Scyliorhinus torazame (cloudy catshark): 140398514
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Entry
140398514 CDS
T11303
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
stoz Scyliorhinus torazame (cloudy catshark)
Pathway
stoz03030
DNA replication
stoz03410
Base excision repair
stoz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stoz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
140398514 (pole)
03410 Base excision repair
140398514 (pole)
03420 Nucleotide excision repair
140398514 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stoz03032
]
140398514 (pole)
03400 DNA repair and recombination proteins [BR:
stoz03400
]
140398514 (pole)
Enzymes [BR:
stoz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
140398514 (pole)
DNA replication proteins [BR:
stoz03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
140398514 (pole)
DNA repair and recombination proteins [BR:
stoz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
140398514 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
APP_N
Motif
Other DBs
NCBI-GeneID:
140398514
NCBI-ProteinID:
XP_072343423
LinkDB
All DBs
Position
1:complement(37766582..37971372)
Genome browser
AA seq
2283 aa
AA seq
DB search
MVLQNSGRLRAQRGQAAADNNYSDDGSSLPALKRLERSQLSDEMDARFGFDRLKDPGEKT
GWLINMHPAEILDEDKRMISAVDYYFIEEDGSRFKVALPFNPYFYVATKKGCEREVSSFL
SKKFQGKISKLSTIPKEDLDLPNHLVGLKRLYIKLAFNTVDDLIKVRKEISPAVRKNKER
EKSNDAYTVMLSSALAGGNVTEEEGTSKKISDQMENIIDIREYDVPYHVRVSIDLKIQVA
HWYNIRIRGGVYPPEIIRRDDLVERPDPVVLAFDIETTKLPLKFPDAENDQIMMISYMID
GQGYLITNREIVSEDIEDFEFTPKPEYEGPFCVFNEPDEVSLIRRWFEQVQETKPNILVT
YNGDSFDWPFVETRAAVHGLNMYQEIGFQKDSQDEFKASQSIHMDCYRWVKRDSYLPVGS
QNLKAAAKAKLGYDPVELDPEDMCRMATEEPQTLATYSVSDAVATYYMYMKYVHPFIFAL
CTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIIFPNKQEQVFNKLTSDGHVLDSETYVG
GHVEALESGVFRSDIPCRFKMNPAAFDFLLQRVEHTMRHAIEEEEKVPMEQVTNFQEVCD
EIKKKLNCLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAIVDEAICAACDFNKPGA
HCQRKMTWTWRGEFMPASRSEYHRIQQQLESEKFPPAFPNGRPQAFHELSREEQAKYEKK
RLADYCRKAYKKIHITKIEERVTTICQRENSFYVDTVRAFRDRRYEFKGSHKVWKKKLSA
AVESGDATEIKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCHTGAN
IIKQARELIEQIGRPLELDTDGIWCVIPNSFPENFVVKSSNAKKSKITISYPGAMLNILV
KERFTNEQYQELVDPATLTFVTRLENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFNE
DGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVAKVADYWLDVLYSKA
ANMPDLELFELISENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRFVIS
KKPEGSPVTERAIPLAIFQAEPSVKKHYLRKWLKSPSLQDLDIRLILDWDYYIERLGSAI
QKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDVYKQKKINELFTNAGVRQVTSNQHP
DRQSEIGDLEDFGVSKCRVQPIIPISTKRRRGMNEESQEVSQDLELTQSWREILGPPPPL
GATKNERIVWLRYQKKKWELQSKQRQARRKRRKLDDGVAAPGRPIRDGPKTSLSSFLRRT
