Scyliorhinus torazame (cloudy catshark): 140397018
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Entry
140397018 CDS
T11303
Symbol
usp39
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 39
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
stoz Scyliorhinus torazame (cloudy catshark)
Pathway
stoz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stoz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140397018 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
stoz03041
]
140397018 (usp39)
Spliceosome [BR:
stoz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
140397018 (usp39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
140397018
NCBI-ProteinID:
XP_072342152
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All DBs
Position
20:27309335..27352304
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AA seq
504 aa
AA seq
DB search
MAAVKRQLEAAESGDEAELELAASKIARIHSQEEEDDRSRHCPYLDTINRSVLDFDFEKL
CSVSLSHINAYACLVCGKYFQGRGLKSYANIHSVQVGHHVFLNLHTLKFYCLPDNYEIID
SSLEDITYVLKPTFTKQHIANLDKQSKLSRAYDGTTYLPGIVGLNNIKANDYANVVLQAL
SNVPPLRNYFLEEENYKDIKRPPGDIMFLLVQRFGELMRKLRNPRNFKAHVSPHEMLQAV
VLCSKKRFQITKQGDAVDFLSWFLNALHMALGGNKKKKTIINSVFQGSMRIFTKKLPPPD
LTPEEKEQLLEMEEFKESMTESTFLYLTLDLPTAPLYKDEKEQLIIPQVPLFNILAKFNG
VTEKEYKTYKENFLKRFQLTKLPPYLIFYIKRFTKNNFFIEKNPTIVNFPITNVDLREYL
SEEVQAIHKHTTYDLIGNVVHDGKPGEGAYRVHVLHHGTGKWYELQDLQVSDILPQMITL
SEAYIQIWKRREDSEDSVSSQKGA
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggtgaagcggcagctggaggcggcggaaagcggggacgaggccgagctggag
ctagcggcctcgaagattgcaagaattcattctcaggaagaggaagatgatcgaagcaga
cactgcccctatttagatacaatcaataggagcgtgctggattttgactttgaaaagctg
tgctcagtctctctatcccacatcaacgcctacgcttgcctggtgtgtggcaaatacttc
caaggacgaggcctgaagtcctacgccaacatacacagtgttcaggtcggacatcacgtc
tttctgaatctacatacgctgaagttttactgcctaccggacaattacgaaatcattgac
tcctcactcgaggacatcacgtatgtgctgaaaccaaccttcacaaagcaacacattgca
aacctggacaagcagtctaagctgtcgcgggcgtacgatggaaccacctatctgccagga
attgtcggactcaacaacatcaaggccaatgactacgctaatgtggtgcttcaggccttg
tcgaacgtgcctccgctgcggaactatttcttggaggaagaaaactacaaggacatcaag
cggcctcctggcgacatcatgttcctgctggtgcagaggtttggagagttgatgagaaaa
ctcaggaaccccaggaacttcaaggcgcacgtttccccgcatgagatgctgcaggcggta
gtcctgtgcagcaagaaacgtttccagattaccaaacaaggtgacgctgtcgactttctg
tcctggttcctaaatgcactccatatggcgttaggaggaaacaagaagaagaaaaccatc
atcaacagcgtgttccagggatccatgcggatattcacaaagaagttacctccaccagat
ctgacaccggaggagaaagagcaattgctggaaatggaggagttcaaggagtcgatgacc
gagtccactttcttgtacttgacacttgacctgcccaccgcccctctgtacaaagatgag
aaggagcagctgatcattccccaggtcccgctcttcaacatcctggcaaaattcaacggg
gtcacagagaaggaatataaaacctacaaggagaatttcctgaagaggttccagctgaca
aagctcccaccgtacctcatcttctacatcaagagattcacaaagaacaacttcttcata
gagaagaacccgaccattgtcaacttcccaatcaccaatgttgatctgagagaatacctg
tctgaggaggttcaggccatccacaaacacaccacctacgacctgattggtaatgtggtc
catgacgggaagccgggtgagggagcgtaccgggtccacgtgcttcaccatggcacagga
aagtggtacgagctgcaggatctacaagtatctgacatcttgccacaaatgatcaccctc
tctgaggcctacattcagatctggaagagacgtgaggacagtgaggacagtgtgtccagt
cagaaaggagcatga
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