Scyliorhinus torazame (cloudy catshark): 140428606
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Entry
140428606 CDS
T11303
Symbol
rbm39a
Name
(RefSeq) RNA-binding protein 39a isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
stoz Scyliorhinus torazame (cloudy catshark)
Brite
KEGG Orthology (KO) [BR:
stoz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
stoz03041
]
140428606 (rbm39a)
Spliceosome [BR:
stoz03041
]
Common components
Common spliceosomal components
General mRNP proteins
140428606 (rbm39a)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RBD_DEAH11
PRP38_assoc
RRM_5
RRM_7
Motif
Other DBs
NCBI-GeneID:
140428606
NCBI-ProteinID:
XP_072371361
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All DBs
Position
8:264428896..264480854
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AA seq
542 aa
AA seq
DB search
MWQSEKMADDLDIEALLEAPYRKEDENKSSKANGQEERSKKKKKSRSRSHSRERKRSRSK
ERRRSKERDRKRSRSRERKSSKSREHRRSRSKDRRRVERGRYRSPFLEKRLISGPKFGSG
SSSRGKIGMQPGIKISRRRSRSRSPHKKDKSPIREPIDNISPEERDARTVFCMQLAARIR
PRDLEEFFSSVGKVRDVRMISDRNSRRSKGIAYVEFVDVNSVPLAIGLTGQKLLGVPIIV
QASQAEKNRAAALANNLQKGTAGPMRLYVGSLHFNITEEMLRGIFEPFGRIENIQLMMDS
ETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKVGHVTERSDSSNASSFLDSDELE
RTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGNISLGAMAAVTDLQARIIQQTE
ALNPPVTVNTPPIATQCFQLSNMFNPQSEDDPAWDKEIRDDVIEECNKHGGVIHIFVDKN
SPQGNVYVKCPTIAAAAAAVGALHGRWFAGKMITAAYVPLPTYHNLFPDSMTTTQLLTPA
RR
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgtggcaatccgaaaagatggcagatgacttggatattgaagcactgctcgaggcacct
tacaggaaggaggatgagaacaaatcgagcaaagccaatggacaagaggagcgtagtaaa
aagaaaaagaagagccgaagtcgcagtcacagtcgtgaaaggaagagaagcagaagcaaa
gagcgcaggcgcagcaaagagcgagacaggaagagaagcaggagcagagagagaaagagc
agcaagagtagagaacatcgtcgcagtcgaagcaaggaccgccggagggtagaacgaggc
cgttataggagcccatttttggagaagcgacttatttctggtccaaaattcggcagtggt
agcagcagcagagggaagattggcatgcaacccggtatcaaaataagtcgaagacgctcc
cgaagtagaagcccacataaaaaggataaaagtccaataagggagccaattgataacatt
tcacctgaagaaagagacgcccgaacagtattctgcatgcagcttgcagcgcgaattcga
ccgagagacttggaggaattcttttcttcagtgggaaaggtacgagatgtaagaatgata
tcagacaggaactcaaggcgttcaaaaggaattgcttacgtggaatttgtcgatgtgaac
tctgttcccctcgcaataggtttgactggacagaagctacttggtgtgccaattattgtt
caggcttcacaggccgagaagaaccgagctgcagccctcgctaacaaccttcagaaaggc
actgcaggaccaatgaggctatatgtaggatctttgcacttcaatatcactgaagaaatg
ttgagaggaatttttgagccctttgggagaattgaaaacattcaactaatgatggacagt
gaaacagggaggtcaaaaggctatggattcataacattttctgatgctgagtgtgcaaag
aaggctctagaacagctgaatggctttgagcttgcaggtagaccaatgaaggttggccat
gttacagaacgatcggattcatccaatgctagctcattcctagacagtgatgagctggag
aggactggtattgaccttggaacgacagggcgcctacaattgatggctaggctcgcagaa
ggaacgggattgcaaattcccccagcggcacagcaagctttgcagatgagtggcaatatt
tcattgggcgccatggcagcagtaacagatttgcaagcaagaattatccaacagactgaa
gcactgaatccccctgtgactgtaaataccccaccaatagcgacacagtgtttccagctc
tccaacatgtttaacccgcagtcggaagatgatccagcctgggacaaagaaattcgagat
gatgtaattgaagaatgcaacaaacatggaggagtaattcacatatttgtggacaaaaat
tcaccccagggaaatgtctatgtgaagtgtccgactattgctgctgcagctgccgctgtt
ggagcattgcatggaaggtggtttgcaggcaaaatgatcactgctgcctatgtgccactt
ccaacctaccacaacctcttcccagattcaatgacgaccacccagctgctgactccagca
agacgatag
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