Streptococcus toyakuensis: STYK_06230
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Entry
STYK_06230 CDS
T08698
Symbol
exp9
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
stoy
Streptococcus toyakuensis
Pathway
stoy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stoy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STYK_06230 (exp9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stoy03019
]
STYK_06230 (exp9)
03009 Ribosome biogenesis [BR:
stoy03009
]
STYK_06230 (exp9)
Enzymes [BR:
stoy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
STYK_06230 (exp9)
Messenger RNA biogenesis [BR:
stoy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
STYK_06230 (exp9)
Ribosome biogenesis [BR:
stoy03009
]
Prokaryotic type
rRNA helicases
STYK_06230 (exp9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
DUF6363
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BDB08809
LinkDB
All DBs
Position
638678..640243
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AA seq
521 aa
AA seq
DB search
MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGA
HIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLF
SATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPE
LAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIENLTKK
RMKGLKPASAEEAFQAKKQVALKKIERDFADETIRGNFEKFGKDARKLAAEFTPEELAMY
ILSLTVQDPDSLPEVEIAREKPLPFKPSGNGFGGKGKGGRRGDDRRDRERRGNGRRDDFK
NGSRGNDRYDKEKRYRKDNKKPRNTSSEKQTGFVIRNKGDK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatttaatgaattaaacttgtctgctgatttgctagcagagattgaaaaagctggt
tttgtagaagccagtccgatccaagaacaaaccattcccttggcccttgaaggtaaggac
gttatcggtcaagctcagactggtacaggaaaaactgcagcctttggcttgcctaccctt
gaaaaaattcgtacagaagaagcgaccatccaagctttggttatcgctccaactcgtgaa
ctagctgtccaaagtcaagaagaactcttccgctttggtcgtagtaagggagtcaaagtt
cgctcagtatatggcggatcaagcattgaaaaacaaattaaggctttaaaatctggtgcc
catatcgtggtgggaactccaggtcgtctcttggacttgattaaacgcaaggctttgaaa
ttacaagatattgaaactcttatccttgacgaagcggatgaaatgctcaacatgggcttc
cttgaagatatcgaagctatcatttctcgtgtccctgaaaaccgtcaaaccttacttttc
tcagcaactatgccagatgccatcaaacgtattggtgttcagtttatgaaagaacctgag
catgtgaagattgctgctaaggaattgacaacagaattggttgaccaatactatatccga
gttaaagagcaagaaaaatttgataccatgactcgtcttatggatgtggaacaaccagaa
cttgctatcgtatttggtcgtaccaaacgtcgtgtagatgaattgactcgtggtttgaaa
atccgtggcttccgtgcagaaggaattcatggagacctagaccaaaacaaacgtcttcgt
gtccttcgtgacttcaaaaacggcaatctagatgttttggttgcaacagacgtggcagcg
cgtggtttggatatttcaggtgtaactcatgtctataattacgatattccacaagatcct
gaaagttatgttcaccgtatcggtcgtacaggtcgtgctggtaaatcaggtcaatcgatt
acctttgttgctccaaacgaaatgggttaccttcaaattattgaaaacttgactaagaag
cgcatgaaaggtcttaaacctgcaagtgcagaagaagccttccaagctaagaaacaggtt
gcactcaagaaaatcgaacgtgattttgcagatgagacaatccgtggcaactttgagaaa
tttggtaaggatgctcgcaagttggctgctgaatttactccagaagaattggccatgtat
atcttgagtctgactgtccaagatccagatagccttcctgaagtggagattgcgcgtgaa
aaaccactgccatttaaaccatcaggtaatggcttcggtggtaaaggtaagggaggtcgt
cgtggagatgaccgtcgtgatcgcgaacgccgtggcaatggtcgccgtgatgatttcaaa
aacggcagtcgtggaaatgatcgttatgataaggaaaaacgttatcgtaaggataataaa
aaaccacgcaatacttcaagtgaaaagcaaacaggctttgttattcgtaacaagggcgat
aaataa
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