KEGG   Scyliorhinus torazame (cloudy catshark): 140429860
Entry
140429860         CDS       T11303                                 
Symbol
smu1a
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
stoz  Scyliorhinus torazame (cloudy catshark)
Brite
KEGG Orthology (KO) [BR:stoz00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:stoz03041]
    140429860 (smu1a)
Spliceosome [BR:stoz03041]
 Complex B
  Other components
   Complex B specific factors
    140429860 (smu1a)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd ANAPC4_WD40 WD40_Gbeta Beta-prop_EML Beta-prop_WDR90_POC16_2nd LisH_TPL Beta-prop_RIG_2nd Beta-prop_VPS8 Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_ACSF4 WDR90_beta-prop_4th Beta-prop_Vps41 Beta-prop_Aladin Beta-prop_Nup120_160 WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_WDR41 Ge1_WD40 Beta-prop_NUP159_NUP214 Beta-prop_NWD2_C Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st Beta-prop_WDR75_2nd WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_IP5PC_F Beta-prop_RSE1_2nd Beta-prop_BBS7 eIF2A DUF7165 Beta-prop_NOL10_N TFIIIC_delta VPS8_N LisH LisH_PAC1 PROPPIN LisH_WDR26 Beta-prop_ELP1_2nd
Other DBs
NCBI-GeneID: 140429860
NCBI-ProteinID: XP_072373451
LinkDB
Position
9:262729303..262769453
AA seq 513 aa
MSIEIESADVVRLIMQYLKENNLHRTLATLQEETTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGLLPP
GMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLR
RFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHTSFVNEVTFTQD
GHYILSASSDGSVKIWNVKTTECANTFKSLGSSAGTDITVNSVHLLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCCLSPRGEWIYCVGEDFVLYCFSTVTGKLERTL
TVHEKDVIGIAHHPHQNLIGTYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtcgatcgaaatcgaatcggcggatgttgtccgtctgatcatgcagtacttgaaggag
aacaatttgcaccggaccctggcaactttacaggaagagaccacagtgtctctaaacact
gtggacagtattgagagttttgtagcagatataaacagcggccactgggacactgtatta
caggccatacagtcactgaagctgcctgataaaactcttattgatttgtacgaacaggtg
gttttagagctgattgaacttcgggagttgggtgctgctagatctttgctacgacagact
gacccaatgattatgttaaaacagacccaaccagagagatatattcatctagagaacctg
ctagcgaggtcatactttgatccacgtgaggcgtacccagatggcagcagtaaagagaag
cgaagagcagccattgctcaggcactggcaggagaagtcagtgtggtgcccccttcgcgt
ctcatggctttgttgggtcaggcattaaagtggcagcaacaccaggggctgcttcctcca
ggtatgacaattgatttgttcagaggtaaagcggccgtgaaagatgtagaagaagagaaa
ttcccaactcaactcagcaggcacatcaagtttggtcagaagtcccatgtggaatgtgct
cggttttctccagatggtcagtatcttgttactggttcagtggatggctttatagaagtg
tggaacttcaccactggcaaaattagaaaggatttgaagtaccaagcacaagataacttc
atgatgatggatgatgccgttctttgcatgtgtttcagtcgtgatactgaaatgttggct
acaggtgcacaggacggaaagattaaggtatggaagattcagagtggtcagtgtctccgc
cgatttgaacgtgctcacagtaagggagtaacctgcctgagtttctccaaagacagtagt
cagatcctcagtgcatctttcgatcaaacgatccggattcatggtctgaagtctggaaaa
acgctgaaggaattcagaggtcatacatcatttgttaatgaagtgacatttacacaagat
gggcattacattttgagtgcatcctcagacggcagtgtaaagatctggaacgtgaagaca
acagagtgtgcaaataccttcaagtcattgggcagctctgctggtaccgatatcacagtg
aacagcgtgcacctgctgccaaagaatcctgaacattttgtcgtgtgtaaccggtcgaat
acagtagtcatcatgaacatgcaggggcagattgtgaggagctttagctctggtaaaaga
gagggaggtgactttgtgtgctgctgtctgtctccacgtggtgaatggatttactgtgtt
ggtgaagattttgtgctatactgtttcagtacagtgactggcaaactggaaagaacattg
acggttcatgaaaaagatgttattggaattgctcatcatccacatcagaacctgattgga
acctacagtgaagatggtctccttaaactctggaaaccttga

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