Scyliorhinus torazame (cloudy catshark): 140429118
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Entry
140429118 CDS
T11303
Symbol
htt
Name
(RefSeq) huntingtin isoform X1
Organism
stoz Scyliorhinus torazame (cloudy catshark)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
140429118
NCBI-ProteinID:
XP_072371803
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Position
9:24080993..24391284
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AA seq
3124 aa
AA seq
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MATMEKLMKAFESLKSFQQGPSTEEPGQKQKKESATTKKDRVTHCLTICENIVAQSLRNS
PEFQKLLGIAMEMFLLCCDDAESDVRMVADECLNKIIKALTDSNLPRLQLELYKEIKKNG
PSRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLARISKRSEESVQETLAAAVPKIMMA
LGNFANDSEIKMLLKTFIGNLKSSSPTIRRTAASSAVSICQHSRKAQYFYTWLLNVLLGF
MVPVEEDRHTPLILGVMLTLRYLMPLLRQQVKDTSLRGSFGVTRKEAEISPSLEQLIQAY
ELTLHYTQHRDHNVVTAALEMLQQLFRTPPPELLRALTTSSSITRVSIARDDSSNRVRSG
SIVELIAGGGSPCSPAILRKQKGKMVSGEEDGLEDDAETRSEVSTATFPGSVNSEGAVDV
PSPSALGSTSPVPDSTGHDIITQQPRSQHTLQSAESVDLNSSATSDLTGLTVEGDVDEAL
SRSSSQISTIQSDTNADQNDRTNQAISPLSESSQTTEGPDSAVTPSDSSELVLDGTDSQY
SAMQIGQLQDEEEDTSNTPGDALLDGFTTSTLAVNKSHLLSHMGHSRQSSDSSVDRFVAK
DDCVEAADLDTKQPCRIKGDIGHYTDENAAPLIHCVRLLSASFLLTGQKNGLIPDREVRV
SVKALAVSCVGTAIGLHPEAFFNKLYRTPLEVLESQEEQCISDILKYVDHGDPQIRGATA
LLASTFIHSVLTKTRFNPENWLAAVRGATGYGVSLDDCVPLLQKTLKDKSSVTCKLACAA
VRHCIMSLCNSSYSELGLQLTIDLLTLKNNSYWLVRTELLETLAEMDFRLVGFLERKTVE
LHRGQHHYTGMLKLQERAVNDVIIHLLGDEDPRVRHVAATTLVRLIPRLFFDCDQGQSDP
VVAVARDQSSAYLQLLMHETQSPSHFAVSTITRTYRGFNISQNTTDVTIENNLSRVISAV
SHALTSSTSRALILGCCEVLSLLSLNYPVCNWSIGWHCGYTTSSSQASRVHLYKNRGRSF
SLSQNSPTDDSRKSCTVGMVNMILSLLSSAWFPLDLSSHQDALILSGNLLAAIAPKSLKN
PWANEDDAAPTTKLEEPWPALADRTLVGMVEQLFSHLMKVINICAHVIDDVAPGPALKAT
LPSLANTPSLSPIRRKGKERESAEQMAAPMSPKKSSESSPAARPADAVGAAPTSKSTSLG
SFYHLPPYLKLHDVLKATYANYKVTLDLQNNNEKFGSFLRGTLDVLSQLLEIATLPDIGK
CVEEILGYLKSCFCREPMAATVCVQQLLKTLFGTNLASQYEGSSSNPSKSQGKVQRLGSS
NLRPGLYHYCFMAPYTHFTQALADASLRNMVQAEPEQDTSGWFDVLQKVSSQLKVSLTNV
ARHRADKNAIHNYIRLFEPLVIKALKQYTTTTSVHLQRQVLDLLAQLVQLRVNYCLLDSD
QVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYHSKPIIGIPKIIQLCDGIM
ASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELDTQKEVVVSMLLRLIQYHQSCSKH
LEMVLEMLILVLQQCHKENEDKWKRLSRQIADMILPLLAKQQMHLDSHEALGVLNTLFET
VAPSSLRPVDMLLKSMFAMPGTLASVGTVQLWISGILAILRVLISQSTEDIVLSRVQELT
LSPYLISCQNISVLRDRGNQIVPPEEQDEEIQSKHLPEETFARFLLQMVGILLEDIVNKQ
LKVDMSEQQHSFYCQQVGTLLMCLIHIFKSGMFRRITAAATRLIVGNGSDGSFYTLESLN
VLVQSIIPTHPSLVLLWCQILLLVNYTNYSWWSEVHQTPKRHSLSSTKLLSPQISENEDS
KSASKLGVCNREIVRRGALILFCDYVCQNLHDSEHLTWLLVNHVQDLINLSHEPPVQDFI
SAIHRNSAASGLFIQAIQSRCDNLATPTMLKKTLQCLEGIHLSQSGAVLMLYIDKLISTP
FRVLARMVDTLACRRVEMLLAESLQNSVAQVPREELERIQRYLQTTCLAQRHQRLYSLLD