ARTILDMPWQIVQIAETSQPGCFKLWAVVGNDLHCIKLNIPRVFYVNQRIPKADDSAVYK
KVNRILPRSNIVYNLYEYSVPEDMYQEHINEINADLSAPDIEGVYETQVPLLFRALVQLG
CVCMVNRQLSLYLAGREAETFELEQLEMRSLAQFNYLEPGSIRHMYFYHNAQGNKALFGL
FIPSQRKASIFVLDTVRSNQMPNLNNVYAAERTAMLEKLNEELLPPDKHTFEVRAEKDPK
LVYRAIQRLLLSYKDEKRGPTLIAVQSKWDLKRLKNGMPVLDEFPMVPVHVNDDISYGVL
DWQRHGVRRMIRHYLSLDSILSKAFEMARYYHIPIGNLPDDISTFGSDLFFSRHLRRHNH
LLWLSPTSRPDLGGKEADDNRLVMEFDERSTVEINNPGCYSTVSVELDIQSLAVNTILQS
HHINDMEGASSIGVSFDVIQQASLEDMMAGNQAANALASYDEAALCSNTFRILKSMVVGW
VKEITHYQNVYADNQVMHFYRWLRSPSSLLYDPALHRILHNMMKKLFLQLVAEFKRLGSS
VIYANFNRIMLCTKKRRTEDSIGYVEYITKSIHSREIFHSLSISLSRCWEFLLWMDPANY
GGIKGKPPSSILNEEVGNAKETKEHGEEGSNDDVEEIHSEDEERGTDVEDLLDNTWNIMH
YLPQASSCQSYFLMIVSAYIVAVYHSMKEELRRNAPGCTPIKRRGASQISQEPAGETGAS
AGMITFSQEYVSNELTQNFFTITQKIQKKVSGNRHSTEPSEMFPVLPGSYLPFNNPALEF
IKSVCKILSLDSNITNQVNKLKRDLLRLIDVGEFSEEAQFKDPCQSYILPEIICKNCNFC
HDLDLCKDPSILQEDGTILPKWCCSNCQTEYDSDSIEMELVEALKKKMMAYTLQDLICLK
CKGIKEANMPIYCSCARDFDLTISMKGFMGQIQVFRNIARHYNMPFLLETVDWMFRMNTY
LKP
NT seq
6852 nt
NT seq
+upstream
nt +downstream
nt
atggtgttgcagaacagtggccggctgagagcccagcgagggcaggccgccgccgacaac
aactactctgatgatggctcctcccttcctgcactcaagcgcctggagcgcagtcagttg
tcagatgagatggatgcaaggtttgggtttgaccgactcaaggatccaggcgagaagact
ggctggcttatcaacatgcacccagcagaaatcctggatgaagacaagagaatgatcagt
gctgtggattattattttatagaggaggatgggagcaggtttaaggttgctctgcctttc
aacccttatttctatgttgccacaaaaaagggctgtgagcgtgaggtttcatcattcttg
tccaagaaatttcaaggcaaaataagtaaactatcaaccattccaaaagaggacttggat
ctgcctaaccacttagttggcttgaagagactctatattaagctcgcctttaatacagtt
gatgacttgataaaagtccgaaaagagatttcgccagctgtaaggaaaaacaaagaaagg
gagaaatcaaatgatgcctatactgttatgttgtccagtgccttggccgggggcaatgtt
actgaagaggaaggaacatccaaaaaaatttctgatcaaatggaaaacataattgacatc
cgggaatacgatgtaccctatcatgttcgagtatccattgatctgaagattcaagtggca
cattggtacaatatacgaattcgtggtggtgtctatcctcctgagattatacgtagggac
gacttggttgagcgaccagatcctgtcgttttggcatttgacattgaaactacaaaattg
ccattgaaatttccagatgctgaaaatgatcagatcatgatgatttcctacatgattgat
ggacagggatatttgataacaaaccgggaaattgtatctgaagatattgaggattttgag
tttacaccaaagccagaatatgagggccctttctgtgtatttaatgaaccagatgaggtg
agcttaattcgaagatggtttgaacaagtccaggaaactaaacctaacatacttgtgacg
tataacggtgactcttttgattggccatttgtggagacacgagctgcggtgcatggcttg
aacatgtaccaagagattggctttcagaaggacagtcaggacgagttcaaagcgagtcag
agcattcacatggactgctacaggtgggtgaagcgagatagttatctccctgtgggtagt
caaaacttgaaggctgcagctaaggccaaactgggatatgacccagtggagttggacccc
gaagatatgtgtcgaatggccactgaggaaccacagaccttggccacatattcagtctct
gatgctgtggctacctattacatgtacatgaagtacgtgcaccccttcatttttgctttg
tgtacgatcatccctatggagcctgatgaggtgctacgaaaaggatctgggacactttgt
gaggcactcctgatggtacaggcttttcacgccaacataatcttcccgaacaagcaagaa
caagtctttaataagctaacaagtgatggtcacgtgcttgattcggaaacttatgtagga
