Scyliorhinus torazame (cloudy catshark): 140399046
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Entry
140399046 CDS
T11303
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1 isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
stoz Scyliorhinus torazame (cloudy catshark)
Pathway
stoz04020
Calcium signaling pathway
stoz04080
Neuroactive ligand-receptor interaction
stoz04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
stoz00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
140399046
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
140399046
04082 Neuroactive ligand signaling
140399046
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
stoz04040
]
140399046
Ion channels [BR:
stoz04040
]
Ligand-gated channels
Glutamate (ionotropic)
140399046
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
Rap-GAP_dimer
DUF6724
Motif
Other DBs
NCBI-GeneID:
140399046
NCBI-ProteinID:
XP_072344225
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Position
22:complement(42870683..43241626)
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AA seq
942 aa
AA seq
DB search
MQHRLPLLLTFMVLFPVQSQTAPKVVNIGAVLSTKKTENIFREAVAKANRKHGTFKIQLN
ATAVTHKPNAIQMALAVCEDLISSQVYAILVSHPPGPSDHLTPTPVSYTAGFYRIPVIGL
TTRMSIYSDKSIHLSFLRTVPPYSHQAQVWFEMMRRFRWGHIILVVSNDHEGRAAQKKLE
TLLEEKESKNKKRNFENNDQHSYDSRRGPKAEKVLQFEPGTTNMTSMLLEAKELEARVII
LSANEDDAVTMFKTATLLNMTGPGYVWLVGEREISGRAMQHVPEGVIGLQLIDGKNESAH
INDAVGIVAQSIHELFEKENITDPPKGCVGNTNIWKTGPLFKRVLLSTKYREGFTGQVEF
NDEGDRKFSNYSIVNVQKGKLVQIGVYNGSNVLLNDKKIIWPGGELNTPKGFQMSTRLKI
VSIYQEPFVYVKPTLPDGTCEEQITISGDPIKKVICTGPNATVPGRPIVPQCCYGFCIDL
LIKLASTPALNFTYEVHLVQDGKFGTQERVNNSNKKEWNGMMGELLSGLGDMIVAPLTIN
NERAHYIEFSKPYKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLL
DRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFA
MIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELS
TMYRHMEKHNYENAADAIQAVRDGKLHAFIWDSAVLEFEASQKCDLITTGELFFRSGFGI
GMRKDSPWKQAVSLAILSFHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLV
AGGIVAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQDRKNGSAEPDPKKKAPF
RSLTSTLTSSFKRRRSSKDTQYHPTDISGQLNLSDPSVSTVV
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgcagcatcgcctcccgctcctgctcaccttcatggtcctgttcccggtgcaatcccag
acggcgcccaaagtggtgaacatcggagcggtgctgagcaccaagaagacggagaatatc
ttccgggaggcggtagcaaaggccaaccgtaaacacggaaccttcaaaatccaactcaat
gccacggccgtcactcacaaacccaacgccatccaaatggccctggcagtgtgtgaggac
ctcatcagcagccaggtgtacgcgatattggtgagtcacccacctggccctagtgaccac
ctcaccccaactcccgtatcttacacggctggcttctaccgaatacccgtgattggcttg
accacacgtatgtcaatatattctgacaagagtatccatctctcctttctgcgcactgtg
ccaccatactcccatcaagctcaggtctggtttgaaatgatgaggcgattccgctgggga
cacatcattctggtggtgagcaatgaccatgagggccgggcagcccagaagaagctggag
actctcctggaagaaaaggagtcaaagaataaaaaaaggaactttgaaaacaacgaccaa
cattcgtatgacagcaggcgaggaccaaaggctgagaaggtcctccagtttgaacctggc
acgacaaacatgacatcaatgctgctcgaagccaaggagttggaggcaagagtcatcatc
ctgtccgccaatgaagatgacgctgtaacaatgttcaagactgcaacactcctgaatatg
acggggcctggctatgtttggcttgttggagagagagagatatctggcagggccatgcaa
catgttccagaaggtgtaattggcttgcaattgattgatggtaaaaatgaaagtgctcac
attaatgatgcggtgggtatcgtggcacaatccatccatgaactctttgagaaggaaaac
atcaccgaccctcccaaaggctgtgtggggaacaccaacatctggaaaactggaccgctg
tttaaaagggttttgttgtccacaaaatatcgcgaagggttcacagggcaagtggaattt
aacgatgaaggagatcgaaagttttctaactacagcattgtcaacgtgcaaaaagggaag
ctggtgcaaattggagtgtacaacggctcaaatgttctgctgaatgacaagaaaattatc
tggccaggaggagaattaaacacccccaaaggctttcagatgtcaacgagattaaagatt
gtcagtatttaccaggaaccttttgtatacgtaaagccaacattaccggatggaacatgt
gaagaacagattacgattagtggtgaccccattaaaaaagtgatctgtacggggcccaat
gcaactgtgccaggtcgccccattgtccctcagtgctgctatggattctgtattgatttg
ctcatcaagcttgccagcactcctgcgttgaactttacctacgaggttcaccttgtgcag
gatgggaagtttgggacacaggagcgagtgaataacagcaataagaaggaatggaacggg
atgatgggggagctgctgagtgggctcggtgacatgattgtcgcccctctcaccatcaat
aatgagcgtgctcattatattgaattctccaaaccatacaagtaccaaggactcaccatt
ctagtgaagaaggaaattcctcgcagcaccctggattcattcatgcagccgtttcagagt
acactgtggctgctggtgggcctatctgttcatgtggtcgctgtgatgctttatctcttg
gatagattcagtccttttgggagatttaaagtgaacagtgaggaggaggaggaagatgca
ctgaccctgtcctcagccatgtggttctcctggggcgtactcctgaattctgggattgga
gaaggggctccgagaagtttctctgctcgaatcctgggcatggtttgggctggatttgct
atgattattgttgcctcatacactgccaacctggcagctttcctggtgttggacagaccc
gaggagcggatcaccggaatcaacgatcccaggcttcgaaatccttccgacaagtttatc
tatgctacagtgaagcagagttctgtggatatctacttccggcggcaggtagagctgagc
accatgtatcgtcacatggagaaacacaattacgagaatgcagctgatgctatccaggct
gtacgagatggcaaattgcatgcattcatctgggactcggctgttctggagttcgaagcc
tcgcagaagtgtgatctcatcaccacaggagaactgttcttccgatcgggatttggcatt
gggatgcgcaaggacagtccatggaaacaggctgtctcactcgctatattgagtttccat
gagaatggctttatggaggacctggacaagacctgggttagatatcaggaatgtgactct
cgtagcaatgctccagccactctgacctttgaaaacatggcaggtgtctttatgttggtt
gctggagggattgttgcaggaatattcttgatattcattgagattgcttacaagcgtcac
aaagatgctcgaaggaagcagatgcagctggctttcgctgcagtcaatgtctggagaaag
aatctgcaggatagaaaaaatggtagcgcagagcctgaccctaaaaagaaagcacctttt
agatcgctcacttcaacactgacctccagcttcaagagacgtaggtcttccaaagacacg
caataccacccgactgacataagcgggcaactgaatctctcagacccctctgtcagcact
gtggtgtaa
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