RFRTTVAAETVSPSPIVTSHPLDGDRLASMESIIVEKDWYVSLIKWQCCSKLNTALMECT
ELLDKLPEDDLCSVMTSKEFNLNLLTPCLALGLHGISADQTSVLFETARKVTLDHVSFHV
QHLPSNHQVFQRLCPLPNSSYWNKIGEIFGDTLFYHSVISLCNAVAQYLLSLPKLPPSLQ
ISTDSEADIASFMVLSLEALCWQLMHDQVPLSLDLQAALDCCCLVLQQPGIWNLLASAAY
VTQACSVINCIRFIIEAMAVEPGEQLLLHEERRKLNTNGAPLEDEESANVSERSKCITKA
CNVMTEMVECLQTILSFGHASNTRIPAFLNTTLRNIGISLARLPLVNSYTRTPPLVWKLG
WSPQAGGEFGTTLPEIPVEFLQEKEVFKEFIYRINVLGWTSRTQFEETWATLLGVLVTQP
LAMNQEEEVPQEEDTERTQINILAVQAITSLVLSAMSIPVAGNPATSCLEHQPRNKTLKA
LDTRFGRKLSVIRGIVEREIQAMISKRDNIASHYPYQAWDPVPSLSHSTSGALISHEKLL
LQINTEREMGNMDYKLGQVSIHSVWLGNNITPLREEEWDEDEEDESDVPAPSSPPTSPIN
SRKHRAGVDIHSCSQFLLELYSQWVLPTNTGKKTPVVLVSEVVRSLLAVSDLFTERTQFE
MMYSTLTELQKIHPAEDEILNQYLVPAICKAAAVLGMDKAIAEPISRLLETTMRSTHMPS
RIGALHGILYILECDLLDETAKQLIPTISVYLLANLRGIAHCVNIHNQQHVLVMCATAFY
LIENYPLDVGHEFTADIIQMCGVMVSGSEESTPSIIYHCVLRGMERLLLSEQLSRLDGEA
LVKLSVDRLNIHSPHRAMAALGLMLTCMYTGKEKSSPGRSSETESTAPDSESVIVAMERV
SVLFDRIRRGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEFISNQQPYPQFMATVVYK
VFQTLHKTGQSSMVRDWVMLSLSNFTQRTPIAMAMWSLSCFFVSASTSAWISALLPHIIS
RMGKAEQVDINLFCLLAMDFYRKQIDEELDRRAFQSVFEMVATPGSPYHQLLTCLRSIHQ
VAQF
NT seq
9375 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccatggagaaactgatgaaggccttcgagtcactaaagtcattccagcaggga
ccgtccaccgaggagccgggacagaaacagaagaaagaatctgccacaaccaaaaaggac
cgtgtaactcactgcctgaccatatgtgaaaacatagttgcacagtctctgaggaattcg
ccagaatttcagaagttgttggggattgcaatggaaatgtttctgctgtgttgcgatgac
gctgagtccgatgtccggatggtagcagatgaatgtttaaataaaatcattaaggcccta
actgactctaatctgcctcggttacaactagaattatacaaggaaattaaaaagaatggc
ccatcaaggagtttacgggctgcactttggagattcgctgagctggctcaccttgttcgt
ccacagaagtgcagaccataccttgtaaacctacttccctgtctggctcgcatcagcaag
cgatcggaagagtctgtgcaggagacactggctgctgctgtgccaaagatcatgatggct
ctgggcaactttgcaaatgacagtgaaatcaagatgttgttgaagacctttattgggaac
cttaaatcaagttcaccgaccattcgtaggactgcagccagctctgctgttagcatctgt
cagcattcaagaaaagcacagtacttctatacttggctgctgaatgtgcttttgggcttt
atggtccctgtggaagaagaccgacacactccacttattttgggggtaatgctcacgctt
cggtatctgatgcctttactgcggcaacaagtgaaggacacaagtctacgaggtagcttt
ggtgtgacccggaaagaggctgaaatctccccttccttggagcagcttatacaggcgtac
gaattgacactacactacactcagcaccgggaccacaatgtggtgacggcagccttggag
atgctgcagcaactgttccgtacccctcctccggagctactcagggccctgacgacttcc
agcagcattaccagagttagcatcgctcgcgatgacagctcaaaccgggttcgcagcgga
agcattgtggaactgatagctggaggaggttctccttgcagtcctgctatcctcaggaag
cagaaaggcaagatggtttctggagaagaggatggacttgaagatgatgcagagacccgg
tcagaagtcagcactgccacttttccaggttcagtaaacagtgaaggtgctgttgatgtc
ccatcaccttctgccttggggtcaacaagcccggtgccggattctactgggcacgatatc
atcactcaacaaccacgttcccagcatactctacaatctgcagagtctgtcgatctcaat
agttcggcgacatcggacctgactggcctgacggtggagggggatgtcgatgaggccctg
agccgaagctccagtcagatcagcaccatccagtcagacaccaatgcagatcagaacgac