ggacatgtggaggctttggaatcgggagtttttcgcagtgacataccatgccgatttaaa
atgaacccagcagcatttgatttcttgctgcaacgagtggaacacaccatgcgacatgcc
attgaggaggaggagaaagttcccatggagcaggttaccaatttccaagaggtctgtgat
gagattaaaaagaaactgaactgtttgaaggaagttccaaacaggattgaatgtccgctc
atttaccatttggatgttggggcaatgtacccgaacatcattctgaccaaccgtttacag
ccttctgctatagtggatgaagccatctgtgcagcctgtgatttcaacaaaccaggtgca
cactgtcagcgcaagatgacctggacatggcgaggagagtttatgccagcctcgcgcagt
gagtatcatcgtattcaacagcagcttgaatctgagaagtttcctcctgcttttccaaat
ggacggccacaagctttccatgagctatcccgtgaagagcaggccaagtatgaaaagaag
cgactggcagactattgccgcaaagcttacaagaaaatccacatcactaagattgaggaa
cgcgtaacaacaatttgtcaacgtgaaaattctttctatgtggatacagtccgagctttc
cgtgaccggcggtatgaatttaaaggctcacacaaggtatggaagaagaagctgtcagct
gccgttgaaagtggagatgctacagaaatcaagcgttgtaaaaacatggagatcttgtat
gagtccctgcagctggcccacaagtgtattctaaactccttctatggctatgtcatgcgc
aaaggggctcgttggtattctatggaaatggctgggattgtctgtcacactggagctaat
attatcaaacaggccagagagttgatcgaacaaattgggcgacccttggagctggacact
gatggtatttggtgtgtcattcctaattctttcccagagaactttgtcgtcaagtcaagc
aatgctaagaagtcaaagattacaatctcctaccctggtgctatgcttaatatcctggtg
aaggagcgattcaccaatgaacaataccaggagcttgtggaccctgcaacattgaccttt
gtcacccgcttagaaaacagcatcttttttgaggttgatggcccttatctggccatgatt
ctgccagcttccaaagaggaaggaaagaaactcaaaaaaagatatgctgtatttaatgag
gatggttcactggctgaactaaaaggctttgaagtgaagcgccgtggggaattgcagctc
atcaagatttttcagtcttctgtcttcgaggcctttctgaaaggcaccacgctggaagaa
gtgtatgcatctgttgccaaggttgcagattactggttggatgtactatacagcaaggca
gctaacatgcctgacttggagctgtttgaattgatctctgagaatcgatcgatgtcccgt
aaattagaggattatggagaacaaaagtctacctccataagcacggccaaaaggctcgcc
gaatttcttggggatcaaatggtgaaggacgcagggctcagttgccgttttgtcatttcc
aagaaaccagagggatccccagtcactgaaagagcaattccactggccattttccaggca
gaaccaagtgttaaaaagcactatctaaggaagtggttgaagagtccttccttacaggac
ctggacattcgattaattttggactgggattattacattgagcgacttggcagcgccatc
cagaagattatcaccattcctgcagcccttcagcaggtgaagaatccagtcccacgggtc
cgacatcctgactggcttcacaagaaactgttagaaaaaaatgatgtttacaaacaaaag
aaaattaatgagctcttcactaacgctggagtcaggcaggtgacatccaatcagcatccc
gaccgacaatccgagattggtgatctggaagattttggagtctccaaatgtagagtacag
ccaattatccccatcagcacaaagagaaggcgtggtatgaatgaagagagtcaggaggta
tctcaagacttggaattaactcagtcttggagagaaatattgggacctccaccgccactg
ggagctacaaagaatgaacgcatagtgtggctgagataccaaaagaagaaatgggagctg
caatcaaaacaaaggcaggcccgcagaaagaggagaaagcttgatgatggtgttgctgca
ccaggtagacctattcgagatggtccaaaaactagcctcagcagctttttgcgccgaacg
gcccgtaccattctagatatgccatggcaaattgtgcagattgcagaaacaagtcagcct
ggctgcttcaagctatgggctgttgttggtaatgatttacattgcatcaaactcaacatc
ccgcgagtgttctacgtcaatcagcgcatcccgaaagcagatgatagtgctgtttacaag
aaggttaaccgtatccttcctcggtccaatattgtttacaacctatatgaatattccgtg
ccggaagacatgtaccaagagcacatcaatgagattaatgctgacctctctgctccagac
attgagggagtctatgaaacacaggttcctctgctctttcgtgccctcgttcaacttgga
