Scyliorhinus torazame (cloudy catshark): 140407258
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Entry
140407258 CDS
T11303
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5 isoform X1
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
stoz Scyliorhinus torazame (cloudy catshark)
Pathway
stoz03018
RNA degradation
stoz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stoz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140407258
09123 Folding, sorting and degradation
03018 RNA degradation
140407258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stoz03019
]
140407258
03041 Spliceosome [BR:
stoz03041
]
140407258
Messenger RNA biogenesis [BR:
stoz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140407258
mRNA degradation factors
5'-3' decay
Lsm complex
140407258
Spliceosome [BR:
stoz03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
140407258
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
140407258
NCBI-ProteinID:
XP_072350983
LinkDB
All DBs
Position
Unknown
AA seq
100 aa
AA seq
DB search
MTTRQVVLLNVKMALISTNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVML
EDVTEFEITPEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
303 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgcgtcaagttgttttgctcaatgtgaagatggcgctgatctcgactaatccc
tctcagttactgccactggagctggtggacaaatgcattggatcgcgaattcatattgtt
atgaaaaatgacaaggagattgtaggaacactgctaggttttgatgattttgtcatgctt
gaagatgtcacggaatttgagatcacaccagaaggcagaagaatcacgaaactcgaccaa
attttgttaaatggaaacaacataacaatgcttattcctggtggtgaaggtcctgaagta
tga
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