aggaccaatcaggctatatctccactcagtgagagctcccagacgactgagggcccggat
tcagccgtgaccccatccgacagttctgagcttgtactcgatgggacagacagtcagtat
tcagcgatgcagatcgggcagcttcaggatgaggaggaggacacctcaaatactcctgga
gatgcacttctagatggcttcacaacttccaccctggcagtaaacaaatctcatttgtta
agtcacatgggccacagccggcagtcctctgacagcagcgttgatcgttttgtcgcgaag
gatgactgtgttgaggctgcagatcttgacaccaagcagccttgccggataaagggagac
attggccattacacggatgagaacgctgcccctttgatccattgtgttcgcctccttagt
gcatcttttcttttaacgggacagaagaatggtcttatccccgacagagaagtgagggtc
agtgtcaaagcactggcagtgagttgtgttggaactgccattgggcttcaccctgaagct
ttcttcaataaactgtacaggaccccacttgaagttttagagagccaagaggaacagtgc
atttctgatattttgaagtatgttgaccatggagatccacagataagaggcgccactgcc
ctcctcgcttcaacattcattcactcagttctgaccaagactcgctttaatccagaaaat
tggctggccgcagtacgaggcgccacaggatacggtgtctctttggacgattgtgttcct
ttactccagaaaactctgaaggataagtcatctgtaacttgcaaactggcttgtgctgct
gtccggcactgcattatgagcctctgcaacagcagctacagtgagttgggtttgcagctc
accatagacctcttgaccttgaagaataactcctactggctggtgaggactgaactgtta
gaaaccctggcagagatggacttcaggttagtcggcttcctggagaggaaaacagtggaa
cttcacaggggccaacatcactacactgggatgttgaagcttcaggagcgagcggtcaac
gatgtcatcattcatttgcttggagatgaggatccaagagtacggcatgtggcggctaca
acccttgtgaggctgattcctcggctgttttttgactgtgaccagggacaatcagatcca
gtggtagctgtagccagggaccaaagcagtgcatatctgcagcttctcatgcatgagact
caatctccttctcactttgcagttagcaccatcaccagaacctacagaggattcaacatt
tcacagaacaccacggacgtgacgatagagaataacctatcccgtgttatcagcgcggta
tctcatgcattaacctcatccacctcccgagccctcatcctgggttgctgtgaggttttg
tcgttgctctctttgaactatcccgtgtgtaactggagcattggttggcactgtgggtat
acaactagcagttcacaagcatccagagtccacctatacaagaatagagggcgttctttc
agtttgtcgcagaacagcccgacagatgattcccgtaaaagctgtactgtggggatggtc
aatatgatactgtccctgctttcctcagcctggtttcctttggacctttcttcccatcag
gatgccttaatattgtctggaaacctgctggccgccattgcacccaaatctctgaagaat
ccctgggccaatgaagatgatgctgctcccaccacgaaacttgaagaaccatggcctgcc
ttggctgacaggaccttggtgggaatggtggaacagctattctctcatctgatgaaggtc
atcaatatctgtgcacatgtgattgatgatgttgcacccggtcctgccctgaaggcaact
ctaccgtcacttgcgaatacaccgtccctcagccccattaggcgcaagggaaaggagaga
gagtcggcagagcagatggctgcaccaatgagtccgaagaaaagttctgaatccagtcca
gctgcacggcccgcagatgctgtaggggctgcaccaaccagcaagtccacctcgcttggt
agtttttaccacctgcctccatatctgaaactacacgatgttctgaaggctacgtacgca
aactacaaggtgactctggacctccagaacaataatgagaagttcggcagctttttgcga
ggaactttggatgttctatctcagctccttgagattgcaacacttccagacattgggaag
tgtgtggaagagatccttggttacctcaagtcctgtttctgcagggaacccatggcagcc
acagtctgtgtgcagcagctattgaagacactttttggaacaaacctagcatcgcagtac
gaaggctcatcctccaaccccagcaaatcacaagggaaggtgcagcgcctgggttcctcc
aatctaaggccaggactgtatcactactgcttcatggcaccatatactcacttcacccaa
gcactagctgatgccagtctaaggaatatggtccaagcagaacctgagcaggacacatcc
gggtggttcgatgtgctgcaaaaggtttcatcacagctgaaggtcagtctgaccaatgtg
