Scyliorhinus torazame (cloudy catshark): 140404489
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Entry
140404489 CDS
T11303
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
stoz Scyliorhinus torazame (cloudy catshark)
Brite
KEGG Orthology (KO) [BR:
stoz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
stoz03000
]
140404489
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
stoz03310
]
140404489
Transcription factors [BR:
stoz03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
140404489
Nuclear receptors [BR:
stoz03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
140404489
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
140404489
NCBI-ProteinID:
XP_072349201
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Position
30:complement(32725179..33729442)
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AA seq
510 aa
AA seq
DB search
MESHHPAAAPAASPEPATPTAADSLPSGGGQEAPVRRHNCSSTNRGISVTKKTHTSQIEI
IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNRCQHCRL
QKCLTVGMSRDAVKFGRMSKKQRDSLYAEVQRHRLQQQQRDHQQQPGEAEPLTPTYNGLT
ELNNDLSNLYMDGHTPGGGKADSGMSNFYLDIQPSPDQSGLDINGIKQEPICEYAVVPDF
FPYCSFTSGESSPTVSMTELEHLAQNISKSHIETCQYLREELQQITWQAYVQEEVEVYQN
KPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFVRMCRAFD
PQNNTVYFDGKYAGPDIFKSLGCDDLINSIFDFGKNLCALHLVEDEVALFSAYVLISADR
LWLQEKMKVEKLQQRIQLTLQHILQKHHREDGILTKLLSKVSTLRTLCNRHIEKLSSFKA
IHPDIVRVHFPPLYKELFSSEFEQMMPTDG
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggagtcccaccacccggcagcagctccagccgccagccccgagccggccacccccaca
gccgccgacagcctcccgagcggcggcggccaggaggcgcccgtccgccgccacaactgc
tccagcaccaaccgaggtatttccgttacaaagaaaacccacacgtctcaaattgaaatt
atcccttgcaagatctgtggagataaatcgtcggggatccattatggtgttattacttgc
gaaggctgcaaggggttctttcggagaagccagcagagcaacgccgcgtattcatgccct
cggcaaaagaactgcctgatcgaccggaccagccggaaccggtgccagcactgccggtta
cagaagtgtttgacggtggggatgtcacgagatgccgtcaagtttggtcggatgtccaag
aaacagagagatagcctgtacgccgaggtacaacgacatcgtctgcaacagcagcagcgc
gatcatcagcaacaaccaggggaagccgagcctctcactccaacttacaatgggctgacg
gaactgaacaatgacctcagcaacctatatatggatgggcacacaccgggaggaggcaaa
gccgactcgggaatgagcaacttttatttggacattcagccatccccagaccagtcaggc
ctggacattaatggcattaaacaagagcccatctgtgaatatgctgtggtcccagatttc
ttcccctactgctccttcacaagtggcgagagctcgcccacggtctccatgacagaacta
gagcaccttgcacagaacatttccaagtcccacattgagacctgccaatacttgcgagaa
gagctgcagcagatcacatggcaagcctacgtacaggaggaagtggaggtctatcagaat
aagcccagggaagtgatgtggcagctctgtgccatcaaaataaccgaagcgattcagtat
gtggtggagtttgcgaaacggattgacggattcatggaactgtgtcaaaacgatcagatc
gtacttctgaaagcaggttctttagaagttgtatttgtccgaatgtgtcgagccttcgac
ccacagaataatacagtttattttgacgggaagtatgctggtccagatatcttcaaatca
ttaggttgtgatgatttgatcaactccatctttgactttggtaaaaatttgtgcgcattg
cacctagtggaggatgaggttgccttgttttctgcgtatgtgctgatttcggcagaccgt
ctctggcttcaggagaaaatgaaggttgagaaactgcaacagcgaatccagctgacactc
caacatattttgcagaaacatcacagagaggatggcattctgaccaagctcctgtctaag
gtgtccacattacgaactctgtgtaatcgacacattgagaagctgtcgtcgttcaaagca
atacacccggacattgtacgggtacacttccctcccctgtacaaggagctgttcagctct
gagtttgagcagatgatgccaacggatggttaa
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