Scyliorhinus torazame (cloudy catshark): 140394079
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Entry
140394079 CDS
T11303
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
stoz Scyliorhinus torazame (cloudy catshark)
Pathway
stoz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
stoz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140394079 (cpsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stoz03021
]
140394079 (cpsf4)
03019 Messenger RNA biogenesis [BR:
stoz03019
]
140394079 (cpsf4)
Transcription machinery [BR:
stoz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
140394079 (cpsf4)
Messenger RNA biogenesis [BR:
stoz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
140394079 (cpsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_3
zf-CCCH_12
Torus
zf-CCCH_2
zf-CCHC
zf-CCCH_4
zf-CCCH_RBM22
zf-CCCH_DUS3L
zf-C3H1
Nab2-like_zf-CCCH_
Motif
Other DBs
NCBI-GeneID:
140394079
NCBI-ProteinID:
XP_072337007
LinkDB
All DBs
Position
17:113113203..113143079
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AA seq
272 aa
AA seq
DB search
MQELISTVEHIRFELEMAVEQQLGAQPLPFPGMDKSGAAVCEFFLRASCGKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTGVDQP
PLQQQQQILQKQNLTPFLQRSSSLVQIPSANILVGQQKSIPQSCGPMQQPQFQPMSNRGP
RPLEQVTCYKCGEKGHYANRCSKGHLAFLSGQ
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagctcatttccactgtggagcacatcaggttcgagctggagatggcggtggag
cagcagctcggagcgcagccgctgcctttccccgggatggacaagtctggggcagcggtc
tgtgaattctttctgagggcatcatgtggaaagggtgggatgtgcccctttcgccacatc
agtggcgagaagacggtggtgtgcaaacactggctgagggggctgtgcaagaaaggagat
cagtgtgaattcttacacgagtacgatatgaccaagatgcccgagtgctacttctattcc
aagtttggtgaatgtagtaacaaggaatgtccgtttctacacattgatcctgagtccaaa
atcaaagactgcccctggtacgaccgagggttttgtaaacatggccctctgtgcagacat
cgacacacacggcgagttatctgtgtaaattatctggtaggattctgccccgagggcccc
agctgtaaatttatgcatcctcgatttgagctgccaatgggtactggtgttgaccaacca
ccgttacaacaacagcaacaaatactccaaaagcaaaatcttaccccgtttcttcagcga
tcatcctctctggtacagattcccagtgccaatattctcgttgggcagcagaagtcaatt
ccacaatcttgtggaccaatgcagcaaccccagtttcagccaatgtcaaatcggggccca
agacctttggaacaagtcacatgttataagtgtggtgaaaaaggacattatgctaaccga
tgttccaaaggacacttggcatttcttagcggtcagtag
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