Scyliorhinus torazame (cloudy catshark): 140403284
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Entry
140403284 CDS
T11303
Symbol
smarca4a
Name
(RefSeq) SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4a isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
stoz Scyliorhinus torazame (cloudy catshark)
Pathway
stoz03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
stoz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
140403284 (smarca4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stoz03021
]
140403284 (smarca4a)
03036 Chromosome and associated proteins [BR:
stoz03036
]
140403284 (smarca4a)
Transcription machinery [BR:
stoz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
140403284 (smarca4a)
Chromosome and associated proteins [BR:
stoz03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
140403284 (smarca4a)
Chromatin remodeling factors
BAF complex
140403284 (smarca4a)
PBAF complex
140403284 (smarca4a)
GBAF(ncBAF) complex
140403284 (smarca4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
140403284
NCBI-ProteinID:
XP_072347181
LinkDB
All DBs
Position
27:20571015..20767274
Genome browser
AA seq
1636 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGSMLGPSPGPSPGSAHSMMGPSPGPPSAGHSMTPQG
PGGYPAESIHQLHKAMESMHEKVMPDDPRYSQMKSIGMRPGGHSGMGPPPSPMDQHSQGY
PSPLGSAEHAPSPVPANGPSSGPPMSAGPGGVPMDGGDPQTLGQQNRGPSPFNQGQLHQL
RAQIMAYKMLARGQPIPDHLQLAVQGKRPPPGMQQQMSSLPPPSTPGTGPAPGPAPGNYN
RPLGMGGSNMMPPGSAGVNQGMQCQPPGGPSKPWPEGPMANATTPTSVPQKLAPPQPTGR
PSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVQHHQKQNRITPIQKPRGLDPVELLQER
EYRLQARISHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRRDTAL
ETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYH
RSVSGKMQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDRRL
AYLLQQTDEYVANLTELVRQHKAAQAAKEKKKKKKKKKQENVDGLGSAVGPDGELLDETS
QMSDLPVKVIHVESGRILTGAEAPKAGQLDTWLEMNPGYEVAPRSDSEESGSEEEEEDTT
DWRLLIMSEDRSRSGLLEEEEEEQAAPPAQTPAPEEKKKIQDPDSEEVSELDARQIIENA
KQDVDDEYSAPLSSIRGLQSYYAVAHAVTERVDIQSTLLVNGLLKQYQVKGLEWLVSLYN
NNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVS
RISYKGSPAARRAFVPLLRSGKFNVLLTTYEYIIKDKHVLAKIRWKYMIVDEGHRMKNHH
CKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCNTFEQWFNAPFAMT
GEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRH
MQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQQIEESFSEHLGFTGGIV
QGADLYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFSYRSFKYLRLDGTT
KSDDRGMLLKTFNEPNSHYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRA
HRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAI
LEHEEQDESEVVAAEVKGSEGHTEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEA
RNPKRKPRLMEEDELPNWILKDDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTEKQW
