KEGG   Scyliorhinus torazame (cloudy catshark): 140409162
Entry
140409162         CDS       T11303                                 
Symbol
wdr7
Name
(RefSeq) WD repeat-containing protein 7 isoform X1
  KO
K24738  rabconnectin-3b
Organism
stoz  Scyliorhinus torazame (cloudy catshark)
Pathway
stoz04142  Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:stoz00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    140409162 (wdr7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:stoz04131]
    140409162 (wdr7)
Membrane trafficking [BR:stoz04131]
 Endosome - Lysosome transport
  Acidification regulators
   Rabconnectin-3 complex
    140409162 (wdr7)
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_IFT122_1st WD40 Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd ASA1 WDR55 EIF3I Beta-prop_EML CFAP251_N WD40_MABP1-WDR62_2nd ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_VPS8 Beta-prop_WDR41 Beta-prop_IFT140_1st Beta-prop_ACSF4 Beta-prop_Aladin PAC11 Beta-prop_NOL10_N Beta-prop_WDR19_1st Beta-prop_WDR90_POC16_2nd Beta-prop_HPS5 WDR90_beta-prop_4th WDR72_alpha-sol Beta-prop_SCAP Beta-prop_Vps41 Tricorn_2nd TRM82_WD LRS4 DNAI3_WD PD40 Arminin
Other DBs
NCBI-GeneID: 140409162
NCBI-ProteinID: XP_072353465
LinkDB
Position
3:complement(286743086..287853200)
AA seq 1526 aa
MAANSLVLPIVLWGPKAPTHCISALLVMDDLATIVTGCHDGQICLWDLTPKLEIIPRALL
FGHTSSITCLSKANASSEKQYVVSASESGEMCLWDVNDGRCIEFTKLACTHTGIQFYQFS
IGTQREGRLLCYGHYPEILVVDAISLEVLYSLVSKISPDWISSVSIIRSLRTQEDTVVAV
SVTGILKVWIITAEISRMQDTEPIFEEESKPIYCLNCQSISFCTFTQRSLLVVCSKYWRV
FDAGDFSLLCSVSSESDQSWTGGEFVDADKIVIWTEDGSSFTYRLPSSCLPASESFRSNV
GKAIENSIPPLLYHVLDRKDKSNVQHVESGYVGEAVVHVPHECYPDPVQAWELYKPQVLS
CARPFEAPLLICPPVTRFFYGRREPFHKLLIQGDSSGRLLIWCIPETVDLPQRGIVHELK
VTTSACLQDTFDNLTPRPAGIIDQLSTLPGSEEPLKVTASVYIPSHGRLVCGREDGSIVI
VPATQTAIVQLLQGEHMLRRGWPPHRTLRGHRSKVTCLLYPHQVSTRYDQRYLVSGGVDF
SVIIWDINSGEMKHIFCVHGGEITQLVVPPENCSSRVQYCICSVASDHSVGLLSLRDKKC
IMLASRHLFPIQIIKWRPSDDYLVVGCSDGSVYVWQMDTGALDRCVMGITAVEILNACDE
AVPAAVDTLSHPAVNLKQAMTRRSLTALKHMAHHKLQTLATNLLASEAADKGALPKYSHN
ALMVQAMKTNLTDPDIHILFFDVEALIIQLLTEEASRPNPTLISPESLQKAQGSTDKGSS
FLTGKRAAVLFQQVKETIKENIKEHLLDDDEDDDEEMKKQKREESDSEYKGSKSKPLTLL
EYNLTMDTAKLFMSCLHAWGLNEVLDEVCLIRLGMLKPHCPVSFGLISRGGHMSLMLPGF
KQTTCMTLDGAIETGKKLILGNSAYNVSRAVTTQHLLSLISLANTLMSMTNATFIGEHMK
KLPQRPQKPSTLEMTKGKPSPPVSSSTIQGQIKQAAVAAHEADCSGNVLHNCPSVNEGWS
QLAAMHCVMLPDYLGQDKFRPPLLEMLARRWQDRCLEVREAAQALLLAELRRIEKEGRKE
TIDMWSPYLPQYVDNIMSPGVTTETLQAVGASPDIQGTDAKVQEEEADLADDDITTGCLP
GFLLQTKKLSSSYEERRKQATAIVLLGVIGAEFGAEIEPPKLPTRTRNTNQVPEGFGLTS
