Scyliorhinus torazame (cloudy catshark): 140403963
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Entry
140403963 CDS
T11303
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
stoz Scyliorhinus torazame (cloudy catshark)
Pathway
stoz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
stoz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140403963 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stoz03019
]
140403963 (cpsf2)
Messenger RNA biogenesis [BR:
stoz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
140403963 (cpsf2)
U7-dependent histone pre-mRNA processing factors
140403963 (cpsf2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
140403963
NCBI-ProteinID:
XP_072348363
LinkDB
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Position
2:359460421..359490056
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AA seq
785 aa
AA seq
DB search
MTSIIKLTTISGVQEESALCYMLQVDEFRFLLDCGWDESFSMDIIDALKKYVHLVDAILL
SHPDPLHLGALPYAVGRLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEEFSLFTLDDVD
AAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMISRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIALDTA
GRVLELAQLLDQIWRTKDAGLSVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLSDLARVPSPKVVLSSQSDMECGFSRDLFIQWCQDPKNSVILTYRTT
PGTLARYLIDNPITKKMDIEIRRRVKLEGKELEEYLEKEKLKKEAAKKQEQEKERDVDSS
DESDIEEDMDQPLTGKTKHDLMMKSESSRKGSFFKQAKKSYPMFPATEERMKWDEYGEII
RAEDFLVPELQAAEEEKSKLDSGLSNGEEPMDQDLSDVPTKCISALETIEIRARVTYIDY
EGRSDGDSIKKIINQMKPRQLIIVHGPPESSQDLAESCKAFGGKDIKVYTPKLQETIDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVAKVDTGVVLEEGELREDEEGE
MQVDAPSTTHSSEQVAAQQKTMKSLFDDDEKETNEDLDVIPTLEPLSANEVPGHQAVFIN
EPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRRTETGRIGLEGCLCEDYYKIRDLLYE
QYAIV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgatcatcaaactgaccaccatttctggagtccaggaggaatctgccctttgc
tatatgctgcaggtggatgaattccgctttcttcttgattgtggctgggatgaaagtttc
tccatggatataattgatgcactaaaaaaatatgttcatttggttgacgcaatcctactt
tctcacccggatcccttacacctgggagctctcccttatgctgttgggaggctgggttta
aactgtgcaatttatgccacaattcctgtttacaagatggggcagatgtttatgtacgat
ctctatcagtcacggcacaacacagaagagttctccctgtttactttggatgatgtggat
gcagcattcgacaagattcagcaactgaaatattcccagattgtcaatttaaaaggtaaa
ggacacggcctatccataactcctttgcctgcaggtcacatgattggaggaacaatttgg
aagattgtgaaagatggagaagaggaaattgtgtatgcagttgactttaaccataagcga
gaaatccatctgaatggatgttcgctggaaatgattagccgaccctcattactcatcaca
gattctttcaatgccacctatgttcagccccgaagaaagcaacgagatgaacaattgctc
accaatgtcttggagactttgcgtggtgatggcaatgtgctcatcgctttggacactgct
ggcagagtgctggaattagcacagcttctggaccagatctggaggaccaaggatgctgga
ctaagcgtttattctcttgctttactcaataacgtcagctataatgtggtggagttttca
aaatcgcaggtagagtggatgagtgacaagttaatgagatgttttgaagacaaacgaaac
aatccctttcagtttcggcacctttctttgtgccacagcctttcggacctggctcgagtg
cccagtccaaaggttgtactgtctagtcaatctgacatggaatgtggattttcacgagat
cttttcatacagtggtgtcaggacccaaaaaactctgtgatcctcacttataggacgaca
cctggaacactggcaagatatttgatagacaatccgatcaccaaaaaaatggatatagag
ataagacgtcgtgtaaaattggaagggaaagagttggaagagtatctagagaaggagaaa
ctcaagaaggaggcagctaaaaagcaggaacaagagaaggagcgagatgttgactccagt
gatgagagtgatattgaagaagacatggaccagccactgactggcaaaaccaaacatgat
ctcatgatgaaaagtgagagcagtcgcaaaggaagctttttcaaacaggctaagaaatca
taccccatgttcccggctacggaagagagaatgaagtgggacgaatatggagaaataata
agagctgaggatttcttagttccggaacttcaggcagcagaagaagaaaagagcaaactt
gactctggtctgagtaatggtgaggagcctatggatcaagacttatctgatgttccaaca
aagtgtatctcagcattagaaaccatcgaaatcagagccagagtgacatatattgattat
gaaggacgctcagatggtgactctatcaaaaaaattattaatcagatgaaacctcggcaa
ttgattattgttcatgggcctccagagtctagccaggatcttgctgaatcctgcaaagca
tttggtggaaaggacattaaagtttacacgccaaagcttcaagaaacaatagatgctact
agtgagactcatatctaccaggttagactaaaggactctttagtcagttctcttcagttc
tgtaaagcaaaggatgcagagttagcctggattgatggtgtcttggacatgagggtggca
aaggttgatactggggtcgtcctggaagagggggagttaagagaggatgaagagggggaa
atgcaggttgatgctccctcaactacacacagctctgagcaagttgcagctcagcaaaaa
acaatgaagagcctcttcgatgatgatgaaaaagagaccaatgaagatcttgatgtaatt
cccacgctggaaccattatcagcaaatgaggttcctggtcatcaagcagtcttcattaat
gagccacggttatccgattttaaacaagttcttttacgggaaggtattcaagcagaattt
gttggaggtgtgctggtctgcaacaatttggtggctgttcgaagaactgagacaggacgc
attggactggagggatgtttgtgtgaagactattataaaatacgggaccttttatatgaa
cagtatgcaattgtgtaa
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