LKAIEEGNLEEIEEEVRQKKARKRKRDVDPPIVMATTSTRSRDKDDDEKKKKKRGRPPAE
KLSPNPPNLTKKMKKTVEAVIKYKDSSTGRQLSEVFIQLPSRKELPEYYELIRKPVDFRK
IKERIRNHKYRSLNDLERDVMLLCQNAQTYNLEGSLIYEDSIVLQSVFTSVRQKIEKEED
SEDDSEEGEEEEEEGSESESRSVKVKIKLGRKEKSQDRVKGRKRSSRTSKSKPVVSDDDT
EEEVDEERSGTGSEED
NT seq
4911 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactccggatcctccaatgggaggcactcctcgcccgggcccatcaccaggacct
ggaccttctcctgggtcaatgctaggccccagtcctggaccctcgcctggctctgcacac
agtatgatgggaccaagcccaggtcccccatctgccggccattccatgactccacagggg
cctggaggttaccctgcagaaagcatacatcaacttcataaggcaatggaatcgatgcat
gaaaaggtgatgcccgatgacccgcgttacagtcagatgaaatctattggcatgaggcca
ggcggacacagtggtatgggaccaccgcccagccccatggaccagcattcacaaggttac
ccttctcctcttggaagtgctgagcatgccccaagtccagtacctgctaatggcccttct
tcaggaccccctatgtccgctggaccaggtggcgttcctatggatggcggggacccccag
accctgggacagcaaaaccgaggaccctctcctttcaaccaggggcagctgcatcaactg
cgagcacagatcatggcatataagatgctggcgagaggccagcccattccagaccacctg
cagttggctgtccaagggaagagacccccgcctggaatgcagcagcagatgtcatcacta
cctccaccctccacccctggaactggaccagctccaggcccagcacctgggaactacaac
aggccactcggtatgggaggatccaacatgatgcctccaggatctgctggagtcaatcag
ggaatgcagtgtcagcctcctggtggcccctcaaaaccctggccagaaggtccgatggcc
aatgccactactccaaccagtgtcccacagaaactggcaccccctcagcccactggtcga
ccttccccagcaccaccagccgtgccccctgccgcctccccagtgatgcctccacagact
cagtcaccaggtcagccggctcagccagcccctatggtgcagcaccatcagaaacagaac
aggatcactcccattcagaaaccacgggggctggacccagttgagcttctccaggaacgg
gaataccggctgcaagcacgcatttctcatcggatccaagagctggagaacctccctggc
tcactcgcaggagaccttcgcaccaaagcaaccattgaactcaaggccctgcgactcctt
aattttcaaaggcagctccgtcaggaagtggtggtgtgtatgaggagggacacagccctc
gagacggcactgaatgcgaaagcttacaaacgcagcaagcggcagtcactccgcgaggca
cgcatcactgagaaactcgagaagcagcagaagattgagcaagaacgcaagcgcagacag
aaacaccaggaatacctcaacagcatcctgcaacatgccaaggacttcaaggaatatcac
cggtcagtttcagggaaaatgcagaaactgacgaaagcagtggccacgtatcacgccaac
actgagcgcgagcagaagaaggagaatgagcgaatcgagaaggagagaatgaggaggctg
atggcagaagatgaagaaggctatcgaaagctgattgaccagaagaaagaccggcgcctg
gcctacctgctgcagcaaacggatgaatacgtggccaatctgacagaactcgtccgacag
cacaaggcagcgcaggctgcgaaagagaaaaagaagaaaaagaagaagaagaagcaggaa
aatgtggacggattgggttctgctgttgggcctgatggtgagctcttggatgagaccagc
cagatgagcgatttgccagtgaaagtcattcacgtagagagtggccggattctgactggt
gccgaggcaccgaaggctgggcagctggacacctggttggaaatgaatcccgggtatgag
gtggctccacgctctgacagtgaagagagtggctctgaggaagaggaagaggatacgaca
gactggaggctgctaataatgtcggaggacaggtctcgttcgggactcctggaggaggaa
gaggaggagcaggcagccccaccagcacagactcctgcacctgaggagaagaagaaaatc
caggacccagacagtgaagaagtgtctgagctagatgcaaggcaaatcatagagaatgct
aaacaggacgtggatgatgagtacagtgcaccgttatctagtatacgtggtctgcaatcc
tattatgcagtggctcatgcagtgacggagagggtggatattcagtctacgctgctcgtg
aatggtttactcaagcagtatcaggttaaaggtttggagtggctcgtctcgctgtacaac
