Scyliorhinus torazame (cloudy catshark): 140427012
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Entry
140427012 CDS
T11303
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
stoz Scyliorhinus torazame (cloudy catshark)
Pathway
stoz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stoz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140427012 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
stoz03041
]
140427012 (ddx46)
Enzymes [BR:
stoz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140427012 (ddx46)
Spliceosome [BR:
stoz03041
]
Complex A
U2 snRNP components
U2 related factors
140427012 (ddx46)
Complex B
140427012 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
140427012
NCBI-ProteinID:
XP_072368508
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All DBs
Position
7:complement(265711099..265841152)
Genome browser
AA seq
1036 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPAEKRSKLGDVRGRSRSRERDRRRDRSRSRDRRR
SRSRERKRLRIPQRCRMPVVIPKRSRSRERRRSRSREKRRSVSRGRSRRSHSQPRSRSRS
KSKERRSKSKDRVEVTNEAIKEKKKEEKDDDKDVSNFEQSKLEEEMRKRKERVEKWREEQ
RKKVVENLGEIKRELEEMKQGKKWSLEDDDDDEDEIIEGERKEEGDDDNEELDPLDAYME
DIKEEVKKFNMGSVKGGSEKKSGATVMKVMTVVTTKKPYSEMEKKKGELMENDQDAMEYS
SEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEYESYRKNFYVEVPELAKMTADEVTAYRL
ELEGIAVRGKGCPKPIKSWVQCGISMKILSSLKKQGYEKPTPIQAQAIPAIMCGRDVIGI
AKTGSGKTIAFLLPMFRHIMDQRPLEEAEGPVALISTPTRELALQITKECKKFSKALGLR
VVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNFRRVTYVVLDEADRMF
DMGFEPQVMRIVENIRPDRQTVMFSATFPRAMEALARRILTKPIEVQVGSRSVVCSDVEQ
QVIVIEEENKFLKLLELLGHYQETGSVIVFVDKQEHADGLLKDLMRAAYPCMSLHGGIDQ
YDRDSIINDFKTGVCRLLVATSVAARGLDVKQLILVINYSCPNHYEDYVHRVGRTGRAGN
KGYAYTFITEDQVRYAGDIIKALELSGNAVPIELEKLWDDFKEQQKAEGKTIKKSSGFSG
KGFKFDETEQVLANERKKLQKAALGLQDSDDEDTAVDIDEQIESMFNSKKRVKDMAMPGA
ANVPVPSAGNAEKLEIAKRLALKINAQKNLGAEAQDVMQQATNAIMRGRTLQAPTVSAKT
IAEQKAEKINAKLNYVPAEKQDDEKPENAQTESFKRYEEELEINDFPQTARWKVTSKEAL
QRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESASELAVQKAKAEITRLIKEELIR
LQNSYQPTNRGRYKVL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgggcagagaatccaggcattatcggaagcgatctgcatcgcgtgggcgttctgggagt
cgctccagaagtcgttcacctgctgagaagcggtccaaacttggggatgtcagaggtcgt
tcacgcagtcgagaacgtgatcggcgaagggatcgctctcgtagtcgggataggagacgg
tcaagatcacgggaaagaaaacgactcagaataccacagagatgcagaatgccagtggtc
ataccaaaacgatccaggagtcgagagaggaggagatcccgcagtcgagaaaaacgccga
tcagtaagcagaggtagaagccgtagatcacactcccaaccacgctctcgaagccgcagt
aagagcaaggaaagaagatcaaaatcgaaagaccgtgtagaagtgaccaacgaggccatc
aaagagaagaaaaaggaggagaaagatgatgacaaagatgttagtaattttgaacaaagc
aaattggaggaagaaatgagaaaacgaaaagaacgagttgaaaaatggagggaagaacaa