GGSNYSLARHTCKALTFLLLQPSTPKLPAHSTIRRTAIDLIGRGFTVWEPYMDVSAVLMG
LLELCADAEKHLTNITMGLPLSPAADSSRSARHALSLIATARPPAFITTIAREVHRHTAL
AANTQSQPNVHTSTLARAKSEILRVIEILIEKMPTDVVDLLVEVMDIIMYCLEGSLVKKK
GLQECFPSICRFYMVSYCERSNRIAVGARHGSVALYDIRTGKCQTIPGHSGRITAVSFAP
DGRYLATYSNADSHISFWQMNTSLLGSIGMLNSAPQLRCMKTYQVPPVHPASPGSQNALK
LARLIWTSNRNVILMAHDGKEHRFMV
NT seq 4581 nt   +upstreamnt  +downstreamnt
atggctgcgaatagcctggtgttgcccatcgtactgtggggccccaaagctccaacacat
tgtatttcagcgttattggtaatggatgatttggcaactatcgttacaggatgtcatgat
gggcaaatttgcctttgggatctaactccaaaattagagatcattcctagggccttactg
tttggccacacatcatccatcacttgcctttctaaagctaatgccagcagtgagaaacag
tatgtcgtcagtgcatctgaaagtggagagatgtgcctttgggatgtgaatgatggaaga
tgcatcgaatttactaaactggcatgcactcatactggtatacaattttatcagttcagc
attggaacacaacgtgaaggaagactactgtgctatggacattacccagaaatccttgta
gttgatgccattagcctggaggtcctttattctttggtgtccaagatttctcctgattgg
attagttcagtgagcattatacgttcactcagaacacaagaggatacagtggttgctgtt
tcagtaactggaattttgaaggtgtggattattactgctgaaatcagtcgaatgcaggat
actgagccaatatttgaagaggaatccaaacccatttactgcttaaactgtcaaagcatt
tcattttgcacatttacacagcgatccctgctggtggtttgttccaaatactggagggtg
tttgatgctggagatttttctttgttatgctcagtatccagtgagagtgaccagtcttgg
actgggggtgaatttgtagatgccgataagattgtcatttggacagaagatggaagtagc
ttcacttaccgactgccatcgagttgtttaccagccagtgaatcattccgcagtaatgtt
ggcaaagccattgagaattccattcctccattactgtatcatgtgttggacaggaaagat
aaatctaatgtccagcatgtagaatctgggtatgtaggggaggcagttgtccacgttcct
catgagtgttaccctgaccctgtacaggcctgggagctctacaaaccgcaggtgttgtct
tgtgctcggccttttgaggcaccacttctcatctgcccacctgtcacacggttcttttat
ggtcgtagagaacctttccataaactgttgattcagggagattcatcagggagactctta
atatggtgcattcctgaaacagttgacttacctcagagaggtatagttcacgagttgaaa
gtcaccacttctgcatgcttgcaagatacatttgataatctcactccaaggcctgctgga
attatagaccagctgagcacacttcctggcagtgaggagcctttgaaggtgacagctagc
gtttatattccctctcatggacgtctggtgtgtggtcgtgaagatggcagtattgttatt
gtgccagctactcagactgctatagttcagctactgcaaggagaacacatgctgagacga
ggctggccacctcatcgaactctacgtggccaccgaagcaaagtgacgtgcctgttgtat
ccacaccaggtctcaacacggtatgatcagcgctacttggtgtcaggaggagtagatttc
tctgtaatcatctgggatatcaactctggggaaatgaaacatatcttctgcgtccatggt
ggagaaatcactcaactggtagtgccaccagaaaattgcagttctcgagtacagtactgt
atctgctcagtcgccagcgaccattcagtgggtcttctcagcctccgagacaagaagtgc
attatgctggcatcgaggcatctatttcctattcaaattatcaagtggagaccttctgat
gattacctcgtggttgggtgttcagatggatcagtctatgtttggcaaatggacactggt
gcattagaccgctgtgtaatgggaattactgcagtggaaatcttgaatgcctgtgatgaa
gctgttccagctgctgtagatactctaagtcaccctgctgtaaacctgaagcaggccatg
actcgacggagcctcacagctttgaaacatatggcacaccacaagctccagacacttgct
accaaccttttggcctctgaagctgctgataagggggctttgccaaagtactcccataat
