Scyliorhinus torazame (cloudy catshark): 140429626
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Entry
140429626 CDS
T11303
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
stoz Scyliorhinus torazame (cloudy catshark)
Pathway
stoz03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
stoz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
140429626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stoz03021
]
140429626
03036 Chromosome and associated proteins [BR:
stoz03036
]
140429626
Transcription machinery [BR:
stoz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
140429626
Chromosome and associated proteins [BR:
stoz03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
140429626
Chromatin remodeling factors
BAF complex
140429626
PBAF complex
140429626
GBAF(ncBAF) complex
140429626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
140429626
NCBI-ProteinID:
XP_072372981
LinkDB
All DBs
Position
9:184819431..185029579
Genome browser
AA seq
1580 aa
AA seq
DB search
MSTPTDPSGGMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPSNVTHSIPP
QGPSEYQQDSMHQMHKPIDAMHDKGMADEMHYGQMKGMGMRTSHAGMGPPQSPMDQHSQG
YLSPHPSPMSVPEHVPSPMSAGGPTPPQIPPAQATPMLQGDPQVISQQNRGPSPFNPVQL
HQLRAQILAYKMLARGQPLPDNLQLAVQGKRSLPSMQQQVAPIAYNRPPNMGMHSMAGQA
VGPSQIMPGHVPNVPKPWTEGQVNEMGIPNTPQKMPTQATCGRPSPIPAVQATPGPGAPL
SQQPIVQPSPTIQLHQKQNRITPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGS
LPPDLRNKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNAKAYKRSKRQSLREAR
ITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLSRAIGTWHANT
EREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVASLTKLVYEH
KAAQAAKEKKKKKKKKKKTEEVSEAASSSLAPDGELLDESSQMSDLPVKVIHVETGKVLQ
GADAPKAIQLDTWLEMNPGYEVAPRSDTEESGSEYEEEEEDEEAPVAPGSEEKKIIVPNI
EDVSDFFAKQIIECAKQDVDDEYSMRAGMKGSQSYYAVAHAVTERVEKQSTLLINGSLKH
YQLQGLEWLVSLYNNNLNGILADEMGLGKTIQTIGLITYLMEHKRLNGPYLIIVPLSTLS
NWVYEFDKWAPSVVKISYKGTPALRRSFIPQMRSGKFNVLLTTYEYIIKDKHVLAKLRWK
YMIVDEGHRMKNHHCKLTQVLNTHYVAPRRVLLTGTPLQNKLPELWALLNFLLPTIFKSC
STFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVI
KCDMSSLQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPFMFQHIE
ESFAEHLGYNGGIITGPDLYRASGKFELLDRILPKLRVTNHRVLLFCQMTSLMTIMEDYF
AFRSFSYLRLDGTTKAEDRGALLKMFNEEGAKYFIFLLSTRAGGLGLNLQAADTVVIFDS
DWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQ
KSSSHERRAFLQALLEHEEQNEACGDTNASPSCSTTWEEDEVPDDETLNQMIARHEEEFE
LFMRMDLERRREDARNPKRKPRLMEEDDLPSWIVKDDAEVERLTCEEEEEKMFGRGSRMR
RDVDYSDALTEKQWLRAIEDGNLEEMEEEIRQKKARKRRRNVDKDPSKDDGKKKKKRGRP
PAEKLSPNPPRITKQMNAIIDTVINYRDSLSRQLSEVFIQLPSRKELPEYYELIRKPVDF
KKIKDRIRSHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKE
EESEEESNEDDDDEEESGSESKSVKVKIKLGRKDSDKSREKGKSKKRLSRTKIKPVISDD
DSDDDQDDNDQSDISGSEDE
NT seq
4743 nt
NT seq
+upstream
nt +downstream
nt
atgtcgactcctacggatccctctggtgggatgcctcaccctggaccttctccaggacca
ggtccatctcctggaccaattctcggcccaagcccaggaccaggaccgtcaccagggtca
gttcatagcatgatgggtcccagtccaggaccatcaaacgtaacccattcgataccaccc
cagggcccgagtgagtaccagcaggatagcatgcatcagatgcacaagcctatagatgca
atgcatgacaagggaatggctgacgaaatgcattatggtcagatgaaaggaatgggaatg
aggacttctcatgctggaatgggaccacctcagagtcctatggatcagcattctcaagga
tatctatctcctcatccgtctcctatgagtgtaccagagcatgttcccagtccaatgtca
gcaggtgggcctacaccccctcagattccaccagcccaggctacaccaatgttgcaaggc
gatcctcaggtcattagccagcagaaccgaggtccttcacctttcaacccagttcagctt
catcaattaagggctcaaattctggcttataagatgcttgctagaggacaaccattacca
gacaacctgcagcttgctgttcagggaaaacggtcactaccgagtatgcaacagcaagtg
gcccccattgcatacaaccgaccacccaacatgggtatgcattcaatggctggtcaagct
gtaggaccctcgcaaataatgccaggacatgttcctaatgttcccaaaccctggactgaa
ggtcaagttaatgaaatgggcattcctaatacacctcagaaaatgcctactcaagctact
tgtggaagaccttctcctataccagctgtacaagcaactcctggccctggggcaccactg
tctcaacaacctattgtccagccttcacctaccatccaactccatcaaaagcaaaaccgt
ataacacccatccagaaaccacaggggttggatcctgtcgaaattcttcaagaacgtgag
tacagacttcaagctcgaattgctcatcgtattcaagagcttgaaaatttgcctggttct
ttgccgccagatttgcgcaataaagctactgttgaattaaaagctcttcgactactgaac
ttccaacggcagctgaggcaagaagtggttgcctgtatgcgccgtgacacgactttggag
acagcactcaatgcgaaggcctacaaacgtagtaaacggcagtctttaagagaggctcgt
atcacagaaaagctggagaagcaacagaagattgaacaagagcgtaagcgcaggcagaaa
catcaggagtatctcaacagtatactgcagcatgcaaaagacttcaaggaatatcaccga
tcagttactggaaaaattcagaaactttcccgagcaattggtacttggcatgccaacaca
gaacgagaacagaagaaagaaactgagaggatcgagaaagaaagaatgaggaggctgatg
gctgaagatgaagaaggctatcgtaaactaattgaccagaaaaaggataagcgtctggca
tacctgcttcagcaaacagatgagtatgttgcgagtcttacgaaactggtctacgagcat
aaagctgctcaggctgctaaagaaaagaagaaaaagaagaagaaaaagaagaaaacggag
gaagtttctgaagcagcaagttctagccttgctcctgatggagagcttttggatgaaagc
agccaaatgagcgatttgccagtcaaagttattcatgttgaaactgggaaagtccttcag
ggagctgatgctccaaaagctatccaacttgatacgtggttggaaatgaaccctgggtat
gaagtggctccgcgatcagatactgaggagagtggatcagagtatgaggaggaagaggaa
gatgaagaagccccagttgcaccagggagtgaagaaaagaagattattgttcctaacatt
gaagacgtatcagacttttttgcaaagcagataattgagtgtgctaaacaagatgttgat
gatgaatacagcatgcgagcaggaatgaaaggttctcagtcatattatgcagtggcacat
gcagtgacggaaagggtagagaaacaatcaactttgctgatcaatggatcacttaaacac
taccaacttcaaggactagagtggctggtttctctttacaataataatctaaatggaatt
ctggctgacgagatgggacttggaaagacgatccagactattgggctcattacttacctg
atggaacataagagactcaacggaccctatctcattattgtacccctctcaactttatcc
