.3.2.27
]
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
stow01001
]
125444025 (TRIM28)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
stow04121
]
125444025 (TRIM28)
Enzymes [BR:
stow01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125444025 (TRIM28)
Protein kinases [BR:
stow01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
125444025 (TRIM28)
Ubiquitin system [BR:
stow04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
125444025 (TRIM28)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-B_box
ANCHR-like_BBOX
zf-RING_UBOX
PHD
zf-RING_5
zf-RING_2
zf-C3HC4
YaaC
Motif
Other DBs
NCBI-GeneID:
125444025
NCBI-ProteinID:
XP_048372421
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Position
LG15:20075626..20099821
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AA seq
851 aa
AA seq
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VFARWEVDMSATAPAPAEAAAGGGSSGDKQQSSAAAGSSSSAAAAAASTTEGYDLLEKCG
VCRERLRFERDPRLLPCLHTVCKECLKAEPNAAAGNNKEGQVVDCPVCKHQCYMKDIVEN
YFLRDGGIEPLGDTRDANQCCTSCEDNAPATSYCVECSEPLCETCVEAHQRVKYTKDHTV
RSTGTCKAQEREKTVYCTVHKHEPLVLFCDTCDTLTCRDCQLNAHKDHQYQFLEDAVKNQ
RKMLASLVKRLGDKHANLQKSTKEVRTSIRQVADVQKRVQVDVKMAILQIMKELNKRGKV
LVSDAQKITEGQQEKLERQHWTMTKLQRHQEHILRFANWALESDNNTALLLSKKLIYFQL
HRALKMIVDPVEPHGDMKFQWDLNAWTKSAETFGQIISERSGLPVVLNAQPSQQRANATG
AVPGSVRQPGMPPSQGVQQMSLQTGIMNRASNSQQGVPDCYINDASASSAGQPMDIDGFG
VEGYSGDANVSGTKRPRGQDGESGVMRKVPRVSLERLDVDLTSDNQPPVFKVFPGTSTED
YNLIVIERGVYQGLAAASTAVKEEQMEAAIEHPAAADAKDTKPILLPQDASLAEGSSATR
LISPSGSSSSALDMQSVQSHEGTANGEEAAFCRVCLKAGAVVMCDGCKKCYHLDCHLPSL
QDIPSQEWKCLLCEQPMAASEEVGTALTAISVDGDQSILRNADQQRCERVLLELLCYEPC
RPLHRLSNATEGQNTIDLTLIRAKLQGKLSPPYTSPDQFADDVWKMFRQFNKLTEDKEDV
QSIIVLQRFFESKLNAVFGDRKFSVPADPINVDEPQRGESSLSLHSSPATDPGEVASSKP
EGSGGDQGMAA
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
gttttcgctcggtgggaggtggacatgtcggccacggctccagctcctgcggaagcggcc
gctggtgggggcagcagcggggacaagcagcagtcttccgccgccgccggctcctcctcc
tcagcagccgccgccgccgcctccaccacggaaggctacgacctgctggagaagtgcggg
gtgtgccgggagcggctgcgcttcgagcgggacccgcgcctgctgccttgcctccacacc
gtttgcaaggagtgcttgaaggccgagcccaatgccgcggcgggcaacaacaaggaaggc
caagtggttgactgtcctgtgtgcaaacaccaatgttacatgaaggacattgtggagaac
tatttcctgagggatggtggcatagagcctcttggggataccagagatgctaaccagtgt
tgtaccagttgtgaagacaatgcccctgccaccagctactgcgtggaatgctcggagccc
ctgtgtgagacatgcgtggaagctcaccagagagtgaagtacaccaaggaccacactgtc
cggtccacaggcacatgcaaggcccaggagagagagaagacggtctactgcactgtccac
aaacatgagccactggtgctgttctgtgacacctgcgacactctgacctgccgggactgc
cagctgaatgctcacaaggatcatcagtaccagttcttggaggatgcagtcaagaaccag
cgcaagatgctggcctcattggtcaagcgccttggcgataagcacgccaatctccagaag
tcgaccaaggaagtgcgtacctcaatccggcaggtggcggatgtacagaaaagagtacag
gtagacgtgaagatggccatcctacagatcatgaaggagctgaacaagcgaggcaaggtc
ctggtcagcgatgcacagaaaatcactgaagggcagcaggagaagctcgagaggcagcac
tggaccatgactaagctccagcgccaccaggagcacattctgcgctttgcaaactgggcc
ctggagagtgacaacaacacggctctgctgctgtccaaaaagttgatttatttccagctg
cacagagccctgaaaatgattgtggatcctgtggaacctcacggggacatgaaattccag
tgggacttaaatgcctggaccaagagcgcggagacatttggtcagataatttcggaacgg
agtggcttgccagtggtgctcaatgcccagccctcccagcagcgagccaatgccactggt
gctgtgcccggttcagtcagacaacctggcatgccaccttcccagggtgtccagcaaatg
tctctgcagacaggcataatgaacagggcctccaacagccagcagggtgtccctgactgc
tacattaatgatgccagtgcctcttctgcagggcagccaatggacatcgacggctttgga
gttgaaggatattctggtgatgcaaatgtgtctggaactaaaagaccccgtggccaagat
ggagaatcgggtgtcatgcgcaaagtgccccgcgtaagtctggagcgactggatgtggat
ttgacctctgacaaccagccacccgtcttcaaagtcttcccaggcacctcgactgaagat
tacaacctcattgtaattgaacgtggggtctatcagggcctggcagcggcctccactgcg
gtgaaggaggagcagatggaggcagcaattgaacaccctgcagccgctgatgctaaggac
accaagcccattctcctgccccaggatgcatccctggcagaaggctcttcggccacccgt
ctcatctctcccagcggcagcagcagctccgccctggatatgcaatctgttcagagccac
gaaggcacagccaatggggaagaagctgcattctgcagggtctgcctgaaagccggcgct
gtcgtcatgtgtgatggatgcaagaagtgctaccacctggattgtcacctgccttccctt
caggacatccccagtcaggaatggaagtgcctgctgtgtgagcagccaatggccgccagc
gaagaggtcggaactgccttgactgcgatctccgtagatggcgaccagagcatcctcaga
aatgctgaccagcagagatgtgagcgagtcctccttgagctgctgtgttacgagccttgc
aggcctcttcaccgactctctaatgccacggaggggcagaacaccattgacctgaccttg
atcagagccaagctgcaggggaagctctcgcctccttacacctctcctgatcagttcgcc
gatgacgtctggaagatgttcaggcagtttaacaagctgacagaggacaaggaagatgtc
cagtccatcatagtgctgcagcgcttcttcgagtccaagctcaacgccgtcttcggagac
cgcaagttctcggtgccggcagaccccatcaatgtggacgagccgcagaggggagagagc
agcctctctctccacagctccccagccactgacccgggggaagtcgcttcttccaaacct
gaggggagtggtggggatcagggaatggcagcataa
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