tgcgtctgtatggtcaataggcagttatcactctatcttgcaggacgggaagcagaaacc
tttgaattggagcaactggaaatgcgctcattagcacaatttaattatctggaaccaggt
agcatccgacacatgtacttctatcacaatgctcaaggaaataaggctctatttggcctg
ttcatcccttctcaacggaaggcctccatatttgttcttgacactgtacgcagtaatcag
atgccaaacttgaataacgtgtacgcagctgagcgcactgctatgctggagaaattgaat
gaagaactactgccacctgataagcacacatttgaagttcgggcagaaaaggacccaaag
ttagtctacagagcaattcaacgccttctgttgagctacaaggatgaaaaaagaggtcca
actcttattgctgtacaatcaaagtgggacctgaagaggctgaaaaacggaatgccagtt
ctggatgagtttccgatggtgcctgttcatgtaaatgatgatatcagctatggtgtattg
gattggcagcgtcatggtgttcgtagaatgatcagacactacctcagcctggatagcatt
ttgtccaaagcatttgagatggccagatattaccacattcccattggaaatcttccagat
gacatctcaacctttggatcagatctcttcttttccagacatcttagacggcacaaccat
ctcttgtggctttccccaacatctcggcctgatctgggagggaaagaggcagacgataat
cgtctggtgatggagtttgacgagaggtcaacagttgagattaataatccagggtgttac
tctacagtttctgtggaactggatattcagagcttggctgtgaatactatccttcagtcc
catcacattaacgatatggaaggagcatccagtattggtgtcagctttgatgttatccag
caagcttcactcgaagacatgatggctggtaaccaagcagctaatgcacttgccagctat
gatgaggcagcgttgtgctccaacacattcagaattttgaaaagtatggttgttggctgg
gtgaaggagatcacccactatcagaatgtgtatgctgataaccaagtgatgcacttttac
cgttggctgcgatcaccctcatcactgctgtatgaccctgcactgcaccgtattctccac
aatatgatgaagaagctgtttctgcagctggtagcagagtttaaaaggttgggttcatct
gtgatctatgccaatttcaaccgtataatgctgtgcaccaagaagcgacggactgaggat
tcaataggatatgtggaatacatcacaaagagcattcattcccgtgagattttccactcc
ctctccatctcgctttctcgctgctgggagtttctgctttggatggacccagccaattac
ggtggcattaagggtaaacctccctccagcattctcaacgaagaggtgggaaatgctaaa
gaaacaaaggaacatggtgaagagggcagcaacgatgatgttgaagagattcattctgaa
gatgaggaacgtggcaccgatgttgaagatcttttggacaatacctggaatattatgcat
tatctgccacaagcatcctcttgtcagagctacttcctcatgattgtctcagcttatatt
gtagctgtataccacagcatgaaggaggaattgagacgcaatgctccaggatgtactcct
ataaaacgacgaggagccagccagatctctcaggagccagcgggagaaactggtgcttca
gcaggaatgatcaccttctctcaagagtatgtatctaatgagctcacacaaaactttttc
acgatcactcagaagattcagaagaaggtaagcggcaacaggcattccactgaaccctcc
gagatgttcccagttctgccaggttcctaccttccattcaacaacccagcactggaattc
atcaaatcggtctgtaagatattgtctctggattcgaacataactaaccaggtgaataag
ttgaaacgggatcttctacgtctaattgatgtgggggaattctctgaagaagctcagttt
aaagacccctgccagtcctacatactacctgagattatctgcaaaaactgcaacttttgc
catgatctggacctttgtaaagacccttccatcttgcaggaggatggcactatattacct
aagtggtgctgttctaattgccagactgaatatgactcagattccatagaaatggaatta
gtagaagcactgaagaagaaaatgatggcctatacgcttcaggatttgatttgtttaaaa
tgtaagggcatcaaagaagccaacatgccgatttattgtagttgtgcccgggacttcgat
ttgaccatttcaatgaagggatttatggggcaaatccaagtgttcagaaatattgccaga
cactacaacatgcccttccttttggagactgttgattggatgttcaggatgaatacatac
ttgaagccatga
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integrated database retrieval system