aactgggtatatgagtttgataagtgggccccatctgttgtgaagatttcttacaagggt
acaccagctctccgacggtcgtttattccacagatgcgcagcggaaaattcaatgttctt
ctaaccacatacgaatatattattaaagacaaacatgtgcttgctaagcttcgatggaaa
tacatgattgtagatgaaggccatcgtatgaagaatcatcattgtaaactgacccaggtg
ttgaatactcactatgttgcacctcgtcgggtccttttgactggaactccactacagaac
aaacttcctgaactttgggcccttctcaactttcttttgccgactattttcaaaagctgc
agcacctttgaacagtggtttaatgctccatttgccatgactggagaaagggtggaccta
aatgaagaggaaacgatcctgatcattcgtcgtcttcacaaagtgctgcgtcctttcctt
ctgagaaggctgaaaaaggaagtggaatcccagttaccagaaaaggttgagtacgtcatc
aaatgtgacatgtcttctctacagaagattctataccgtcacatgcaagctaaaggaatt
cttctaacagatggttctgagaaagacaagaagggcaaaggtggtgctaaaaccctcatg
aataccataatgcagctcagaaaaatatgcaatcatcccttcatgtttcagcacatagag
gaatcttttgctgaacacttgggttataatggagggatcattactggtccagacctatat
cgagcttcgggaaaatttgaattactggaccgcattttgccaaaactgcgagttactaat
cacagagtactgctgttctgccagatgacctccctgatgaccattatggaagattatttt
gcgttcagaagtttttcatacttacgacttgatggaacaactaaggcagaggatcgcggt
gctttgctgaaaatgttcaatgaagaaggcgccaagtacttcatatttttgctcagtacc
cgggctggtggtttgggtttgaaccttcaagctgctgatactgttgtcatctttgacagt
gactggaatccgcatcaggatttacaagcccaagatagggctcatcgcattggacagcag
aatgaagtccgtgttttgcgcctctgcacagtcaacagtgtggaggagaaaattcttgcc
gctgccaaatacaagcttaatgtggaccagaaggttatccaggctggtatgtttgatcaa
aaatcttcaagtcatgagcgtcgagctttcctgcaagctttgttggaacatgaggagcag
aacgaggcatgtggggacaccaatgcttctccttcctgcagtactacctgggaagaagat
gaagttccagatgatgagaccctgaatcagatgattgctcggcatgaagaggagtttgaa
ttgtttatgcgcatggatctggagcggcgaagagaagacgcacggaatccaaaacgtaag
ccacggctgatggaggaagatgaccttccatcatggattgtcaaagacgatgcagaagtt
gaacggttgacttgtgaagaggaggaagagaaaatgtttggacgagggtcacgtatgcgc
agggatgtggattacagtgatgctcttacagaaaagcagtggctaagggcaattgaagac
ggcaatttagaagaaatggaagaggaaatacgtcagaagaaagctagaaagcgcagaaga
aatgtagataaagatccatcaaaagacgatggaaagaagaagaaaaagagaggcagacct
ccagctgaaaaactgtctccgaatccacccaggatcacaaaacagatgaatgcaatcatt
gatactgttattaactacagagacagcttgagccgacagctgagtgaggtttttatccaa
ttgccttcacggaaggagctccctgaatactatgagctaatccgaaaacctgtggatttc
aaaaaaattaaggaccgcattcgcagccataagtatcggagtctaggggatctagaaaag
gatgtaatgttgttatgtcacaatgctcagacattcaatctggaaggatcacagatttat
gaagattccatcgttcttcaatctgtattcaaaagtgcaaggcagaagattgctaaagaa
gaagaaagtgaggaggaaagtaatgaagatgatgatgatgaagaggagtcaggatctgag
tcaaaatcagtcaaagttaaaatcaagcttggtcgaaaggacagtgacaaaagtcgtgag
aaaggaaagagtaagaaacggctcagtcgtactaaaatcaagcccgtcattagtgatgat
gacagtgatgatgaccaagatgacaatgaccagtctgatatcagtggaagtgaagatgaa
tga
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integrated database retrieval system
