Scyliorhinus torazame (cloudy catshark): 140426006
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Entry
140426006 CDS
T11303
Symbol
col11a1a
Name
(RefSeq) LOW QUALITY PROTEIN: collagen, type XI, alpha 1a
Organism
stoz Scyliorhinus torazame (cloudy catshark)
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
140426006
NCBI-ProteinID:
XP_072366378
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Position
7:complement(1776469..2918863)
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AA seq
1889 aa
AA seq
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MEDTDTRWKTKRWLRICTFTITFISFLQVTSVQGAEPVDVLRALEFHNFPEGIVKTPGYC
KNRRNTQGADVAYRVTKRAQISAPTKQLYPGGQFPRDFSILVTLKAKRSTQAFLLSVYNE
QGVQQMGVEVGRSPVFLYEDQNGRPPPEDYPIFTTTNLADNKWHRVAISVHKKNVTMIVD
CKKKISKALPRSNNPVVDTNGIVVFGTRILDEEVYEGEIQQLLIVPDHRAAYDYCDYYSP
DCNNPLPNIPQAQEPQVNEYSPEEILEYDYDYSDGDFVEFDYQPTEEKSTLEGTDFPTEV
VTNVLPEETGEEYYYETYEGTTSSTVGEKVNETNIEDNYKEDYLTGEDYYLEKKETEEKE
QELNEYDLNEYDFKEYDPNEYEIKEYDDLNGHDLNGHDVKEHDLNGHDLNGHDVKEHDLN
GHDLNEHDVKGSSSKGTGTNDHEFKTYDVEEYDPNEYDPKRYEDEYYYEVTEYEDKDPTT
TSTREVFGPGVPAETSVNTNSLGVSGEKGQKGERAVVEPGMLIEGPPGLEGQAGLPGSPG
LTGPPGPYGDPGQRGPTGRAGLPGADGLPGPPGTMLMLPFQYGSSGEKGPIVSAQQAQAQ
AILQQARIAMRGPTGPMGLTGRSGPVGIPGGAGLKGQEGEEGPQGPRGSQGTFGAPGKPG
KRGRSGADGSRGMPGESGAKGDRGFDGLPGLPGMKGNRGETGALGPPGPTGDDGERGDDG
EIGPRGLPGEAGTRGLLGPRGSPGPPGQPGSTGLDGPQGSKGNMGPQGEPGPAGQQGIPG
PQGLPGPQGTIGPPGAKGPQGKAGLAGLAGADGPPGHPGKEGPSGEKGAQGSSGPQGPIG
YPGPRGVKGADGVRGLKGGKGEKGEDGFPGFKGDMGVKGERGENGLVGPRGEDGPEGPKG
RAGPPGDAGSPGSAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGSNGEKGARGVPGKSG
PRGQRGPTGPRGGRGPRGPTGKPGAKGTSGNDGPPGTSGERGPQGPQGPTGFAGPRGPPG
PAGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPLGERGHPGPPGPPGXQG
LPGSAGKEGAKGDPGPSGGAGKDGPPGLRGFPGERGLAGAMGSSGLKGGEGPIGPTGPVG
SPGERGSAGPAGPIGLPGRPGPQGGLGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG
PQGPPGEDGDKGEVGEPGQKGTKGGKGEHGPPGPHGLQGPIGQPGPAGGDGEPGPRGQQG
MFGQKGDEGSRGFPGPPGPIGLQGLPGPPGEKGETGDVGAMGPPGPPGPRGPQGPSGADG
AQGPSGGVGSPGGVGEKGETGEAGDPGPPGDRGRGGPKGDFGDKGEAGPPGAAGPAGPKG
PAGDDGPKGNPGPVGFPGDPGPPGEPGTSGADGTAGDKGEDGESGPAGPPGPSGEAGPPG
PPGKRGPHGSAGAEGRQGDKGAKGEAGAEGPPGKTGPVGPQGPPGKSGPEGLRGIPGPVG
EQGLPGPPGQDGPPGPMGPPGLPGLKGVPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPG
LQGTPGTKGDSGITGTSGPLGPPGPPGLPGPLGPKGSKGSSGPSGQKGDTGLIGLPGAPG
PPGEVIQPLPIRTPKKTRRSSDGMQADERDNILDYTNGMEDIFDSLDNLKMEVDRMKNPM
GTHSNPARTCKDLQLSHPDFPDGEYWIDPNQGCHGDSFKVYCNFTSGGETCIYPDKKSEA
TRVSPWPKESPGSWFSEFKRGKLLAYVDSQGEHINLVQMTFLKLLSASARQNFTYNCQHS
VGWYDAASDSYDKALRFLGSNDEEMSHDNNPYIKAIYDGCTLSKGLEKTVLEINTPKVDQ
VPIMDLLVSDFGSSNQRFGFEVGAVCFLG
NT seq
5670 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaccgacacgcggtggaaaacgaaaaggtggctgagaatctgcaccttcaca
ataaccttcatatccttccttcaagttacaagtgtacaaggagctgaacctgttgatgtc
cttcgagcattagaatttcacaattttccagagggaattgttaagacgcctggatactgc