gctcttatggttcaagccatgaaaaccaatctgacagacccagatatccatatattattt
tttgatgtggaagctctgatcatccagctgctaacggaagaagcgtccagacccaatccc
actcttatttctccagagagcctccagaaagcacaaggtagcaccgacaaaggcagttcc
ttcctgactgggaagagagcagctgtcctcttccagcaggtgaaagaaaccatcaaagag
aatattaaggagcatttgctggatgatgatgaagatgatgacgaggagatgaagaagcag
aaaagggaagaaagtgactcagaatataagggcagcaagtcaaaaccactcacactgtta
gagtacaacctaacaatggacactgccaagctattcatgtcctgccttcatgcttggggg
ttaaatgaagtattggatgaggtttgcctcattcgccttggcatgttaaaacctcattgt
cccgtatcttttggtttgatttcaaggggcggacatatgtcactgatgcttcctggcttc
aaacagactacttgcatgacactagatggtgccattgaaacaggaaaaaaactcattctg
ggaaacagcgcatataatgtgtccagggcagtcacaactcaacacctgctctctcttatc
tctttagctaatacactaatgagcatgactaatgccaccttcatcggagagcacatgaaa
aaattgccacaaagaccacagaaaccaagcaccctagagatgactaaagggaagccttcc
cctccagtctcctccagtacaatacagggacagatcaaacaagctgctgttgctgcccat
gaggctgactgctctggcaatgttttacataactgcccctcagtcaatgaaggctggagt
caactagcagccatgcattgcgtaatgcttcctgattatctgggacaggacaagtttaga
cctcccctcctagagatgttggcccggcgatggcaagatcgttgtttagaggtgagagaa
gctgctcaagctttactgttggcagagcttcgtagaattgagaaagaaggacgaaaggaa
acgatagacatgtggtcaccatacctgccacagtatgtggacaacataatgtcacctggt
gtgacaaccgaaaccttgcaagctgttggtgcaagtcctgatatacaagggacagatgcc
aaagttcaagaagaagaagctgacctagcagatgatgacattactacaggctgtttgcca
ggtttcctgctacaaacaaagaaattgtcgtcatcttatgaggagcgccgtaaacaggct
acagccattgtccttcttggtgtcattggagcagaatttggtgctgagattgaacctcca
aagctgccaactcgaactcggaacaccaatcaggtcccagagggctttggactgaccagt
ggagggtccaattattccctagctagacacacctgcaaggctttgacattcctcctgctg
cagccttctacccctaaacttccagcacacagcacaatccgcagaactgccattgatttg
attggccgtggctttactgtgtgggagccctatatggatgtgtcggccgtgctgatggga
cttctagagctctgtgctgatgctgaaaaacatctcactaacattacaatggggctgccg
ctcagcccagcagctgactcctcccgctcagcacgtcacgctctttcactcattgccaca
gccagaccaccagccttcattactactattgcccgtgaggtccaccgacacacagcttta
gcagccaatacgcagtcccagccaaatgtgcacaccagcaccttggctcgtgcaaagagt
gaaattctgcgagtgattgagatactaatagaaaagatgccaacagatgtagttgacctt
ctagtagaggttatggatatcatcatgtattgcctggaaggatccttggtcaagaaaaag
gggcttcaagaatgtttcccttcaatttgtcggttctacatggtaagctactgtgagagg
agtaacaggatagcagtcggagctcgacatggctcagtggctttatacgacatccgcaca
ggaaaatgccagaccattcctggccacagtggacgaataactgcagtgtcctttgctcct
gatggacggtatttagccacatattccaatgctgacagtcacatctcattctggcagatg
aacacttcactgttgggaagtatcggtatgctaaactctgccccccagctcagatgtatg
aaaacataccaagtgccccccgttcatcctgcttctcctggttcccagaatgcactgaaa
ctggcacgtctgatctggacatccaaccgcaatgtcatcctgatggcacatgatgggaaa
gagcatcgatttatggtttga

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