Sphaerodactylus townsendi (Townsend's least gecko): 125445878
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Entry
125445878 CDS
T08213
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
125445878 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stow03400
]
125445878 (MSH6)
DNA repair and recombination proteins [BR:
stow03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
125445878 (MSH6)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Dynactin_p22
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
125445878
NCBI-ProteinID:
XP_048375263
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Position
LG01:complement(43404757..43422869)
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AA seq
1353 aa
AA seq
DB search
MSRQRSLLSFFPKAPAAHHSPPPIEQDEDEGDGGGGGGRSSPCPDSSGPKPQRGGRGRRR
TGLLGPVPVPAAESILGELVPGDLVWAKLEGYPWWPCLVYNHPTEGTFVRGRGRSSRIHV
QFFDDTPSRGWVGVKYIKPYTGSTGRETQRGGIFYSSKPEVKKAMDLADIALKKDKTERL
DLAVCDKPSESEEEDEEEMEQVSDEGEDFDTAGNGRRAKRTAGRQQHAAKAKRRRVVMDS
DSGNEGSDMEFKPEQVSSDEASNGGGDTEASDAEAGPRKEAGNSVKTFNKPPQEKTSKPP
QKESFKNDLLATPRREINLTSEIKSKLTSFAAPECFDFQSSFNGGGGVRDDTIPTAWEHD
KIDWLQDDKIKDARRRKKNDPDYDPGTLFVPEDYLKNCTPGMRKWWEMKSQNFDCVIFYK
VGKFYELYHMDAVVGVKELGLVFMKGSWAHSGFPEIAFDRFSTVLVQKGHKVVRIEQMET
PEMMEARCKSLAHPTKFDRVVRREICRIITKGTQTYSILDGDLSEDQNRYLLCVKEKLVD
SACFHRIYGVCFVDTTVGKFYVGQFLDDRHCSRFRTLLAHNIPVQILFERGNPSAETQKI
FKGLLSSTVQEGLAPGSQFWSAAKTLKTLIEEGYFEGQENSSGRLLLPLVIRSMTAESDS
LGLTPAENSELALCALGSCVFYLKKCIIDQELLSMANFEEYVPVDIHTTDTTVSSSIFAK
TSQRMVLDGVTLANLEILQNGTTGTLEGSLLEKLDMCCTPFGRRLLKQWLCAPLCNPAAI
NDRLDAVEDLLAEAAKMSEIRDFLKRLPDLEKYLGKIHSIGSSLKIPNHPNNRAVLYEEM
RYSKKRIGDFLSTIEGFKIILEIISILEDIVDGFTSKTLKQIVTVKTKNPAGCFPDLKAE
LEKWDASFDHSAARRTGVINPKAGFDSDYDKAVREISDVEERLRQYMEKQRELLGCRAMM
YWGAGKNRYQMEIAESALPNNLPDEYVLKSTRKGYKRYWTKDIEKMLAEIVSAEERRDAA
QKNCMKRLFYNFDKNNKDWRTAVECIAVLDVLICLATYSQGCDGPLCRPVFILPEKNTPP
FLELRSSRHPCINKTFFGDDFIPNDILIGVESEKPDSWTDARCVLVTGPNMGGKSTLMRQ
AGLLVIMAQLGFFVPAESCRFTPVDRVFTRLGASDRILSGESTFFVELSETSCILQHATE
HSFVLMDELGRGTATFDGTAIASAVVKEISENIKCRTMFSTHYHLLIEDYCHSPFVQLGH
MACMVENETDDPSQETITFLYKFIKGACPKSYGFNAARLADIPEEIIQMGHKKARDFEKS
TLSLRLFRRLCLIAEGAPAAVDDLHKLLTMLCE
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgccagcgctccctcctcagcttcttccccaaggcccccgctgcgcaccacagc
cccccgcccatagaacaggacgaggacgagggtgatggcggcggcggcggcggcaggagc
tcgccctgtccggactccagtgggccgaaacctcaacgtggcggccggggccggcgaagg
acggggcttttgggacctgttccagttcccgctgccgaaagtatcctcggtgaactggtc
cctggtgatttggtttgggccaaacttgaaggttacccttggtggccatgccttgtgtac
aatcatccaacagaagggacatttgtcagagggagaggaagatcttcccgcatccatgta
cagttctttgatgatacaccatcaagaggctgggttggtgtcaaatacataaagccgtat
acaggttctactggccgggaaacacagaggggaggtatattttacagctcaaagcctgaa
gttaaaaaagcaatggacttggcagacattgctttgaaaaaagataaaaccgaacgactt
gatttggctgtatgtgacaaaccttcagaaagtgaggaggaagatgaagaagagatggag
caggtgagtgatgagggtgaagattttgacactgctgggaatgggagaagagctaaaagg
acagctggacgacagcagcatgctgcaaaagccaaaaggaggagagtggtcatggattca
gatagcggcaatgaaggttcagacatggagtttaagccagagcaagtcagcagtgatgaa
gccagcaatggagggggtgacacggaggcatctgacgctgaggctggtccaagaaaggaa
gcaggaaattctgttaaaacctttaataaaccaccacaggaaaagacaagcaaacctcct
cagaaggaaagctttaaaaatgaccttcttgcaactcccagaagagaaattaatctgact