aagaacaggaggaacacacagggggcggatgtggcgtacagagtgaccaagcgagctcag
atcagtgctccaaccaagcaattatatccaggtggccagttcccaagggatttctccatt
ttagttacattaaaagcaaagagaagcacgcaggcattcctgctttctgtttacaatgaa
caaggagtgcagcagatgggagtggaggtcggcaggtctcccgttttcctgtacgaggat
cagaatggtcgcccgccacctgaggattatcccatattcacaacaactaacctggctgac
aataagtggcaccgtgtggccattagtgttcacaagaagaatgtgacaatgattgtcgat
tgcaaaaagaaaatttccaaagctcttccacgaagtaacaaccctgtggtggataccaat
ggcattgtggtgttcggtacacggattctggatgaagaagtttatgagggtgagatccag
cagctgttaattgtgcctgatcatcgggctgcgtatgattactgcgactattacagtccc
gactgtaacaatcctctacccaacatcccgcaggctcaggaaccacaggtcaatgagtac
tctcctgaagaaatactggaatatgactatgattatagtgatggagactttgtagagttt
gactatcagccaactgaggaaaaatcaacattggaggggacagacttcccaactgaggtg
gtgaccaatgtgctgccggaagagactggcgaggaatattactatgaaacctatgaggga
acgaccagctcaacagtcggagagaaagttaatgagacaaatattgaagacaactataaa
gaggactatctgactggagaggattattatcttgaaaagaaagagactgaagaaaaggaa
caggaacttaatgagtatgatctgaatgagtatgatttcaaagagtatgatcccaatgaa
tatgagatcaaggagtatgatgacctcaatgggcatgaccttaacgggcatgatgtcaaa
gagcatgacctcaatggccatgaccttaacgggcatgatgtcaaagagcatgacctcaat
ggccatgacctcaatgagcatgatgtcaaaggttcttccagcaaaggaactgggactaat
gatcatgaattcaaaacatatgatgttgaagaatatgaccccaatgaatatgaccccaag
cgttatgaagatgaatattattatgaagtcacagaatatgaggacaaagacccaacaacc
acatctactagggaggtgtttggacctggggttccagctgaaacaagtgtcaatacgaat
tctcttggtgtctcgggggagaaaggtcagaaaggagagcgagcagtggtggaacctgga
atgttaattgaaggacctccaggattagaggggcaagcgggtcttccaggctcccctggt
ctaacaggcccaccaggtccctatggcgatccaggtcagaggggtccaacaggacgagcg
ggtcttcccggagcagatggtctgcctgggcccccaggaaccatgttaatgttaccgttc
cagtatggttcgagtggtgaaaagggtccaattgtttcagcgcagcaagctcaggctcag
gctatcttgcaacaagccaggatcgcgatgcgaggtccaactggtccaatgggtctgacg
ggaagatcaggtcctgtggggattcctggtggagctggactgaaaggccaggaaggtgaa
gagggcccacagggtcctcgaggaagtcaaggaacctttggtgcacctggcaaaccaggg
aagaggggtcggtccggagctgatgggtcccggggaatgccgggggagtcaggagcaaag
ggtgatcgtggctttgatggactgcctggtcttccgggtatgaaaggaaaccggggtgag
acaggagcactgggtccaccagggccaacaggggatgatggagaaaggggtgatgatggc
gagatcgggccacgagggcttcctggtgaagctggaacaagaggtctccttggaccacga
ggatctcctggacctccaggacagccgggttccacaggtttggatgggccacaaggttca
aaaggaaacatgggacctcaaggcgagcctggaccagcgggccaacagggaatcccagga
cctcaaggtctccccggccctcaaggtacaatcggacctcctggagctaagggacctcag
ggtaaagctggactcgctggtttggctggagctgatgggcctccaggccacccagggaaa
gagggaccgtcaggagagaaaggtgcacagggatcttcaggtccacaaggtccaattgga
tatccaggtcctcgaggagttaagggcgctgatggagttcgtggcctcaaagggggaaaa
ggggagaagggtgaagatggttttccagggttcaaaggtgacatgggtgtgaaaggggaa
aggggtgaaaatggattggtcggaccacgaggtgaagatggaccggagggtccgaaaggt
cgagctgggcccccaggagacgctgggtcaccgggatctgccggagagaagggaaagctc
ggtgttccaggtttgcctggatatcccgggagacaaggtcccaagggatcgacaggattc
ccaggatttcctggatcaaatggagagaaaggagcgaggggtgttcctgggaaatctgga
ccgaggggacaacgaggccccacaggtccacgaggaggccgtggtccgagaggacccaca
ggaaaaccaggagcaaagggaacatctggcaatgatggaccgcctggaacatctggggaa