aacaacctaaatggaatcctcgctgatgaaatgggcctgggaaagaccattcagaccatc
gccctcatcacatacctcatggaacacaagcgcatcaatggacccttcctcattatagta
cctctctcaacgctatcaaattgggcctatgagtttgataagtgggcaccatcagtctca
cggatctcatacaagggttctcctgcagctcgaagggcctttgttcctctgcttagaagt
gggaagttcaacgtcctactcaccacctatgaatatatcatcaaagacaagcatgttctt
gccaagatccgttggaagtacatgatagtggatgagggtcaccggatgaagaatcaccac
tgtaaactaacacaagtgctgaatacacattacgtagcaccacgccgcctgttgctcact
ggcaccccactgcagaacaagctgcccgagctgtgggcactcctcaacttcctgctgccc
actattttcaaaagctgcaacacattcgagcagtggttcaacgccccctttgccatgaca
ggagaaaaggtggatctaaatgaagaggagactattctgattatcagacgcttgcacaag
gttctccgccctttcctgttgaggcgattgaaaaaggaagtcgaagctcagctgcctgag
aaggtggaatacgtcattaaatgcgacatgtcagctttgcagagggtcctgtaccgccac
atgcaggccaagggagtgctgctgaccgatggctcagagaaggacaaaaagggcaaggga
ggcactaagacactgatgaacacaatcatgcaactgagaaaaatttgcaaccacccgtac
atgttccagcaaatcgaggagtctttttcggaacatttgggatttactggaggcatcgta
caaggggctgatctttaccgagcttcaggaaagttcgaactgctggacaggattctcccc
aagttgcgagccaccaatcatagggtgctactcttctgccagatgacctcactgatgact
atcatggaagactacttctcataccgcagcttcaagtacctccgactggacgggaccact
aagtctgacgaccgtgggatgctgctaaagacattcaatgagcccaactcccactacttc
atcttcctgctcagcactcgggccgggggcctaggcctgaatctccaggctgcagacacc
gttgtcatcttcgacagcgactggaaccctcatcaagacttacaagctcaggatcgcgct
caccgtatcggacagcaaaatgaagtgcgcgtgctgcgcctgtgcaccgtgaacagtgtg
gaagagaagattctggcagcggccaaatacaagctgaatgtggaccagaaggtcatccag
gctggaatgttcgatcagaagtcctccagccatgagaggcgggcatttctgcaggccata
ctggaacacgaggagcaagacgaatctgaggttgtggcagcggaggtgaaaggatcggaa
ggacatactgaagaagatgaggttccagatgatgagacggtgaatcagatgatagccaga
cacgaagaggaatttgatctcttcatgcggatggatttggaccgtcgtcgggaggaggcc
aggaacccaaagcggaaaccacgtttgatggaagaagacgagcttccaaactggatcttg
aaagacgatgctgaggtggagaggctgacgtgcgaggaggaggaggagaaaatgtttggc
cgaggctcgcggcagcggaaggaagtggactacagcgactccttaaccgagaaacagtgg
ctcaaggccatagaagagggcaaccttgaggagattgaagaagaggttcgtcagaaaaaa
gcccgcaagcggaagagagatgttgacccgcccattgttatggcgaccaccagtacacgc
agccgggacaaggacgatgacgagaagaagaagaagaaacgtggccggccgccagcagaa
aaactatcgccaaaccccccaaacctcacaaaaaaaatgaagaaaactgtggaggcggtg
atcaaatacaaggacagcagtactggccgacagctcagcgaagtcttcattcaacttcca
tctcgcaaggagcttccagagtactatgaactcatccgcaaacccgtcgacttccggaaa
atcaaggagcggatccgtaatcacaagtaccgcagtctcaatgacctggaaagagatgtg
atgttgctgtgtcagaatgcacagacctacaacctggagggatcactgatctatgaggat
tcgattgtgcttcaatctgttttcaccagtgtgcggcagaaaatcgagaaggaagaagac
agcgaagatgatagtgaggaaggagaggaggaggaagaggaaggatcggaatcagaatct
cgttcagtgaaagtgaagattaagctaggccggaaggagaagagccaggatcgagtgaaa
gggcgcaaacgctccagccgtacctcgaaatccaaacccgttgtaagcgacgatgacacg
gaggaggaagtggatgaggaacggtcaggaactggtagcgaagaagattaa
DBGET
integrated database retrieval system