tctgagattaaaagcaagctaacatcttttgcagctcctgaatgctttgattttcagtca
agcttcaatggaggaggaggagtaagggacgataccatccccactgcatgggaacacgat
aaaattgattggctccaagatgataaaataaaagatgcccgtaggagaaagaaaaatgat
ccagattatgatccaggtacactgtttgtgccagaggactatctaaaaaactgcactcca
ggaatgcggaagtggtgggagatgaagagtcagaattttgactgtgtgatattctacaaa
gttgggaagttttatgagctgtatcacatggatgctgttgttggggttaaagagttggga
ctggtgtttatgaaaggcagttgggctcattcgggcttcccagaaatagcttttgacaga
ttctccacagttttagtccagaaaggtcataaagtggtccgtattgagcagatggagaca
cctgaaatgatggaagcacgttgtaaatctctggctcatccaacaaaatttgacagggtt
gtacgaagagaaatatgcaggatcattaccaaaggaacacaaacctacagtattctggat
ggtgacctttcagaggaccaaaaccgataccttttgtgtgtgaaagaaaaactcgttgat
tctgcttgtttccatcgtatctatggggtgtgttttgttgatacaacagtgggaaagttc
tatgtgggtcagttcctggacgaccgccattgctcaaggtttagaactcttttggctcat
aatattcctgtacagatcctttttgaaagagggaacccgtctgcagaaacacaaaagata
ttcaaaggcttactgtcttctactgtgcaagaaggcttggctcctggttctcagttctgg
agtgcagccaaaacattaaaaactctaattgaggaaggctacttcgagggccaggaaaat
tccagcggtagacttctcctgcctctagtaatcagatccatgactgcagaaagtgactca
cttggacttactcctgcggaaaacagtgagttagcgctgtgtgctcttggtagctgtgtc
ttctaccttaagaaatgcattattgatcaagagctgttatcaatggcaaactttgaagaa
tatgttcctgtagatattcatactacagacacaactgtgtcaagtagtatctttgctaaa
actagccagaggatggtgcttgatggggtgactctagcaaatctggaaatattgcaaaat
ggaaccactggtacactagaaggttcgctgctggaaaaacttgacatgtgttgtacccca
tttggaaggagactcttgaaacagtggctgtgcgcaccattgtgtaatcctgctgctatc
aatgatcgcctagatgcagttgaggacctcctggctgaggctgccaaaatgtctgaaatc
cgtgattttttgaaaaggttgccagaccttgaaaaatacttgggcaagattcacagtatt
ggatcatcccttaagatcccaaatcacccgaacaacagggcagttttgtatgaagagatg
aggtacagtaagaagaggattggagactttttgtctacgatagaagggtttaaaataatc
cttgagattatctcaattttggaagatatcgttgatggttttacatccaaaacacttaag
caaatagtaacagttaaaactaaaaatccagcaggctgtttcccagatctgaaagcagag
cttgaaaaatgggatgcatcttttgaccatagtgctgcacgcaggactggtgtgattaat
ccaaaagctggatttgattctgattatgacaaagcagtgcgggagataagtgatgttgag
gagcgcctccgtcagtatatggaaaaacaacgtgagctgctggggtgcagagccatgatg
tattggggagctggcaaaaaccggtaccaaatggagattgcagaaagtgcattgcctaat
aacctgcctgatgaatacgtgttaaagtctaccagaaaaggctacaaacgttactggacc
aaagacatagaaaagatgctggcagagatcgtgagtgctgaagaacggagggatgcagcc
cagaagaattgtatgaaaaggttattttataactttgataaaaacaacaaagactggcga
acagcggtggaatgcattgctgttctagatgtcctaatatgcctggcaacgtacagtcag
ggatgtgatggaccattgtgccgaccagtatttattctgccagaaaagaacacaccgccc
tttctggaactcagatcttcacgccacccgtgcattaacaaaaccttttttggggatgac
tttattcctaatgatatattgattggtgtggagagtgaaaagccagattcctggactgat
gctcgctgcgttctggtgactggccctaacatgggaggcaagtcaacactcatgagacag
gctggcctcctggtaataatggcccagttgggattcttcgtacccgctgaatcttgcagg
tttactcctgttgatcgagtgttcacaagactcggtgcttcagacagaattctatcaggg
gagagtaccttttttgttgagctgagtgagacttcctgtattttacagcatgcaacagag
cattcctttgttctgatggatgaactaggcagaggaacagctacttttgatggaacagct
atcgctagtgcagttgttaaagagatttcagagaacatcaaatgccgtacaatgttttca
actcactaccatttgttaatagaggattactgccatagtccttttgtgcagctgggtcat
atggcatgtatggtagaaaatgaaactgatgatccaagccaggaaacaatcacattcctc
tacaaattcattaagggggcttgtcctaaaagctatggctttaatgcagcaaggcttgct
gacattcctgaagaaattattcaaatgggtcacaaaaaggccagagacttcgagaaatca
actctctcactgaggctgttccggagactttgcctgattgctgaaggagctccagctgct
gtagatgatctgcataagctactgactatgctttgtgagtga
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