cgcaaaaaggtcgttgaaaatcttggtgaaataaaaagagaacttgaagagatgaaacag
ggcaaaaagtggagccttgaggatgatgatgatgatgaagatgaaatcatagagggtgaa
aggaaagaagaaggagatgatgacaatgaagaattagacccattagatgcttacatggaa
gatataaaggaggaagtgaagaaatttaacatgggaagtgtaaaaggaggaagtgaaaaa
aaatcgggtgcaactgtaatgaaagtgatgactgtggtgactaccaaaaaaccatattct
gaaatggagaaaaagaaaggagagctcatggagaatgaccaggatgcaatggagtattcc
tcagaggaggaggaagttgaccttcagactgcacttacagggtatcagactaaacagagg
aagctactggaacctgtggatcatgggaaaatagagtatgaatcatatcgaaagaacttt
tacgttgaagttcctgaactcgccaaaatgactgcagacgaagtgactgcctacagattg
gagttggagggaattgcagtacgtggtaaaggctgtccaaaaccaattaaatcatgggtg
caatgtggaatctctatgaagatattaagttcattgaaaaagcaaggatatgaaaagcca
acaccaattcaagcacaggcaattcctgccatcatgtgtggacgcgatgtaattggaatc
gctaaaactggaagtgggaagacgatagcttttcttttacctatgttccgacacatcatg
gatcagaggccgctggaggaagcggaaggtcctgttgcactcatctccaccccaacccgt
gagttagccctgcagattaccaaagaatgcaagaagttctcaaaagcacttggactaagg
gtagtgtgtgtttatggtggaactggaataagtgaacagattgctgaactaaagcgagga
gcagaaattatagtttgcacaccgggccgcatgatagacatgcttgcagccaataatggt
cgcgtaacaaattttcgcagagttacctatgttgtacttgatgaagcagatagaatgttt
gatatgggttttgagccccaggtaatgcgaatagtagaaaacattcgaccagaccgacaa
actgttatgttttctgctacattccccagagcaatggaggccctagcacgacgaatacta
acaaaacctattgaagtgcaagtaggcagtaggagtgtcgtttgctctgatgttgagcaa
caagtgattgtcatagaggaggagaacaagtttttgaaattgttagaactcttgggtcat
taccaagaaactggctctgttatagtgtttgtggacaagcaagagcatgctgatggttta
ttgaaggacctgatgagggcggcctacccctgcatgtcattacatggaggcattgaccaa
tacgaccgcgacagtataatcaatgattttaagacaggagtgtgccgattgcttgtggca
acatcagtagcagcacgaggactggatgtgaaacagctgattcttgttatcaactacagt
tgtcccaatcactatgaagattatgtacaccgagtggggcgtactggaagagctggtaac
aaaggttatgcctatacgttcattactgaagatcaagtccgttatgcgggggatataatt
aaagccttagaattatcaggaaatgctgttccaattgagctggaaaaattgtgggatgac
ttcaaagaacaacaaaaggcagaaggaaaaactattaagaagtccagcggcttctctggg
aaaggctttaagtttgatgagacagaacaagttctagcaaatgaaagaaagaaactacag
aaagctgctctgggcctacaggattctgatgatgaggacactgcagttgatattgatgaa
cagattgagagcatgtttaattccaagaagcgtgtaaaggacatggcaatgccaggagct
gctaatgttccagtgccatctgctggtaatgcagagaaattggagattgcaaagaggttg
gcactgaagatcaatgctcagaagaatctcggtgcagaagctcaggatgtgatgcagcaa
gctacaaatgctattatgagaggccgcactctccaagctccaactgtgtctgctaaaaca
attgcagagcagaaagcagagaagatcaatgccaaactcaattatgtgccagcagagaag
caagatgatgagaaaccagaaaatgcccaaacggaatcattcaaaagatatgaggaagaa
ctcgagatcaatgatttcccacagacggccaggtggaaggtaacctccaaggaagctctg
cagaggattagtgaatattcagaagctgctatcactattagaggcacttactttcctcca
gggaaagagcccaaagaaggcgaacggaaaatctaccttgctatagaaagtgccagtgaa
ctggctgttcagaaagctaaagctgagattacaagacttattaaagaagaactcattaga
ctgcaaaactcataccagccaaccaaccgtggacgatataaggttttgtag
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