gccaggcatcgagctgataagaatgcaatacacaactacatccggctctttgagcctctg
gtcatcaaggccttgaagcagtacaccaccaccacttcagtccatctgcagagacaagtg
cttgacttgttggctcagcttgtacagctcagggtgaactactgcctcctcgattcagat
caggtattcattggttttgttctgaagcagtttgaatacatcgaggtgggccagtttagg
gaatccgaggccatcattccaaacatatttttcttcctggtgttgctgtcatacgagcgc
taccactccaagccgatcattggaattcccaaaattatccagctgtgcgatgggatcatg
gccagtggtcggaaagctgtcacgcatgcaatcccggcactacagcccatagttcacgat
ctgtttgttctgcgagggaccaataaagctgatgctggcaaagagttggacacgcagaag
gaagtggtggtttccatgttgctgagactcatccaataccatcagagctgcagtaaacat
cttgaaatggtcttggagatgttgatcctggtgctgcaacagtgtcacaaggagaatgag
gataaatggaaacgcctttcccgacagatagctgatatgattctaccgttgctggctaaa
cagcagatgcaccttgattcgcatgaggccttaggagtgctgaatacactgtttgagacg
gtggcaccctcatcactgcggcctgtcgacatgttgctgaagagtatgtttgctatgcct
ggcaccctggcctccgttggaacagttcagctttggatatcgggcatcctagctatcctg
cgggtgcttatttctcagtccaccgaggatattgtcctgtcccgggttcaggagttgacc
ctgtccccatatttgatttcctgccagaatattagcgtgttgagagaccgagggaatcag
atcgtcccaccggaggagcaggatgaagagattcagagcaaacatctaccagaagaaact
tttgccaggttcctcctacagatggtggggatcctcttggaggacattgtgaacaaacag
ctgaaagtggacatgagtgagcagcagcactccttttactgtcagcaggttggcactctg
cttatgtgcctcatacatatcttcaagtcagggatgttcagaaggatcactgcagctgcc
accagattgattgtgggcaacggttctgatgggagcttttacacattggaaagcttgaat
gtcttggttcagtccattattcccactcacccgtccctggtgctgctttggtgtcaaatc
ctgctgctcgtgaactacacaaattacagttggtggtcagaggtgcatcagactccgaag
agacacagcttgtccagcacaaagttattgagtccacagatatcggaaaatgaagattca
aagtctgcgtcaaagttgggtgtgtgcaatagagaaatagttcgaagaggagctctgatt
cttttctgtgattatgtgtgtcaaaatttgcacgattctgagcacctgacttggctattg
gtcaaccatgttcaagatctcatcaatctttcccacgagcctccggtacaagattttatc
agtgccattcatcgtaactctgcagccagtgggcttttcattcaagctatccagtcccga
tgtgataatcttgcaacacctaccatgttaaagaagaccctacagtgtttggagggaatc
catctcagccagtcgggggcagtcttgatgctgtatattgacaagctcatcagtacacct
ttccgagtgctggcacggatggtggatacactggcttgccgccgagttgagatgcttttg
gcggaaagcttgcagaatagcgttgcccaagtgccacgtgaagagttggaaaggattcag
cgttatctacagaccacttgccttgctcagagacaccaaagattgtactccctgctggac
aggttccgtacgacagttgcggctgagacagttagcccgtccccaattgtgacctctcac
ccgctggatggagacagactagcctccatggaatctatcattgtggagaaagactggtat
gtgtcacttattaaatggcagtgctgcagcaagttaaatacggctttaatggagtgcact
gaactacttgataaacttcctgaagatgacctctgctctgtcatgacatctaaggagttc
aacttgaaccttttgacgccctgcttggctttgggtttgcacggaatctctgcagatcag
accagcgttctgttcgaaactgccaggaaagttaccttggaccacgtgtcattccatgtc
cagcaccttcccagcaaccatcaggtgttccaaaggctgtgccctttgcccaattcctct
tactggaataagatcggtgagatttttggcgatacgctgttctatcactccgttattagc
ctgtgtaatgcagtggcccaatatctcctgtctcttcccaagctgccaccatctcttcag
atttccactgacagtgaggcggatattgccagcttcatggtcttgtctttagaggcgctg
tgctggcagttgatgcacgatcaagttcctctaagtctggacctgcaagctgctctggat
tgttgctgcttagttctgcaacagcctggcatttggaacttgctggcctctgcagcctat