aggggaccacaaggaccccaaggcccaacaggatttgctggaccgagaggacctcctggc
ccagctggaaaagatggattgccaggacatcccggacagagaggtgagacgggtttccaa
ggcaagactggccctccaggtcctggaggagttgtgggacctcaggggccaactggagag
acaggacccttaggtgagagagggcacccagggcctcctgggccacccgggnagcaaggg
ctcccaggatctgcagggaaagaaggtgctaagggggatcctggtccttcaggtggtgct
gggaaagatggtccacccggtcttcgcggtttcccaggagagagggggcttgctggagcg
atgggatcgtctggattgaaaggaggtgaaggtcccattggtcccacgggtcctgttgga
tctcctggtgaacgaggatctgctggacctgctggtcctattggccttcctggtcgccct
ggacctcaaggtggtctcggccctgctggggagaaaggtgctcctggggagaaaggaccc
cagggtcctgctggccgcgatggggttcagggtccagttggtttgccgggtcccgctggc
cctcagggtcctccaggggaagatggtgacaagggcgaggttggagaacccggtcaaaaa
ggcaccaaaggaggcaaaggagaacacggacctcctgggcctcacggtctgcaaggaccc
attggacaacctgggccagcgggaggagatggagagccaggccccagaggacagcaggga
atgttcggacagaaaggtgacgaaggatcacgtggattccctgggccgccaggaccaatc
ggccttcagggtctcccaggaccaccaggtgaaaagggtgagacgggtgacgttggtgcc
atgggacctcctggacctccgggacctcgcggaccacagggccccagtggagctgatgga
gcccaaggcccatctggtggagttggttctcctggcggagtcggtgagaagggtgagacg
ggtgaagctggtgacccaggacctccaggtgacaggggtcgagggggtcctaaaggcgat
tttggagacaagggtgaggcaggtcccccaggggctgctggtccagccggacccaaagga
ccagctggagacgacggacccaaaggcaaccctggtccagttggtttccctggagatcca
ggccctccaggtgaaccgggaacgtcgggcgctgatggaactgcgggtgacaagggtgaa
gatggagagtccggaccagctggacctccgggaccatctggtgaagcgggaccgccggga
cctcctggaaaacggggacctcatggatctgctggtgctgaaggcagacaaggagataaa
ggagcaaaaggtgaagcaggtgctgagggaccgccaggaaagaccggcccagtgggacct
cagggacctccaggaaaatcaggccctgagggattacgaggaattcccggccctgttggt
gagcaaggcctccctggaccacctggtcaagatggaccacctggacccatgggtccccct
ggtttgccaggattgaagggggttccaggaagcaagggagagaagggacacccgggattg
attggattgattggaccaccaggtgaacagggtgagaagggagaccgaggccttccaggc
cttcagggaaccccaggaaccaagggagactcaggtattaccggaacctcaggacctctt
gggccccccggaccccctggtttgcctggtccactgggtcctaaaggttccaagggttcg
tcgggtccttcgggtcagaaaggagatactggtttaatcggacttcctggggcccccggt
ccaccaggtgaggtcatccagcctctgccaatccgaacaccgaagaagacacggagatct
tccgatgggatgcaggcagacgagagggacaacatcctggactacaccaatggcatggag
gatatctttgactcgcttgacaacttgaaaatggaagtggatcgaatgaagaatccaatg
ggcacgcacagcaacccagctcggacctgtaaggacctccagctatctcacccagacttc
ccagatggtgaatattggattgatccaaatcagggttgccacggagattcctttaaggtt
tactgcaactttaccagtggaggggagacctgtatctacccagacaagaaatcagaagcg
actcgggtctctccttggccaaaggaatctcccggatcctggttcagtgagttcaagcga
ggaaaactgctcgcctatgtggattctcagggtgaacacattaacttggtgcagatgaca
ttcttgaaactgcttagtgcctctgcgagacagaacttcacctataactgtcagcattct
gtaggctggtatgatgcagcctccgacagttatgacaaggcgttgagattcctcgggtcc
aatgatgaggagatgtcacacgacaacaatccatacatcaaagccatctatgatggttgc
acgctaagcaaaggtttggaaaagactgttctggagattaataccccaaaagtagatcaa
gttccaatcatggacttgttggtgagtgactttggcagcagcaaccagaggtttgggttt
gaagttggtgcagtttgtttcctgggctaa
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integrated database retrieval system
