Scyliorhinus torazame (cloudy catshark): 140408680
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Entry
140408680 CDS
T11303
Symbol
cnot6l
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
stoz Scyliorhinus torazame (cloudy catshark)
Pathway
stoz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stoz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140408680 (cnot6l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stoz03019
]
140408680 (cnot6l)
Enzymes [BR:
stoz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
140408680 (cnot6l)
Messenger RNA biogenesis [BR:
stoz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140408680 (cnot6l)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
140408680 (cnot6l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_14
LRR_4
LRR_1
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
140408680
NCBI-ProteinID:
XP_072352309
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All DBs
Position
3:complement(130850106..131037607)
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AA seq
551 aa
AA seq
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MPKEKYDPKDLHRIYAIMSIEEAANGKKSHWAELEISGKVRSLSTSLWSLTHLTALHLND
NNLARIPPDIAKLYNLAYLDLSSNKLRSLPAELGNMVSLRELLLNNNLLRVLPYELGRLF
QLQTLGLKGNPLSQDILNLYQEPDGTRKLLNYMLDNLAVHPEQLPPRPWITLKERDQVLP
TALFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADILSLQEVETEQ
YFNLFLPELKQRGYDGFFCPKSRAKLMSEQERKHVDGCAIFFKTEKFALVQKHTVEFNQL
AMANSDGSEAMLNRVMTKDNIGVAVLLEVHKDLFGGVKTLHGTEKQLILVANAHMHWDPE
YSDVKLIQTVMIISELKTILEKSAASLRPSCPSADLNCIPLVLCADLNSLPDSGVVEYLS
TGGVAQNHKDFKELRYNECLMNFSCNGKNGTSDGRITHDFQLKSAYENNLMPYTNYTFDF
KGVIDYIFYSKTLMNVLGVLGPLDPQWLAENSITGCPHPHIPSDHFSLLIQLELQLSLPP
LMNGVHLPSRR
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggaaaaatatgatccaaaagatctacatagaatatatgcaatcatgtcaata
gaagaggcagccaatggaaagaaatcacactgggcagaattagaaatttcgggtaaagtg
aggagcttgagtacttcactgtggtctttaacccatttgactgcactgcacctgaacgac
aacaaccttgcacgcattccaccggatattgccaagctctataatctagcttacttggat
ctatcatccaataaactgcgcagtttaccagctgagcttggaaacatggtgtcactcagg
gaattgcttttaaataacaatctgttacgggttttgccttacgaactaggaagactgttc
cagttacagaccctgggtttgaaaggcaatcctttgtcacaggatattttgaacctctat
caagaaccagatggaacgagaaagctactgaactatatgcttgataatttagcagttcat
ccggagcagcttcctccaagaccatggattactttgaaggaaagagaccaagtgttgcca
acagcattgttcactgtcatgtgttataatgttctatgtgacaaatatgccacaaggcag
ctgtacggctactgtccatcctgggctttgaactgggagtacaggaaaaagggaatcatg
gaagaaattgtaaactgtgatgcagacatcctaagccttcaggaagtagaaacagagcaa
tactttaacctcttcctgcctgagttgaagcaacgtggatatgatgggttcttctgtccg
aaatcgcgtgccaaattaatgtctgagcaggaaaggaagcatgtagatggatgtgcaata
ttcttcaaaacagagaaatttgcattggtgcagaagcacacagtggaattcaaccaattg
gcaatggccaattcggatggctctgaagccatgttaaatcgagttatgacaaaggataat
attggggtagcggtgctcttagaggtccacaaggatctttttggaggtgtgaagacactc
catggaacagagaagcagctaattctggtggccaatgcacatatgcactgggaccctgaa
tattctgatgtgaagctcatccaaacagtgatgattatctctgaactcaaaactattcta
gagaagtcagctgcttctcttaggccaagttgcccttctgcagacctgaactgcattcca
ttggtactgtgtgcagatctcaattcactgccagattcaggtgttgtggaatatttgagc
actggaggtgttgcacagaatcacaaagacttcaaggagctgaggtataacgagtgcttg
atgaacttcagctgtaatgggaagaatggaacttctgatggcagaattactcatgatttc
caactaaagagcgcttatgaaaacaacttgatgccttacacaaattacacttttgacttc
aagggtgttatcgactacattttctattccaagactctgatgaacgtgttgggtgttctt
ggccctttggatcctcagtggcttgcagaaaattctatcactggatgcccgcaccctcat
atcccttctgaccacttctcactgttgatacagcttgaacttcagctttccttgccacca
ttgatgaatggtgtgcacttacccagcaggaggtag
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