gtaactcaagcctgctcggttatcaactgcatccggttcatcattgaagcaatggcggtt
gaaccaggagagcagctgctgcttcatgaagagaggagaaagttgaatactaatggagct
ccactcgaggatgaagagagtgcgaatgtgtctgagcgatccaagtgcattacaaaggcc
tgtaatgtgatgactgaaatggtggagtgtctccagactatactgtcctttgggcatgcc
agcaacacacgaatcccagcattcctgaacacgactctcaggaatattggtatcagtttg
gcccgattgcctctggttaacagctacacccgtaccccgccattggtatggaagttggga
tggtcaccacaagctgggggtgaatttggtacaactctgcctgaaattccggtcgagttt
cttcaggaaaaagaagtcttcaaagagttcatctataggataaacgttcttggctggaca
agccgcacccagtttgaggaaacctgggcaacccttctcggtgtacttgtgactcaacca
ctagcgatgaaccaggaagaggaagttccacaagaggaggatacggagaggactcagatt
aatattcttgcagttcaagcgataacatccctggtgctaagtgcaatgtccattccagtg
gcagggaacccagccaccagctgtcttgaacatcagcctcgtaataagactctgaaggct
ctggacacacggttcggaagaaaacttagtgtcattcgagggatagtggagcgagaaatc
caagcaatgatatcaaaaagggacaacatagcatcacattacccatatcaggcgtgggat
cccgttccatccctctcccattcaacatctggtgccctgatcagccatgaaaagctttta
ctgcagattaacacagagcgggaaatggggaacatggattataaactgggacaggtctcc
attcattctgtttggctgggtaacaacataacccccttgagagaagaggagtgggatgaa
gatgaggaagatgaaagtgatgtgcctgctccatcctcccctccaacctctccaattaat
tccaggaagcatcgagctggagttgacattcattcatgttctcaattcctgttggaactc
tacagtcagtgggtccttcccacaaacactgggaagaaaacccccgttgtcctggtcagt
gaggtggtaagatcgcttttggcagtctcggatttatttactgagaggacccagtttgag
atgatgtacagcactctgacggaacttcagaaaattcatccagcagaagatgagattttg
aatcagtatctggtccctgccatctgcaaagcagctgctgttctgggcatggataaggcc
atagctgagccaataagccgcctgttggagaccacaatgcggagtacccacatgccatcc
cgaataggagcgctgcatggaatcctgtacatcctggagtgtgatctgttggatgagaca
gcaaagcagctcattccaaccattagtgtttacctgttggccaatctgcgtggaattgca
cactgtgtcaacatccacaaccagcaacatgtattggtgatgtgtgcgacggcattttat
ctgatcgagaactatccgctcgatgtcggccatgaatttactgcagacatcattcagatg
tgtggagtaatggtctctggcagcgaggagtccacaccttccattatctaccactgtgtg
ttgcgtggaatggagcgacttcttctttcggagcagctttcgcgtctggatggcgaggcc
ctggtgaaattgagcgtggacagattgaatatacacagtcctcaccgagccatggctgcc
ctgggactaatgctgacctgcatgtacacaggcaaagaaaagagcagccctggtcggagt
tccgaaacggagagcactgctccagacagcgagtctgttattgtggcaatggagagggtg
tccgttctcttcgacagaatcaggagaggctttccctgtgaggctcgggttgtagcacgg
atccttccacagttccttgatgacttcttcccacctcaagacgtgatgaacaaggttatt
ggagaatttatttccaatcagcagccttacccacaattcatggccacagtcgtttacaag
gtctttcagactttacataaaactggccagtcttccatggtgagggactgggtaatgctg
tcgctttcaaacttcacacaaagaacaccaatagcaatggcgatgtggagcctttcttgt
ttcttcgtcagtgcttcaaccagcgcatggatctcagccctcctcccccacattatcagc
cgtatgggtaaggctgagcaagtggatataaacctcttctgcttgttggccatggacttc
tacaggaaacagatcgatgaggagctggatcggcgtgctttccagtcagttttcgaaatg
gtggcgactcctggcagcccctatcaccagctgttgacctgcttgagaagcattcaccag
gttgcgcaattctga
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integrated database retrieval system
